| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,825,796 | Δ4,947 bp | srlA–[gutQ] | srlA, srlE, srlB, srlD, gutM, srlR, [gutQ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2825796 | 2830742 | 4947 | 37 [0] | [0] 36 | srlA–[gutQ] | srlA,srlE,srlB,srlD,gutM,srlR,[gutQ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2825795 | 0 (0.000) | 36 (0.610) | 34/494 | 0.4 | 100% | intergenic (‑219/‑37) | mltB/srlA | membrane‑bound lytic murein transglycosylase B/sorbitol‑specific PTS enzyme IIC2 component |
| ? | NC_000913 | 2830743 = | 0 (0.000) | coding (931/966 nt) | gutQ | D‑arabinose 5‑phosphate isomerase GutQ | |||||
GAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGCATTCTTCCGCTGTTGATTAGCCTGCTGGTTATCATGAACGCACTGATTAATTTTATCGGTCAGCATCGTATTGAACGTTTTGCTCAACGTTGCGCCGGTAACCCTGTTTCCCGTTACCTACTG > NC_000913/2825546‑2826041 | gAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGt > 1:468335/1‑250 (MQ=255) aTGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgc > 1:230768‑M1/1‑244 (MQ=255) gAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattat > 1:17910‑M1/1‑219 (MQ=255) cAGATTCAACCAGGGGCAAATATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcc < 2:453947‑M1/251‑48 (MQ=255) aTTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatccc > 1:148993‑M1/1‑201 (MQ=255) gccaGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCCTTGCCCGATTCGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTGTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggattgctttcaggccgggattatttaatccttcaatcccagaaggg < 2:379059‑M1/250‑56 (MQ=255) tAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACCCTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttactccttcaatccatgacgtttcgccagccgatgcagg > 2:128358‑M1/1‑179 (MQ=255) cGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgt < 1:301462‑M1/251‑83 (MQ=255) gATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccag < 1:343325‑M1/251‑115 (MQ=255) ggACTTTACATAACTCAACTCATTCCCCTCGATATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttaaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttcaagcatccgcgcgcaggcagcccagttgtg > 1:179654‑M1/1‑132 (MQ=255) aCTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACGCTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgat < 2:421682‑M1/251‑122 (MQ=255) cATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgatttt > 1:368499‑M1/1‑124 (MQ=255) cGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaat < 1:437921‑M1/249‑147 (MQ=255) ccTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTGAAATCGTTCAATCGGATTAGATTAGGTGGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcac < 2:238249‑M1/251‑155 (MQ=255) tCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgac < 1:147973‑M1/231‑143 (MQ=255) tCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgac > 2:147973‑M1/1‑89 (MQ=255) ttCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttct < 1:320254‑M1/250‑169 (MQ=255) cAAATTAAAATATTTATCTTTCAGTTTGCGATCAAAATAACACGTTTAACTCTTTCAATCTGATTAGATTAGGTTGCCGTcccctgcagtatttctatcaggccgggattattgaatccttaaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgccttagcgcttctgt < 2:242189‑M1/250‑171 (MQ=255) aTTAAAATGTTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATATTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgcaagccgatgcaggttggcgaagtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttttgacagtgcctgacgaatcgtttcacgctggaacgcttctgtcgct > 2:195380‑M1/1‑77 (MQ=255) ttCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCGGATTAGATAAGGTTGCCGTaacctgcaggattactatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttg < 2:48785‑M1/249‑189 (MQ=255) cATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgctt > 1:38851‑M1/1‑59 (MQ=255) cATTTTGCGATCAAAAGAACCCTTTTAAATCGTTCAATATGGTTAGATTAGGTTGCCGTaacctgcaggatttctatcagtccggctttatttaatccttcaacgccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcgtccgcgcgcaggcagcgcagttgtgatgattttgtgccagttcctgacgattagtttcacgctggaacgcttctgtcgcttcactcagtttttgctt < 2:319588‑M1/250‑192 (MQ=255) tttGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaac > 1:25163‑M1/1‑56 (MQ=255) aaaaTAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcacc < 1:262631‑M1/251‑205 (MQ=255) cacTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgcca < 1:253424‑M1/251‑212 (MQ=255) cacTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggaagccccgttgtgatgattttgtgccagtgcctgacgaataggttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgcc > 1:15411‑M1/1‑40 (MQ=255) cTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcgcgcaggttttgcttaacaacgggcaccgccgccact > 2:91095‑M1/1‑38 (MQ=255) aaaTCTTTCAATCTGGTTACATTAGGATACCGTaacctgcaggatttctataaggccgggattatttaatccttcactcccagacgtttcgccagccgatgccggttgtcgacgtcggtttccagcatcggcgagcaggaagcccagttgtgatgattttgtgccagtgcatgaagaatagattcacgctggaacgcttctgtcgattcacgcaggttttgcttaacaacgggcaccgccgccacttctgg > 2:410988‑M1/1‑33 (MQ=255) aTCTTTCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcg > 1:314408‑M1/1‑31 (MQ=255) tttCAATCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcgtcg > 1:277321‑M1/1‑28 (MQ=255) aaTCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcgtcggca > 1:287151‑M1/1‑24 (MQ=255) aTCTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgctgcaggttggcgacgccggtttccagcatccgcgcgcaggcagcccagttgtgatgactttgtgccagtgcctgacgcatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcgtcggcaac > 1:402522‑M1/1‑23 (MQ=255) cTGATTAGATTAGGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcgtcggcaacgt > 1:181753‑M1/1‑21 (MQ=255) attagattagGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcgtcggcaacgtcac > 2:196901‑M1/1‑18 (MQ=255) agattagGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcgtcggcaacgtcacctc > 1:229765‑M1/1‑15 (MQ=255) gattagGTTGCCGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcgtcggcaacgtcacctc > 1:376984‑M1/1‑14 (MQ=255) ccGTaacctgcaggatttctatcaggccgggattatttaatccttcaatcccagacgtttcgccagccgatgcaggttggcgacgtcggtttccagcatccgcgcgcaggcagcccagttgtgatgattttgtgccagtgcctgacgaatagtttcacgctggaacgcttctgtcgcttcacgcaggttttgcttaacaacgggcaccgccgccacttctggcgtcggcaacgtcacctcaggaaaagca > 2:357091‑M1/1‑4 (MQ=255) | GAAGCAATGTTACATAACGACGCTTGAACATGAGGGGTCCATTTAACAGATTCAACCAGGGGCAAGTATGGTAAAGCATCACGCCCCGCACAAGGAAGCGGTAGTCACTGCCCGATACGGACTTTACATAACTCAACTCATTCCCCTCGCTATCCTTTTATTCAAACTTTCAAATTAAAATATTTATCTTTCATTTTGCGATCAAAATAACACTTTTAAATCTTTCAATCTGATTAGATTAGGTTGCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAATGATAGAAACCATTACTCATGGTGCAGAGTGGTTTATCGGGCTGTTCCAAAAGGGCGGAGAGGTGTTTACCGGGATGGTGACCGGCATTCTTCCGCTGTTGATTAGCCTGCTGGTTATCATGAACGCACTGATTAATTTTATCGGTCAGCATCGTATTGAACGTTTTGCTCAACGTTGCGCCGGTAACCCTGTTTCCCGTTACCTACTG > NC_000913/2825546‑2826041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |