| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,591 | Δ24,234 bp | [yghD]–yghT | 20 genes [yghD], yghE, yqhJ, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH9, yghQ, yghR, yghS, yghT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110591 | 3134824 | 24234 | 29 [0] | [0] 29 | [yghD]–yghT | [yghD],yghE,yqhJ,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH9,yghQ,yghR,yghS,yghT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110590 | 0 (0.000) | 29 (0.470) | 29/492 | 0.6 | 100% | coding (537/537 nt) | yghD | putative type II secretion system M‑type protein YghD |
| ? | NC_000913 | 3134825 = | 0 (0.000) | intergenic (+2/+47) | yghT/pitB | putative ATP‑binding protein YghT/metal phosphate:H(+) symporter PitB | |||||
GCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACAGGTTCTATCCAGACCTGAATATTCTCCCCACGATCGGCTATCCGCCTGATGACCACCGAGTGCGCGGAAGCACTGTCACTGATGACCCGCGATACCTGCGCAGGCGTTGT > NC_000913/3110358‑3110838 | gcCCCGTTGCCCGGATAGCTCCGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTTTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccg > 2:49306‑M1/1‑233 (MQ=255) aTAGCTCAGTCGGTATAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgg < 2:351288‑M1/251‑33 (MQ=255) aTAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgg > 1:232132‑M1/1‑219 (MQ=255) gCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggc > 2:474266‑M1/1‑216 (MQ=255) gTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCCCGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaaggcccgatcgccaggaccgggcattttcagg > 2:219534‑M1/1‑207 (MQ=255) gCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCAGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggtt < 1:495136‑M1/251‑50 (MQ=255) gAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactg < 1:234230‑M1/251‑60 (MQ=255) acccgTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCGCGAAAAAAATTAGCTTATAAAGTCTGGGGGAATGACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaaggcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatg < 2:344605‑M1/249‑65 (MQ=255) aTTCTTAAGAACCCGCCCACAAGGCGGGTTTTTTCTTTTGGATCTTACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTACTGATACTTcaaaaatggaaatgccctatcgccaggaccgggcattttcaggaatgttaaatcatctgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggt < 2:417493‑M1/251‑106 (MQ=255) cTGACAATAACCTTCACG‑AAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaactacccacgccatcaggaggctggttaccgttttacg > 2:23571‑M1/1‑102 (MQ=255) gACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATGGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaaacaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgtttt < 2:396604‑M1/247‑147 (MQ=255) cAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctg > 1:490658‑M1/1‑99 (MQ=255) aTAACCTTCACGAAAAAAATTAGCTTATAAAGACTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgt > 2:219425‑M1/1‑97 (MQ=255) ttCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccac > 1:423263‑M1/1‑91 (MQ=255) aGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaaccaaccgccgtccaccacc > 1:326037‑M1/1‑76 (MQ=255) gCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccat < 1:329054‑M1/251‑177 (MQ=255) aCTCTCGCCACGTTAACGAGAGCAATTTTATTGATATTAAACTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggacggttaaatcaactgcaatgctatccagtacagcccaccagaaagcaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatagtccctgcaactgcagacg > 2:113140‑M1/1‑53 (MQ=255) ctctCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgcg > 1:436956‑M1/1‑52 (MQ=255) gTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggccgtgtgt > 2:481726‑M1/1‑42 (MQ=255) aTTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggc > 1:84537‑M1/1‑29 (MQ=255) tATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcc > 1:482060‑M1/1‑25 (MQ=255) aTTGATATTAATCTCCGGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagatgacgtgtgttgtggagacgggcatcc < 1:252653‑M1/250‑227 (MQ=255) ttGATATTAATCTACTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatccc > 2:153204‑M1/1‑23 (MQ=255) gATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaat > 1:21314‑M1/1‑21 (MQ=255) atatTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaata < 1:474266‑M1/251‑232 (MQ=255) aaTCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataact < 1:189902‑M1/251‑237 (MQ=255) aTACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataactggcaagacc > 1:350842‑M1/1‑6 (MQ=255) aCTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataactggcaagaccg > 1:61628‑M1/1‑4 (MQ=255) cTTcaaaaatggaaattcccgatcgccaggaccgggcattttcaggaaggataaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccaccaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagccgagaggacgtgtgttgtggcgacgggcatcccaatataaatagcaagaccgat > 2:208599‑M1/1‑3 (MQ=255) | GCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACAGGTTCTATCCAGACCTGAATATTCTCCCCACGATCGGCTATCCGCCTGATGACCACCGAGTGCGCGGAAGCACTGTCACTGATGACCCGCGATACCTGCGCAGGCGTTGT > NC_000913/3110358‑3110838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |