Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,066,152 Δ12,778 bp insH6[yoeF] insH6, yoeA, insD3, insC3, yoeA, isrC, flu, yeeR, yeeS, yeeT, cbeA, cbtA, yeeW, [yoeF]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2066152 2078929 12778 60 [0] [0] 60 insH6–[yoeF] insH6,yoeA,insD3,insC3,yoeA,isrC,flu,yeeR,yeeS,yeeT,cbeA,cbtA,yeeW,[yoeF]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 20661510 (0.000)59 (0.390) 56/486 0.8 100% intergenic (‑387/+154) cobU/insH6 cobinamide‑P guanylyltransferase/cobinamide kinase/IS5 family transposase and trans‑activator
?NC_000913 2078930 = 0 (0.000)coding (356/357 nt) yoeF putative uncharacterized protein YoeF

CGAAATAAGATGGCATTACGGAATAGCCAGACTTTCTCGTGTTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATGCACTAGGGAAGGTGCGAATAAGTGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTC  >  NC_000913/2065901‑2066395
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    
cGAAATAAGATGGCATTACGGAATAGCCAGACTTTCTCGTGTTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTAt                                                                                                                                                                                                                                                      <  2:984604/251‑1 (MQ=255)
            gCATTACGGAATAGCCAGACTTTCTCGTGTTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattgg                                                                                                                                                                                                                                          >  1:862387‑M1/1‑239 (MQ=255)
                        aGCCAGAATTTCGCGTGATAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGCTTGACACATATCATTCAGATAATGAATTACTGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAGATCCAGGCTATTGATTCACCGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTCGCGCCTATaatttcgattggttctcggatg                                                                                                                                                                                                                                >  2:889439‑M1/1‑227 (MQ=255)
                           cAGACTTTCTCGTGTTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggat                                                                                                                                                                                                                           >  2:704416‑M1/1‑224 (MQ=255)
                           cAGACTTTCTCGTGTTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggat                                                                                                                                                                                                                           <  2:681560‑M1/251‑28 (MQ=255)
                            aGACTTTCTCGTGTTAACGTCCGACAAAATGCGTCATTGCCAGCGGTTTCTGTGGCTTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATactttcgattggttctcggctgaggatg                                                                                                                                                                                                                          >  2:1116552‑M1/1‑223 (MQ=255)
                                  tctcGTGTTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgac                                                                                                                                                                                                                     <  1:1041025‑M1/250‑34 (MQ=255)
                                     cGTGTTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggt                                                                                                                                                                                                                  <  1:1007981‑M1/250‑37 (MQ=255)
                                       tgtTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtg                                                                                                                                                                                                                 <  2:1035387‑M1/249‑38 (MQ=255)
                                          tAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatac                                                                                                                                                                                                             >  2:144418‑M1/1‑209 (MQ=255)
                                                  gACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataag                                                                                                                                                                                                    <  2:389059‑M1/251‑51 (MQ=255)
                                                          gCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaat                                                                                                                                                                                             <  1:1181070‑M1/250‑58 (MQ=255)
                                                              cATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagca                                                                                                                                                                                        <  1:810022‑M1/251‑63 (MQ=255)
                                                              cATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagc                                                                                                                                                                                         <  1:342537‑M1/250‑62 (MQ=255)
                                                                   aCAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgag                                                                                                                                                                                   <  1:658594‑M1/251‑68 (MQ=255)
                                                                   aCAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatg                                                                                                                                                                                     >  1:542197‑M1/1‑184 (MQ=255)
                                                                           ttCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgcc                                                                                                                                                                            <  1:445129‑M1/250‑75 (MQ=255)
                                                                               gtgGATTGACACCTTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCCTTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgcggatgatgacggtgatacacagataagaatcaatgag                                                                                                                                                                                          >  2:654173‑M1/1‑172 (MQ=255)
                                                                               gtgGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggca                                                                                                                                                                       <  2:645250‑M1/251‑80 (MQ=255)
                                                                               gtgGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggc                                                                                                                                                                        <  2:332997‑M1/250‑79 (MQ=255)
                                                                               gtgGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgag                                                                                                                                                                                          <  1:654173‑M1/232‑61 (MQ=255)
                                                                               gtgGATTGAAACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgaaacacagataagaatcaatgagcaatgagggttgccgggc                                                                                                                                                                        >  2:923832‑M1/1‑172 (MQ=255)
                                                                                                  tcaGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaac                                                                                                                                                     <  1:138146‑M1/250‑98 (MQ=255)
                                                                                                        aaTGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaatt                                                                                                                                              <  1:1182882‑M1/251‑105 (MQ=255)
                                                                                                           gAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCCACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattact                                                                                                                                           >  2:928884‑M1/1‑144 (MQ=255)
                                                                                                           gAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattact                                                                                                                                           <  2:355506‑M1/251‑108 (MQ=255)
                                                                                                                    cTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgc                                                                                                                                  >  2:104374‑M1/1‑135 (MQ=255)
                                                                                                                     tACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgcc                                                                                                                                 >  1:721711‑M1/1‑134 (MQ=255)
                                                                                                                               acaacCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatt                                                                                                                       <  1:889439‑M1/251‑128 (MQ=255)
                                                                                                                                        aaaCGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccata                                                                                                              <  2:759032‑M1/251‑137 (MQ=255)
                                                                                                                                         aaCGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccat                                                                                                               >  1:750703‑M1/1‑114 (MQ=255)
                                                                                                                                         aaCGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccat                                                                                                               >  2:236732‑M1/1‑114 (MQ=255)
                                                                                                                                                aTTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcag                                                                                                      <  1:184408‑M1/251‑145 (MQ=255)
                                                                                                                                                      ttCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagcttttt                                                                                                >  1:454683‑M1/1‑101 (MQ=255)
                                                                                                                                                          gAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaa                                                                                                                                                                                              <  1:15862‑M1/153‑57 (MQ=255)
                                                                                                                                                          gAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaa                                                                                                                                                                                              >  2:15862‑M1/1‑97 (MQ=255)
                                                                                                                                                               ccAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatat                                                                                        <  2:542197‑M1/250‑159 (MQ=255)
                                                                                                                                                                  ggCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcg                                                                                    <  1:829497‑M1/251‑163 (MQ=255)
                                                                                                                                                                      aTTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgaaacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgt                                                                                <  1:923832‑M1/251‑167 (MQ=255)
                                                                                                                                                                                cGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagct                                                                                                           <  2:180291‑M1/214‑140 (MQ=255)
                                                                                                                                                                                cGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagct                                                                                                           >  1:180291‑M1/1‑75 (MQ=255)
                                                                                                                                                                                 gTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggag                                                                       >  1:1000830‑M1/1‑74 (MQ=255)
                                                                                                                                                                                  tCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattac                                                                                                                                            <  2:877271‑M1/179‑107 (MQ=255)
                                                                                                                                                                                  tCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattac                                                                                                                                            >  1:877271‑M1/1‑73 (MQ=255)
                                                                                                                                                                                    aGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctc                                                                  <  2:950203‑M1/251‑181 (MQ=255)
                                                                                                                                                                                                          aGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcg                                            >  1:1125358‑M1/1‑49 (MQ=255)
                                                                                                                                                                                                                tGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacg                                      >  1:565363‑M1/1‑43 (MQ=255)
                                                                                                                                                                                                                     aacaacGTAATAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacgcgatc                                 >  1:288915‑M1/1‑38 (MQ=255)
                                                                                                                                                                                                                             aaTAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacgcgatcttcatag                          <  1:704416‑M1/250‑221 (MQ=255)
                                                                                                                                                                                                                             aaTAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggaga                                                                      <  2:197622‑M1/206‑177 (MQ=255)
                                                                                                                                                                                                                             aaTAGAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggaga                                                                      >  1:197622‑M1/1‑30 (MQ=255)
                                                                                                                                                                                                                                 gAATTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacgcgatcttcatagtcacc                     >  2:430219‑M1/1‑26 (MQ=255)
                                                                                                                                                                                                                                   aTTATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaaagcgatcttcatagtcacctt                   >  2:631838‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                                                     tATCCGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacgcgatcttcatagtcacctttc                 >  1:613850‑M1/1‑22 (MQ=255)
                                                                                                                                                                                                                                         cGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagcttt                                                                                                  <  1:120074‑M1/166‑149 (MQ=255)
                                                                                                                                                                                                                                         cGGAATGGTGGCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagcttt                                                                                                  >  2:120074‑M1/1‑18 (MQ=255)
                                                                                                                                                                                                                                               ggtggCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacgcgatcttcatagtcacctttcatgctggcg        <  1:301987‑M1/250‑239 (MQ=255)
                                                                                                                                                                                                                                                  ggCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacgcgatcttcatagtcacctttcatgctggcgatg     >  2:261904‑M1/1‑9 (MQ=255)
                                                                                                                                                                                                                                                   gCGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacgcgatcttcatagtcacctttcatgctggcgatgat   <  1:236732‑M1/251‑244 (MQ=255)
                                                                                                                                                                                                                                                    cGACTATaatttcgattggttctcggatgaggatgatgacggtgatacacagataagaatcaatgagcaatgagggttgccgggcaaccctcattgaataaaacgggaattacttcgcttcgccgtttttcatttcgcccatagctttcagctttttggagatatcgcggcgttctttggagagctcggcatttttgatgatgtaatcgtcaacgcgatcttcatagtcacctttcatgctggcgatgatg  <  2:1125358‑M1/251‑245 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    
CGAAATAAGATGGCATTACGGAATAGCCAGACTTTCTCGTGTTAACGTCCGACAAAATGCGTCATTGACAGCGGTTTCTGTGGATTGACACATTTCATTCAGATAATGAATTAATGCTACTGCCGGAACAACCAGCAAACGGGCATTGTGTTCTGAAATCCAGGCTATTGATTCAACGTCAGCGACAGATCTGCGCTGTAAAAGAACTTGTAAAACAACGTAATAGAATTATCCGGAATGGTGGCGACTATGCACTAGGGAAGGTGCGAATAAGTGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTC  >  NC_000913/2065901‑2066395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: