| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,056,115 | 0 | A | C | 28.2% | 134.9 / 10.5 | 72 | G75G (GGT→GGG) | glnL | protein histidine kinase NtrB |
| Reads supporting (aligned to +/- strand): ref base A (37/14); new base C (0/20); total (37/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.18e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTTTGCTGAGCAGCTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGC > NC_000913/4055867‑4056363 | gCTTTGCTGAGCAGCTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAAcc < 1:536749/251‑1 (MQ=255) cTTTGCTGAGCAGCTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑t > 2:64203/1‑251 (MQ=255) ggAGCAGCTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGcccc < 2:614993/250‑1 (MQ=255) gAGCAGCTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCg > 1:99782/1‑251 (MQ=255) aagcagcTGCGCCGCGCCACGTAAAACGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAACTAACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGATATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCg > 1:467841/2‑251 (MQ=255) agcagcTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGACCCGc > 1:178624/1‑251 (MQ=255) cgccgcgccACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGAc > 2:246293/1‑251 (MQ=255) gccgcgccACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACt > 2:8220/1‑251 (MQ=255) cACGTAAACAGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGCGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTCAAACC‑TTGCCCCGCCTCCAGACTTTCTTGc > 2:373521/1‑251 (MQ=255) cGTAAACCGCCAAGCGGATTTTTACTCTCATGTGCCAGCCCGCGCACAAAACCCCGGG‑CAGCACCC‑TGCTGGGCGTCCTGTGGTTTTTCTTGCTTTAGGCGGCGCGGTTTATCCATCGGAGCCATCCCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGCCACAGAAAGGATATGCGAGCCCCCGTCGATGACCAGCGTCACTTCTTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCAt < 1:574749/251‑1 (MQ=255) aaaaCCGCAAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCACCC‑TGCTGGGCGTGCTGTAGCTGTCCCTGACTAAAGCGGCGCTGGTTATCCATCGGAGCAATCTCCAGAAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATAGGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCa < 1:528587/250‑1 (MQ=255) ccGCCAAGCGGTTTTTTAATCCCATGTGCCAGGCCGCCCACAAAACCACGGG‑CA‑CAACCCGGCTGGGCGTGCTGTGGCTGTTCCTGCCTAAAGCGGCGCTGGTTATCCATCGGGCCCATCTCCAGAAGGATCATGCCGTCCGGCATCCG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGCCCAGCGTCATTTCGTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTc < 1:389281/251‑1 (MQ=255) ccGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTc > 2:68442/1‑251 (MQ=255) cGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCg > 2:420872/1‑251 (MQ=255) ccAAGCGTATTTTTAACTTCAGTTCCCAGGCGGCGCACAAAATCACGGG‑CAGCACCC‑GGCTGGGCGTGTTGTAGTTGTCCCTGACTTAAGCGGCGCTGTTTATCCATCGGAGCCATCTCCAGAAGGATCATGCCGTCCGGCATCCT‑CGGGGCCGTCAAAGAAGGGATATGCGAGCCCCCGTCGATGCCCAGCTTCCCTGCTTTTT‑CGTTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGat < 1:524570/251‑1 (MQ=255) aaggcgtaTTTTAAATCTCGTGGCCCAGGCCGCGC‑CTAAAACACGGGGCAACAGCC‑TGCTGGGCTGGCTTTGGCTTTCCCTGACTAACGCGGCTCTGTTTACCCATCGGAGCCTTCCCCAGCAGGATCATGCCGCCCGGCATACG‑CTGGGCCTGAAGAAAAAGAATATGCGACCCCCCCTCCATGACCAGCGTCACT‑CCTTATTCGTTAAACCC‑GTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGata < 2:634590/244‑1 (MQ=255) aagcgattttttAATCTCATGTGCCGGCCCGCGCCCTAAACCACGGG‑CGGAACCC‑GGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGACCCATCTCCAGCAGGATCAGGCCGCCCGGCATACG‑CTGGGCCGTCACAGAAAGGATAGGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGTTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGatat < 1:100797/244‑1 (MQ=255) gATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAAt > 1:582096/1‑251 (MQ=255) gATTTTTAACCCCATGGGCCAGGCCGCCCACTAACACACGGG‑CAGCCACC‑TGCGGGGCGGGCTGTGTCTTTTCGTGACTTAGGCGGCGGTGGTTATCCAGCGGCGCCATCCCCGGAGGGTTCATCCCGTCCGCCATCCG‑CTGGGCCGTCAAAGAAAGGATATGCGAGCGCCCTTCGATGCCCAGCGCCTCTTCTTTAT‑CGTTAAAACC‑TTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAAt < 2:428138/251‑1 (MQ=255) tttaatctctggtcccggcccGCGCACAAAACCACGGG‑CAGCAACC‑TGCTGGGCGTGCTTTAGCTGTCCTTGCCTTAAGCGGCCCTGGTTACCCATCGGGCCCTTCCCCAGCAGGACCATGCCGCCCGGCATACG‑CGGGCCCGTCACAGAAAGGATATGCGAGCCCCCGTCGAGGCCCAGCTTCACTTCGTTAT‑CGGTAAACCT‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATgag < 1:359258/231‑1 (MQ=255) accatctggggccgggccgggccatAAATCTCGGG‑AGGCACCC‑TGCGGGGCGTGCTGTATCTGTTCCTGCCTTAGGCGGCGCTGGTTATCCATCGGACCCACCTCCAGCAGGATCATGCCGTCCGGTATCCG‑CTGGGCCGTCACAGAAAGTATATGCGAGCGCCCGTCGATGACCAGCGTCCCTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGt < 1:294783/227‑1 (MQ=255) cATGTGCCAGGCCGCGCACTAAATCCCGGG‑CAGCACCC‑TGCTGGGCGTCCTGTTGCTGTTCCTGCCTTAAGCGGCGCTGGTTATCCATCGGACCCATCCCCAGCAGAATCATGCCGTCCGCAATACG‑CTGGCCCGTCACAGAAAGTATATGCGAGCGCCCGTCGATGCCCAGCGTCTTTTCTTTAT‑CGTTAAACCC‑TTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCt < 1:407868/250‑1 (MQ=255) cATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGAGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTc > 1:555931/1‑251 (MQ=255) aTGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGCCTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTc > 2:511583/1‑250 (MQ=255) gCCAGGCCGCCCACTAAATCACGGG‑CAGCACCC‑TGCGGGGCGTGCTGTAGCTGTCCCTGCTTTAGGCGGCTCTGGTTACCCAGCGGAGCCATCTCCGGCAGGATCTTGCCGCCCGGCATCCG‑GTGGCCCTACACAGAAAGAATATGCGAGCCCCCGTCGTTGACCAGCGTCTCTTCGTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACa < 1:390667/250‑1 (MQ=255) gCCGCGCACAAAACCGCGGG‑CAGCAACC‑TAGTGGGCGTGCGGTTGCTGTACCTGATTTATGCGGCTCTGGTTATCCATCGGATCTATCCCCAGGAGGATCATGCCGCCCGGAATCCG‑CTGGGCCGTCACAGAAAGGATAGGCGAGCCCCTGTGGATGCCCGGCGTCTCTTCGTAAG‑CGGTAAAACC‑TTGCACCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCg < 1:301350/251‑1 (MQ=255) gcgcACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGt > 2:59196/1‑250 (MQ=255) cACTACATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACg > 1:635370/1‑251 (MQ=255) aaaTCACGCG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCAATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTACAGTCTTTCTTGCATCAGCTCGATATTTAATGAGCAGCAGCTCAACAGTTCCGGTAACGgtgt > 2:241418/1‑251 (MQ=255) aaTCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCCGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGgtgt > 2:50551/1‑250 (MQ=255) aaTCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGgtgt > 2:560151/1‑250 (MQ=255) aaTCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGgtgt > 1:488714/1‑250 (MQ=255) cGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCaa > 1:158981/1‑250 (MQ=255) ggg‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAAc > 2:381959/1‑251 (MQ=255) g‑cagcaACC‑TGTGGGGCGTGTTGTTGCTGTTCCTGATTTAAGCGGCGCTGGTTATCCAGCGGGGCCATCTCAAGAAGGATCATGCCGCCCGGCATACG‑CGGGGCCGTCACAGAAAGGATATGCAAGCGCCCTGCGATGACCAGCGTCACTTGGTTAG‑CGGTAAAACC‑TGGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACaa < 1:242043/251‑1 (MQ=255) cagcaCCC‑TGCTGGGCGTGCTGTAGCTGTTCCTGCCTAAGGCGGCGCTGGTTATCCAGCGGAGCCATCCCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCAAAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAAt < 1:420872/251‑1 (MQ=255) caACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGATATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTg > 2:533012/1‑251 (MQ=255) ccccctggggcgtcgggtggttcttCCTGTCTTACGGGGCGTTGGTTACCCACCGGAGCCATCCCCAGCGGGATCAACCCGCCCGGCA‑ACGGTTGGGCCGTCACAGAAAGATTATGAGACCGCCCTCCGATGACCCGCTTCACTTCTTTAT‑CGTTAAATCC‑TTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCg < 2:221640/228‑1 (MQ=255) gctgGGCGTGCTGTAGCTGTTCCTGACTTAAGCGCCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTACCGGTGTACCAAACAATTTGCggg > 1:514632/1‑249 (MQ=255) gggCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCtt > 2:593606/1‑251 (MQ=255) tAGCTGTCCTTGACTTAAGCGGCGCTGGTTATCCTTCGGAGCAATATCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGGCACAGAAAGGATATGCGAGCGCCCGTGTATGCACAGCGTCCCTACGCTAT‑CCGTAACACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGTTATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTTACAAGCAATTTGCGGGTGCGTTGGGCgcgct > 2:497183/1‑247 (MQ=255) gCTGTTCTGGACTAAAGCGGCGCTGGTTATCAAGCGGAGCCACCTCCAGCAGGATCTTGCCGCCAGCCATCCG‑CTGGTCCGCCACATAAAGTATGTGGGAGCGCCCGTCGATCACCAGCGTCACTTCGTTAT‑CGTTAAAACT‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAg < 1:48037/250‑1 (MQ=255) cccTGACTTAAGCGGCGTTGTTTACCCATCGGAGCCATCCCCAGCAGGATCAGGCCGCCCGGCATACG‑CTGGGCCGTCACAGAAAGGATAGGCGAGCGCCCGTCGATGCCCAGCTTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGttgttg < 1:204968/250‑1 (MQ=255) gggcgCTGGTTATCCATCGGAGCCATCTCCAGAAGGATCATGCCGCCCGGCATACG‑CTGGGCCGTCACAAAAAGGATATGCGGGCGCCCGGCGATGACCAGCGTCACTTCGTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGtt < 1:489163/250‑1 (MQ=255) ggcgCTGGTTATCCATCGGAGCCATCTCCAGCAGGTTCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTg > 1:305983/1‑251 (MQ=255) gcgtgggTTATCCGTCGGACCCATCGCCAGAAGGTCCTTCCCGCCCGGCATACG‑CTGGGCGGTCACAGAAAGGATGTGCGAGCGCCCTCCGATGACCAGCGTCCCTCCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTgg < 1:567333/246‑1 (MQ=255) cgcTGTTTATCCAGCGGAGCCATCTCCAGCAGGATCAGGCCGCCCGGCATACG‑CGGGGCCGTCAAAGAAAGGATAGGCGAGCGCCCGTCGATGCCCAGGGTCTTTTCGTTTG‑CGGTAAACCC‑TTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGc < 1:8220/251‑1 (MQ=255) ttATCCATCGGACCCATCTCCAGCAGGATCATGCCGTCCGGCATCCG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAAt < 1:553296/250‑1 (MQ=255) aTCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGAGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAGCAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCACTTGTTGCGCGGCAGGGTTGGCGTAGTGGATCGc > 2:384954/1‑251 (MQ=255) ggAGCCATCTCCAGGAGGATAAGGCCTCCCGGCATACG‑CTGGGCCGCCACAGAAAGGATATGCGAGCCCCCGTCGATGACCAGCGTCCCTTCGTTAT‑CG‑TAAAACCCTTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAg < 1:208010/251‑1 (MQ=255) gcagGATCAGGCCGTCCGGCATACG‑CTGGGCCGTCACAAAAAGGATATGCGAGCGCCCGCCGATGACCAGCGTCACTTCGTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGAtt < 1:361416/251‑1 (MQ=255) acacggCCGTCGGGCTTGCG‑CTGGGCCGTCACAGAAAGTTTATGGGGGCCCCCGTCGATCCCCTGCGTCACTTGGTTAT‑CGTAAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGGCATCGATTAACaa < 2:496728/246‑1 (MQ=255) cGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGCAAAACC‑TTGCCCCGCCTCCAGCCTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCGGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTa > 1:520342/1‑250 (MQ=255) aTACG‑CTGGGCCGCCAAAGAAAGGATATGCGAGCCCCCTTCGATGCCCAGCGTCACTTCGTTAT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAg < 1:341224/251‑1 (MQ=255) cG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCg > 1:556014/1‑250 (MQ=255) atatGCGAGCGCCCGTCGATGACCAGCGTCTCTTCTTTAT‑CGGAAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATc < 1:16905/251‑1 (MQ=255) atatGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGAATTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGCGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGGTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGGTAATCAGCGAGTTGAGGATCTGCCCAACATc > 2:57474/1‑251 (MQ=255) atatGCGAGCCCCCGTCGATGCCCACCGTCACTTCGTTAT‑CGGTAAACCC‑TTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATc < 1:246293/251‑1 (MQ=255) atGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCgg > 2:409430/1‑251 (MQ=255) gAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGGAATGGATCGCCAGGTTGTCCTCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTg > 2:195564/1‑251 (MQ=255) gcCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCGTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGAGCTGCCCAGCATCGCGCTGCGTg > 2:337256/1‑251 (MQ=255) cgctGACCAGCCTCATTTCGTTAC‑CGGTAAAACG‑CGGCACCGCCTCCAGCCTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAGCAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGGGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGtt < 2:475788/248‑1 (MQ=255) cccAGCTTCACTTCGTTAT‑CGTTAAACCC‑TTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCAt < 1:394074/250‑1 (MQ=255) cACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCCGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGt > 1:216606/1‑251 (MQ=255) ccTTCGTTAT‑CGGAAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGt < 2:105694/249‑1 (MQ=255) aCTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCTTGCCTGTTGCCATAAAGCAGtc > 1:87654/1‑251 (MQ=255) aCTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGt > 1:105694/1‑250 (MQ=255) cGTTCT‑CGGTAAACCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCt < 1:365264/251‑1 (MQ=255) gTTAT‑CGAAAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTg < 1:409430/251‑1 (MQ=255) ttAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTg > 2:33900/1‑250 (MQ=255) aT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAAc > 1:320579/1‑251 (MQ=255) cgttAAAACC‑TGGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACa < 1:617209/247‑1 (MQ=255) aaaCC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGc > 1:438926/1‑251 (MQ=255) aaaCC‑TTCCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCATCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGc < 1:290255/251‑1 (MQ=255) | GCTTTGCTGAGCAGCTGCGCCGCGCCACGTAAACCGCCAAGCGGATTTTTAATCTCATGTGCCAGGCCGCGCACTAAATCACGGG‑CAGCAACC‑TGCTGGGCGTGCTGTAGCTGTTCCTGACTTAAGCGGCGCTGGTTATCCATCGGAGCCATCTCCAGCAGGATCATGCCGTCCGGCATACG‑CTGGGCCGTCACAGAAAGGATATGCGAGCGCCCGTCGATGACCAGCGTCACTTCGTTAT‑CGGTAAAACC‑TTGCCCCGCCTCCAGACTTTCTTGCATCAGCTCGATATTTAATGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTGTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGC > NC_000913/4055867‑4056363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |