| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,557,324 | 0 | T | G | 31.1% | 109.9 / 14.9 | 61 | T239P (ACC→CCC) | ddpF | putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF |
| Reads supporting (aligned to +/- strand): ref base T (7/35); new base G (19/0); total (26/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.21e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTGAATGCCTGATGCGTTGTTAGCAT‑CTCTACAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTGCGCCTGAACGGAGATATCCAGCGCAGAGGTTGGCTCATCAAGCACAATCACGTCAGGCTGCGAAGAGAGTGCT > NC_000913/1557083‑1557574 | ggggAATGCCTGATGCGTGGTTAGCAT‑CTCACCAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGAtg < 2:260920/248‑1 (MQ=255) gtgaatccttgttccGTTTTTAGCTT‑CTCTCCAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGAtgt < 2:302521/237‑1 (MQ=255) gCCTGATGCGTTGTT‑GCATTCTCTACAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGTTGTGCAGGt < 1:223397/251‑1 (MQ=255) gtaggCGTTGGTGGCAC‑CTCTACAGCGCCCGCCAGCACCGGAGCTCACTTCCGTCCTCCCTTATTGATAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCCCCAGCGGTTTATCAATGGCGTGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGcc < 1:630045/247‑1 (MQ=255) gATGCGTTGTTAGCAT‑CTCTACAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGAATCCAGCAATAATCAGGGGTATGGATGTGGAGGGGCCg > 1:141733/1‑251 (MQ=255) aTGCGTTGTTAGCAT‑CTCTACAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑t < 1:142054/251‑1 (MQ=255) tgttAGCAT‑CTCTACAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCa < 1:79726/250‑1 (MQ=255) aGCAT‑CTCTACAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGGGTAAGGATGTGCAGGGGGCG‑TCAGCACctgc > 1:520279/1‑251 (MQ=255) t‑ctctcCAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACctgctg < 2:501706/249‑1 (MQ=255) ctctACAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGAATCCAGCAATAATCGGGTGGATGGGTGTGCAGGTGCCG‑TCAGCACCAGCTgcgc > 1:8201/1‑251 (MQ=255) gcccgccAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAg < 1:267346/251‑1 (MQ=255) aCCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGGAAACAGCAAAAATCGGGGGGATTGATGTGGAGGAGCCGGTC‑GCAACCGCTGCGCCTCGCCCCGTTCTCCaaac > 2:91438/1‑249 (MQ=255) gAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACTTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGTTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGcc < 1:209028/251‑1 (MQ=255) aCGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGAAACCCGCAAAAATCGGGGGGATGGGTCTGCATGGGCCG‑TCAGCACCGGCTGCGCGTGGCCCCGGTCTACAAACTGCCCGTGAt > 1:313805/1‑251 (MQ=255) cgtccgtcCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGGATCCAACAATAATTGGGGGTATGGATGTGCAGGGGGCG‑TCAGGACCTGCCGCGGGGCGCCCCGTTCTTCAAACTGCCCcagaa > 1:195109/1‑249 (MQ=255) cctccCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGGATCCAGCAATAATAGGGTGTATGGAAGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTAAAATCTGCCCGAGATACATCAcc > 1:199317/1‑251 (MQ=255) ccccTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGc < 1:287534/250‑1 (MQ=255) cccTTATTGCTAATGATTGCCGGACTGCACATCCGGGGGTTGCCAGCTGGCAACGTTCGTAGAAAAAACAGCCTGGCGGCAACGTGCGGTTTCCCGGCAGATCCTTTTTACGTAATGCCCATACTGCCACCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAAGAAGCTGGTGTAGGGATGTGCAGGTGCGG‑GCAGCACCGGCTGCGCGTCGCGCAGTTCTACAATCTGCCCGAGATACATCACCGcc < 2:207602/251‑1 (MQ=255) ccTTATGGCTAATGATTGCCGGACTTCACATCCGGGTGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCATTAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGGGCGTCGCCCAGTTCTACAATCTGCCCGTTATCCATCACCGCCa < 2:456853/251‑1 (MQ=255) gCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAAACCAGCAATAATCGGGGGTATGGACGGGGAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAAACTGCCCGAGATACATCACCGCCACCCGATc > 1:16119/1‑251 (MQ=255) tAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGGATTCAACAATAATCGGGGGTATGGATGTGCAGGGGCCG‑TCAGCACCTGCTGCGCGTCGCCCCGTTCTACAATCTGCCCGCGATACATCACCCCCAccccctcgc > 1:22888/1‑245 (MQ=255) aaTGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGGGTATGGATGGGGAGGAGCCG‑GCAGCACCTGCTGCGCGGCGCCCAGTTCTTCAATCTTCCCGAGATAAATCACCGCCACCCGATCGcc > 1:23841/1‑250 (MQ=255) ggACTTCACATCCGTGGGTTGCCAGAGGGCAACGTTCGTAGAACAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGGGGGTGGATGTGCCGGGGCCG‑TCAGCACCTGCTCCGCGGCGCCCCGGTCTATAAGCTCCCCGAGATAAACCACCGCCCCCCCATctccaatataacct > 2:260913/1‑238 (MQ=255) gACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGAATCCAGCAATAATCGGGTGTATGGATGTGGAGGTGCCG‑GCAGCACCTGCTGCGCGACGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATACCTCA‑TATGACGt > 1:549510/1‑250 (MQ=255) cTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGGGTATGGATGTGCAGGGGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGCTCGCTCA‑TATGACGGATc > 1:2510/1‑251 (MQ=255) cGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGGATACAGCAATAATCGGGGGTATGGGTGTGCAGGTGCCG‑TCAGCAACTGCTGCGCGTCGCCCCGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTCTCACCG‑AGAc > 1:549199/1‑250 (MQ=255) cGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACa < 2:233167/251‑1 (MQ=255) ggTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGGATCCAGCAATAATCGGGGGTATGGGAGTGGAGGGGCCC‑TCAGCACCCGCTGCGCGGCGCCCAGTTCTACAATCTGCCCGAGATAACTCCACGCCCCCCGATCGCCCA‑TATGACGTATCACCG‑AGAAATtgt > 2:219366/1‑251 (MQ=255) gCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑a < 1:285822/251‑1 (MQ=255) cAGCGGGCAACGTTCGTATAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATTCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑aaa < 2:362511/251‑1 (MQ=255) cAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTAAAATCTGCCCCAGATACATCACCGCCACCCGAACGC‑CACTATGACGTATCACCA‑AGACATTGTGGG‑aa > 1:361363/1‑250 (MQ=255) cAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGAGAGGGAATCCACCAATAATCGGGTGGTTGGGTGTGCAGGTGCCC‑TCAGCACCCGCGGCGCGGCGCCCAGTTCTACAAACCTCCCCAGGTACACCACCCCCACCCGCTCTCTCA‑TATTATGTATccaccacaaatttgttgaa > 1:566209/1‑232 (MQ=255) gCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATc < 1:630271/251‑1 (MQ=255) ggggCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCa < 2:229081/250‑1 (MQ=255) gggCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGGATCCAGCAATAATCGGGGGGTTGGATCTGCAGGTGCCG‑TCCGCACCTGCTGCGCGTCCCCCAGTTCTACAATCTCCCCGAGCTACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACACTGTGTG‑AAATc > 1:544428/1‑249 (MQ=255) ggCAACGTTCGTAGAAAAAGCAGCCTTGCGGCTACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAAGGCCCATTCTTCCTCCAGCGGTTGATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAAGCGGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGc < 2:453033/251‑1 (MQ=255) cGTTCGTAGAAAAAACAGCTTTGCGGCAGCGTGCGGTTTCCCGGCAGATCCGTTGTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCATTTCTACAATCTGCCCGCGATACATCACCGCCACCCGATCGCTCA‑TATGACGGAGCACCG‑AGACATTGTGTG‑AAATCAGCACATa < 2:366196/251‑1 (MQ=255) aGAAAAAACAGCCTGGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAg < 1:230697/250‑1 (MQ=255) cAGCCTTGCAGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGAATCCCACAATAATCGGGTGGTTGGGTTTGAAGGGGGCG‑GCAGCAACCGCCGCGCGTCGCCCAGTTTTACCATACGCCCGCGAATCAACAAAGCCACCCCCGCGCTGA‑TATGACGTCACACCC‑AGACATTGTATG‑AAATCaaaaacaacgtcaacccgtgcat > 2:383819/1‑229 (MQ=255) gCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCGCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCCCCTGCTGCGCGTCGCCTAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGc < 2:98035/251‑1 (MQ=255) aCGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGtt < 2:8562/251‑1 (MQ=255) cGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTa < 1:518722/251‑1 (MQ=255) gTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTAc < 1:334714/251‑1 (MQ=255) gTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTAc < 1:337329/251‑1 (MQ=255) cccGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAAtt < 1:332557/251‑1 (MQ=255) aGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCg < 1:194104/181‑1 (MQ=255) gATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATc < 1:71391/251‑1 (MQ=255) aTCCGTGTTACGTAATGCCCATGCTTCCTCCAGCGGTTTAACAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGGTCTAAAAGCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTAGCACCG‑AGACATGGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTTAGGATcg < 2:574822/251‑2 (MQ=255) cGTTTTACGTAATGCCCATGCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAAACCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTgcg < 2:600182/251‑1 (MQ=255) gTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTgcgc < 1:623697/251‑1 (MQ=255) tACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTGCGCCTg < 1:592916/250‑1 (MQ=255) cGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGCAGGAAACCAGCAACAAACGGGGGGATGGGGGTGCAGGTGGCG‑TCCACACCCGCTGCGCGTCGCCCAGTTCTTCAATATGCCCGAGAAACATCACCGCCACCCGACCGCTCA‑TATTACGTATCAACG‑AGGCATTGGGTG‑GAATCAGCAAAAAGGTCAGCCCCGGAGTTTTCTGTAGCGGTTCCAGGTAATTTAGGATCTGCGCCTGAAc > 1:426176/1‑251 (MQ=255) tAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGGGGGAATCCAGCAATAATAGGGGGTATGGATGTGGAGGGGGCG‑CCAGCACCCGCTGCGCGGCGCCCAGCTCTACAATCTTCCCCAGGAACATCACCGCCACCCGATCGCCCA‑TATGCCGTATCACCG‑AGACATT‑TGTGGAAATCACCCCACAAGGCACCCCCGGGTTTTTCTGTAGCGTTACCCGTAAATTTAGGGACTGCGCCTGaaagg > 2:455430/1‑248 (MQ=255) aaTGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGGGTATGGATGTGAAGGGGCCG‑GCAGCACCTGCTGCGCGTCGCCCAGTTCTACAAACTGCCCGAGATAAATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAAGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTACATTGAGGATCTGCGCCTGAACggg > 1:392710/1‑250 (MQ=255) aTGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAACAAAAATCGGGGGTATGGATGTGCAGGTGCCG‑GCAGCACCTGCTGCGCGTCGCCCAGTTCTACAAACTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGGATCACCG‑AGACATTGTGTG‑CAATCAGCACATAAGGCAGCCCGTGATTTTTCTTTAGCGTTACCAGGAAAATGAAGAACTGCGCCTGGACgg > 1:382819/1‑249 (MQ=255) cctccAGCGGTTTATCAATGGCGGGGAGGGAATCCAAACATAATCGGGGGTATGGAGGTGCCGGGGGCG‑TCAGCACCTGCTGCGCGTCGCCCCGTTCTACAATCTGCCCGAGATACCTCACCCCCACCCGCTCGCCCA‑TATGACCTATCACCGCAG‑CAATTTGTG‑GAATCAGCACAAAGGGCAGCCCCTGATTTTTCTGTAGCGTTACCCGTAAATTTAGGATCCGCGCCGGTACGGAGATATCCAgcgcc > 2:387957/1‑250 (MQ=255) aGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGGGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTGCGCCTGAACGGAGATATCCAGCGCAGAggg > 1:236195/1‑250 (MQ=255) gagggaATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTGCGCCTGAACGGAGATATCCAGCGCAGAGGTTGGCTCATCAAGCACAATCa < 1:219366/251‑1 (MQ=255) aaTCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTGCGCCTGAACGGAGATATCCAGCGCAGAGGTTGGCTCATCAAGCACAATCACGTc > 1:210990/1‑250 (MQ=255) aTCCAGCAATAAGCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTGCGCCTGAACGGAGATATCCAGCGCAGAGGTTGGCTCATCAAGCACAATCACGTCAg < 2:437578/251‑1 (MQ=255) gccAGCAATAATCGGGTGTATGGATGTGCAGGTCCAG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGGGATACATCACCGCCACCCGATCGCTCA‑TATGACTTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTGCGCCTGAACGGAGATATCCAGCGCAGAGGTTGGCTCATCAAGCACAATCACGTCAgg < 2:8348/250‑1 (MQ=255) tgtATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTATACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATATGCGCCTGAACGGAGATATCCAGCGCAGAGGTTGGCTCATCAAGCACAATCACGTCAGGCTGCGAAGAGAGTGct > 1:534022/1‑251 (MQ=255) | CGTGAATGCCTGATGCGTTGTTAGCAT‑CTCTACAGCGCCCGCCAGCACCGGAGCTCACGTCCGTCCTCCCTTATTGCTAATGATTGCCGGACTTCACATCCGTGGGTTGCCAGCGGGCAACGTTCGTAGAAAAAACAGCCTTGCGGCAACGTGCGGTTTCCCGGCAGATCCGTTTTACGTAATGCCCATTCTTCCTCCAGCGGTTTATCAATGGCGGGGAGGGAATCCAGCAATAATCGGGTGTATGGATGTGCAGGTGCCG‑TCAGCACCTGCTGCGCGTCGCCCAGTTCTACAATCTGCCCGAGATACATCACCGCCACCCGATCGCTCA‑TATGACGTATCACCG‑AGACATTGTGTG‑AAATCAGCACATAGGTCAGCCCGTGATTTTCCTGTAGCGTTACCAGTAAATTGAGGATCTGCGCCTGAACGGAGATATCCAGCGCAGAGGTTGGCTCATCAAGCACAATCACGTCAGGCTGCGAAGAGAGTGCT > NC_000913/1557083‑1557574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |