Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,166,114 Δ7,312 bp [ygiS][ygiN] [ygiS], mqsA, mqsR, ygiV, ygiW, qseB, qseC, ygiZ, mdaB, [ygiN]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3166114 3173425 7312 81 [1] [0] 80 [ygiS]–[ygiN] [ygiS],mqsA,mqsR,ygiV,ygiW,qseB,qseC,ygiZ,mdaB,[ygiN]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 31661131 (0.010)80 (1.020) 71/494 0.1 99.4% coding (1606/1608 nt) ygiS putative deoxycholate binding periplasmic protein
?NC_000913 3173426 = 0 (0.000)coding (285/315 nt) ygiN putative quinol monooxygenase YgiN

GGTCAACATCACCGTCAGGCGGTATTGGATCAGTTTGCTAAAATCGTTCCAACCGTACTGAAAGAAGAAGGTTGCCACGGCTATGCGCCAATGGTGGATTGCGCAGCTGGCGTGAGTTTCCAGTCTATGGCACCGGATTCTATCGTGATGATTGAGCAGTGGGAAAGCATCGCGCATCTTGAAGCGCATCTGCAAACCCCGCACATGAAGGCGTATAGCGAAGCCGTAAAAGGTGACGTGCTGGAGATGAATATCCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCAAGCGTGGTTT  >  NC_000913/3173178‑3173670
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                    
atcaccaataaacggcaacgcacggtccatgatcacgaacatggagtagtttaaggaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcgatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGa                                                                                                                                                                                                                                                     >  1:591712‑M2/249‑250 (MQ=255)
 tcaccaataaacggcaacgcacggtccatgatcacgtacatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgctaaaggcatcaGAat                                                                                                                                                                                                                                                   >  1:58481‑M2/248‑251 (MQ=255)
  caccaataaacggcaacgcacggtccatgatcacgtacatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAat                                                                                                                                                                                                                                                   <  1:231415‑M2/4‑1 (MQ=255)
         aaacggcaacgcacggtccatgatcacgtacatggcgtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgatccgacggcgataaaggcatcaGAATAACcgtct                                                                                                                                                                                                                                           >  2:530139‑M2/240‑249 (MQ=255)
                aacgcacggtccatgatcacgtacatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAg                                                                                                                                                                                                                                    <  1:403541‑M2/19‑1 (MQ=255)
                 acgcacggtccatgatcacgtacatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGc                                                                                                                                                                                                                                   <  1:504580‑M2/20‑1 (MQ=255)
                  cgcacggtccatgatcacgtacatggagtagtttaagtaggcgttttccgtcaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggcgatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGcc                                                                                                                                                                                                                                  >  2:519041‑M2/231‑251 (MQ=255)
                      cggtccatgatcacgtacatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAggg                                                                                                                                                                                                                              <  1:303118‑M2/25‑1 (MQ=255)
                       ggtccatgatcacgtacatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGCATTCTGCAGCCAggg                                                                                                                                                                                                                              >  2:287795‑M2/226‑250 (MQ=255)
                           catgatcacgtacatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGAttt                                                                                                                                                                                                                          >  2:26012‑M2/222‑250 (MQ=255)
                                  acgtacatggagtagtttaagaaggcgttttccggaaatgcaggtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagaacaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGTGATTTAATccttc                                                                                                                                                                                                                  <  2:370078‑M2/37‑3 (MQ=255)
                                      acatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTg                                                                                                                                                                                                              <  1:320697‑M2/41‑1 (MQ=255)
                                      acatggagtagtttaagtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTg                                                                                                                                                                                                              >  1:257015‑M2/211‑251 (MQ=255)
                                          ggatgagtttaagtagtcgtgttccgtaattccatgtagggcaaggcgctctgccatatggctcattaagtctgatgccgctacttattcgccagccttcaaaggggcaatattgccggagatacaacattatcggccgcgtcgagtcacaggagatcaacgtgaatagctccgccgggtgtgctccgacggcgataaaggcatcaTAATATCCGTATTCTGCATCCAGGGATTTAATCCTGCCTTGttt                                                                                                                                                                                                           <  2:44302‑M2/44‑1 (MQ=255)
                                                     agtaggctttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATcc                                                                                                                                                                                               <  1:356591‑M2/56‑1 (MQ=255)
                                                      gtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCt                                                                                                                                                                                              >  1:319967‑M2/195‑251 (MQ=255)
                                                      gtaggcgttttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattccacaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCt                                                                                                                                                                                              <  2:225168‑M2/57‑1 (MQ=255)
                                                               ttccgtaaattcatgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGc                                                                                                                                                                                      <  2:465722‑M2/65‑1 (MQ=255)
                                                                          catgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTcc                                                                                                                                                                          <  1:637858‑M2/77‑1 (MQ=255)
                                                                          catgtagcgcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatagtgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTc                                                                                                                                                                           <  1:239108‑M2/76‑1 (MQ=255)
                                                                                  gcaaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAAcc                                                                                                                                                                  >  2:126201‑M2/167‑251 (MQ=255)
                                                                                  gcaaggcgctctgccatatcgcacattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggaaatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAAcc                                                                                                                                                                  >  1:199609‑M2/167‑251 (MQ=255)
                                                                                   caaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCt                                                                                                                                                                 >  2:370887‑M2/166‑251 (MQ=255)
                                                                                   caaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCt                                                                                                                                                                 >  2:541295‑M2/166‑251 (MQ=255)
                                                                                   caaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCt                                                                                                                                                                 >  2:89996‑M2/166‑251 (MQ=255)
                                                                                    aaggcgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTc                                                                                                                                                                <  1:547433‑M2/87‑1 (MQ=255)
                                                                                        cgctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAAtc                                                                                                                                                            <  2:605161‑M2/91‑1 (MQ=255)
                                                                                         gctctgccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAAtct                                                                                                                                                           <  1:511354‑M2/92‑1 (MQ=255)
                                                                                              gccatatcgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTcc                                                                                                                                                         <  2:83343‑M2/94‑1 (MQ=255)
                                                                                                 atatcgcttattaattctgattcctcaactgattcgccagacttcaaaggggcaatattgccggggatcctacattatctgccgcgtcgagtcacaggagatcaaagtgaatagcgccgccggacgttctcagacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGGTCTTTCATTAAAACCTCAATCTCCGCCATg                                                                                                                                                   <  2:467955‑M2/100‑1 (MQ=255)
                                                                                                    tcgctcattcgttctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCg                                                                                                                                                >  2:185754‑M2/149‑251 (MQ=255)
                                                                                                     cgctcattaattctgattcctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCATATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGc                                                                                                                                               >  1:216640‑M2/148‑251 (MQ=255)
                                                                                                                       cctcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGt                                                                                                                             <  2:40040‑M2/122‑1 (MQ=255)
                                                                                                                         tcaacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTg                                                                                                                           >  1:51815‑M2/128‑251 (MQ=255)
                                                                                                                         ccaacttattcgccagccttcaaaggggaaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTg                                                                                                                           <  2:113525‑M2/124‑1 (MQ=255)
                                                                                                                           aacttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCACCATGTCGCCTTTCTCTTGCAACCAGTTgcg                                                                                                                         >  1:418421‑M2/126‑251 (MQ=255)
                                                                                                                             cttattcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaccgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTACACCTCTATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTgcggc                                                                                                                       >  2:273165‑M2/124‑251 (MQ=255)
                                                                                                                                  tcgccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATc                                                                                                                   <  1:129584‑M2/132‑1 (MQ=255)
                                                                                                                                    gccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTc                                                                                                                >  1:396263‑M2/117‑251 (MQ=255)
                                                                                                                                     ccagccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCACTCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTcc                                                                                                               >  2:388868‑M2/116‑251 (MQ=255)
                                                                                                                                         ccttcaaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGc                                                                                                           <  1:375629‑M2/140‑1 (MQ=255)
                                                                                                                                              aaaggggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTttc                                                                                                      <  1:325879‑M2/145‑1 (MQ=255)
                                                                                                                                                   ggcaatattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGc                                                                                                 <  2:343443‑M2/150‑1 (MQ=255)
                                                                                                                                                       atattgccggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCcagc                                                                                             >  2:384840‑M2/98‑251 (MQ=255)
                                                                                                                                                               ggagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATc                                                                                     >  1:230200‑M2/90‑251 (MQ=255)
                                                                                                                                                                gagatactacattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATcc                                                                                    <  1:286402‑M2/163‑1 (MQ=255)
                                                                                                                                                                   atactccattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCcatc                                                                                 >  1:316503‑M2/86‑251 (MQ=255)
                                                                                                                                                                        gcatcatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCCTCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTATTCGCCAGCAGCATCTCCATCATcg                                                                             <  2:342112‑M2/170‑1 (MQ=255)
                                                                                                                                                                        acattatctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCatcatc                                                                              <  2:53640‑M2/169‑1 (MQ=255)
                                                                                                                                                                             atctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGCATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCCCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTc                                                                         >  1:30263‑M2/76‑249 (MQ=255)
                                                                                                                                                                             atctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTc                                                                         >  1:563764‑M2/76‑249 (MQ=255)
                                                                                                                                                                               ctgccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacgacgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGt                                                                      >  1:549687‑M2/74‑250 (MQ=255)
                                                                                                                                                                                ggccgcgtcgagtcacaggagatcaaagtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAGACCTCAATCTCCGCCATGTCGCCTTACTCGTGCAACCAGTTGCGGCGATCTTCCGGGCGTTTCTTCGCCATCAGCATAGCCATCATCGCGTCAGTAc                                                                    >  2:435076‑M2/73‑251 (MQ=255)
                                                                                                                                                                                  ccgcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGc                                                                  <  1:311928‑M2/181‑1 (MQ=255)
                                                                                                                                                                                    gcgtcgagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTg                                                                <  1:367208‑M2/183‑1 (MQ=255)
                                                                                                                                                                                       tcgagtcacaggagatcaacgtgaatagcgccgccggaagtgccccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTAAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGCGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTAAGTACGCTGATc                                                             >  2:163962‑M2/66‑251 (MQ=255)
                                                                                                                                                                                        cgagtcacaggagatcaacgtgaatagcgcagccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCATCCAGTGATTTATGCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCTACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATc                                                             <  2:271746‑M2/186‑1 (MQ=255)
                                                                                                                                                                                        cgaggcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCTGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCTCCTTTCTCTTGCAACCGGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATc                                                             <  1:468557‑M2/186‑1 (MQ=255)
                                                                                                                                                                                         gagtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGt                                                           >  1:207402‑M2/64‑251 (MQ=255)
                                                                                                                                                                                          agtcacaggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTc                                                          >  2:511415‑M2/63‑251 (MQ=255)
                                                                                                                                                                                               caggagatcaacgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCAATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTtcat                                                     >  2:149092‑M2/58‑251 (MQ=255)
                                                                                                                                                                                                 ggagatcaacgtgaatagcgccgccggccgggctccgacggcgataaaggcatctGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGCCCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTtcatca                                                   <  2:77106‑M2/196‑1 (MQ=255)
                                                                                                                                                                                                          cgtgaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCTTCTTCATCATCTATAGTc                                          <  1:149119‑M2/205‑1 (MQ=255)
                                                                                                                                                                                                             gaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCaa                                        <  1:459510‑M2/207‑1 (MQ=255)
                                                                                                                                                                                                             gaatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAAc                                       <  1:236460‑M2/208‑1 (MQ=255)
                                                                                                                                                                                                              aatagcgccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACt                                      <  1:126201‑M2/209‑1 (MQ=255)
                                                                                                                                                                                                                    gccgccggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCAcc                                 >  1:397741‑M2/37‑250 (MQ=255)
                                                                                                                                                                                                                         cggacgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCCGACgg                           >  2:431132‑M2/32‑251 (MQ=255)
                                                                                                                                                                                                                          ggacgtgctccgacggcgctaaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCAATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGAACGCAGATCGTCTTCATCATCGATAGTCACCTGCACCAGACGGc                          >  2:322566‑M2/31‑251 (MQ=255)
                                                                                                                                                                                                                            acgtgctccgacggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGa                        <  1:613911‑M2/223‑1 (MQ=255)
                                                                                                                                                                                                                                        ggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATc             >  2:604696‑M2/17‑250 (MQ=255)
                                                                                                                                                                                                                                        ggcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCa            <  1:231005‑M2/235‑1 (MQ=255)
                                                                                                                                                                                                                                         gcgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTTGCCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCaa           <  2:532082‑M2/236‑1 (MQ=255)
                                                                                                                                                                                                                                          cgataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGATCGGATCa            >  1:108204‑M2/15‑249 (MQ=255)
                                                                                                                                                                                                                                           gataaaggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCAAGc         <  1:573781‑M2/238‑1 (MQ=255)
                                                                                                                                                                                                                                                 gtcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCGGCCATGTTGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGTGAGCGTTCGGATCAAGCGTGGtt   >  1:336997‑M2/8‑251 (MQ=255)
                                                                                                                                                                                                                                                 ggcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCAAGCGTGGtt   >  1:337001‑M2/8‑251 (MQ=255)
                                                                                                                                                                                                                                                  gcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCATCCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCAAGCGTGGttt  <  2:508511‑M2/245‑1 (MQ=255)
                                                                                                                                                                                                                                                  gcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCAAGCGTGGttt  <  1:33166‑M2/245‑1 (MQ=255)
                                                                                                                                                                                                                                                  gcatcaGAATAACCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCACGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCGGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGTTAGTCAACTGCACCAGTCGGCGAGTGTTCGGATCAAGCGTGGttt  >  2:113880‑M2/7‑251 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                    
GGTCAACATCACCGTCAGGCGGTATTGGATCAGTTTGCTAAAATCGTTCCAACCGTACTGAAAGAAGAAGGTTGCCACGGCTATGCGCCAATGGTGGATTGCGCAGCTGGCGTGAGTTTCCAGTCTATGGCACCGGATTCTATCGTGATGATTGAGCAGTGGGAAAGCATCGCGCATCTTGAAGCGCATCTGCAAACCCCGCACATGAAGGCGTATAGCGAAGCCGTAAAAGGTGACGTGCTGGAGATGAATATCCGTATTCTGCAGCCAGGGATTTAATCCTGCCTTGTTTGCCCGGCCATCCTGACCGGGCAATGTTCTTTCCTTTAAACCTCAATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCAAGCGTGGTTT  >  NC_000913/3173178‑3173670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.