| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 786,855 | 0 | A | C | 38.1% | 111.3 / 11.2 | 65 | G247G (GGT→GGG) | gpmA | 2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase |
| Reads supporting (aligned to +/- strand): ref base A (35/4); new base C (0/24); total (35/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.31e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGTTTCATTCCAGT > NC_000913/786611‑787105 | gCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTgg < 1:527675/251‑1 (MQ=255) gttacgaaaaCTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTAAGAGTGG‑CGTATCCGATAAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGAAACAAAAAAGCC‑GACTCTCTTGCAGTCGGTTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTCCCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGAtct < 1:328186/242‑1 (MQ=255) gTTACTTCAACTGGAGAATGCAGTAAAAGCGCGTCGCGGGTAGGGTTTAATGGTCGGATGCGCCGCCAGAGGGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTGGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTCCTTCGCTTTACCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGAtctc < 1:225234/251‑1 (MQ=255) aCGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTc > 1:301420/1‑251 (MQ=255) gcTGGCGAATGCAGAAACAGCGCGGCGCGGGTAAGGTGTAATAGGCGGATGCGCCGAGAGGGGGG‑CGTATCCGATGAATCACCACTGGCCTGATAAGT‑CGCGCAGCGCCGCTTCAGGCAATGTGCCCCATTGTTAGAAAAAAAAAAGCC‑GACCCACTTGCAGTCCGCTTTCTCTTTTAAAACGAATTTCGTTTACTTCGCTTTCCCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCAtt < 2:143712/250‑1 (MQ=255) gggggaaagCAGAAAAAGCGCGCCGGGGGTAAGGTTTAATTGCGGGATGCGCCTACAGGGTGG‑CGTATCCGATGATACACCACAGGCCTGAAAAGT‑CGCGCAGCGTCGCATCAGGCATTGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTGGCAGTCGTCTTTCTCATTTAAAACGAATGACGTTTTCTTCGTTTTACCCTGGT‑TTAC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTAc < 1:354249/243‑1 (MQ=255) ggggAATGCAGAAAATGGGCGTCGCGGGAAAGTTTTAATGGTGGGATGCGCCGGCAGAGTGG‑CGTACCCGAAGAATCACCACAGGCCGGAAAGGC‑CGCGCAGCGTCGCATCGGGAAGGGTGCTCCATGGTTAGAAAAAAAAAAGCC‑GCCTCCCTTGCAGTCGTCTTTCTCATTTAAAACGAATGACTTTTCCTTCGCTTTCCCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTAcc < 2:287654/248‑1 (MQ=255) agAATGCAGTAAAAGCGCGTCGCGGGTAAGGGTTAATTGTCGGATGCGCTGTCAGAGTGG‑CGTATCCGATGAATAACCACAGGCCTGATAAGT‑CGCGCAACGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGAC‑GACACACTTGAAGTCGGCTTTCTCATTTTAAACGGATGAAGTTTACTTCGCTTTACCCTGGC‑TTGC‑AACCGCGGATGCTTTCACTGCTCTCTGGTCCGCATTAccc > 2:302134/2‑250 (MQ=255) gAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGACGGATGCGCCGTGAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TGGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCATCATTAccc > 2:112834/1‑249 (MQ=255) aaTGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTAccc > 2:542457/1‑248 (MQ=255) aagaaaaagggggTCGCGGTTAGGGTTAAATTGTCGGATGCCCCGTCAGAGTGC‑CTTACCCGTTAAACCCCCACAGGCCTGATAAGT‑GGCGCAGCTCCGCATCAGGCAATGTGCTCCATTGTTATCAACAAAAAAGCA‑GCCTCCCTTTCATTCGGCTTTCTCATTTTAAACGAATGACTTTTTTTTCGCTTTTCCCGGGT‑TTTC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGataat < 1:547050/239‑1 (MQ=255) gTAAAAGCGCGTCGCGGGTAAGGTTTACTTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGGTAGCAACAAACAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCGGCTTTCGCTTCGATCTCGTCAGCATTAACCAGataat > 2:327877/1‑249 (MQ=255) aaaGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGt > 2:4126/1‑251 (MQ=255) caGCGCGTCGCGGGTAAGGATTTATTGTCGGCTGCGCCGTCCGATTGG‑CGTATCCGCTGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACACAAAAACC‑TACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATTACGATTACTTCTCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATATCGTCAACATTACCCCGATAATCGCGtt > 2:382097/2‑251 (MQ=255) cgcgTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTcc > 1:182839/1‑250 (MQ=255) gcgcgGGAAAGTTTTAATTGTGGGAGGCGCCGGCAGAGTGG‑CGTATCCGAAGAACCCCCACGGGCCTGAAAAGT‑CGCGCAGCGTCGCATCGGGAAATGTGCCCCATTGTTAGCAAAAAAAAAGCC‑GACTCACTTGCAGTCGGTTTTCTCATTTAAAACGAATGACGTTTACTCCGTTTTCCCCTGTT‑TGGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCgg < 2:484049/250‑1 (MQ=255) ggctggTAAGGTTTATTTGCCGGATGGGCCGTCAGAGTGG‑CGTAGCCGATGAATCACCACAGGCTTGATAAGC‑CGCGAAGGGTGGCACCGGGAAAGTTGCTCATTTGTAAGAAAAAAAAAAGCC‑GACTCATTTGCATGCGGTTTTCTCTTTTTAAACGAATGGCTTTTCCTTCGCTTTACCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGGTTCAGCGGt < 1:409036/247‑1 (MQ=255) cgcgGTTAAGGTTTAATGGGCGGAGGCGCCGTCAGGGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGC‑CGCGCGGCGTCGCACCAGGAAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGTTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTCCCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGt < 1:100530/251‑1 (MQ=255) ggggTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCCCCACAGGCCTGATAAGT‑CGCGCAGCGTCGCACCAGGCAATGGCCTCCATGGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGGCGGCTTTCTCATTTAAAACAAATGCCGTTTACTTCGCTTTCCCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGttt < 1:442783/250‑1 (MQ=255) ggTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGc > 1:83547/1‑219 (MQ=255) aaTTGGCGGAGGCGCCGTCAG‑GTGGGCTTATCCGAAGAATCCCCACAGGCCTTATAAGT‑CGCGCAGCGTCGCACCAGGCAATGTCCCCCATTTTTAACAACAAAAAAGCC‑TACTCTCTTGCAGTCGCCTTTCTCATTTTAAACGAATCACGTTTACTTCGCTTTCCCCTGGT‑TGGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCtcgtc < 1:560974/251‑1 (MQ=255) agtgtcgcggtttgcttcggggggg‑CGTCTCCGATGAATCCCCACCGGCCTATTAGGT‑CGCGCAAGTTCTCTTCAGGCAGTGTCCCCCTTTGTTACCAAAAAAAAAGCG‑AACTCCCTTGCATCCGTCTTTTTCATTTAAAACGTATGAGGTTTCCTTCTTTTTCCCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCtcgtc < 2:358449/227‑1 (MQ=255) gTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAAc > 1:213362/1‑251 (MQ=255) tCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACt > 2:315954/1‑251 (MQ=255) gATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGC‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAAAAAAAAAGCC‑GCCTCACTTGCAGTCGGTTTTCTCATTTTAAACGAATGACTTTTACTTCGTTTTCCCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCAt < 1:55392/251‑1 (MQ=255) tGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATac > 1:587089/1‑251 (MQ=255) cgcggtcaggtggg‑CGTAACGGATGAATCCCCACTGGCCTGATAAGC‑CGCGCGGGCTCGAATGAGGCATTGTGCTCATTTGTTAGAAAAAAAAAACCG‑GCCTCACTTGCAGTCGTCTTTCTAATTTAAAACGATTGCCGTTTCCTTCTCTTTCCCTTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATacac < 2:121487/239‑1 (MQ=255) cGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACAcc > 1:391691/1‑249 (MQ=255) cGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACAcc > 1:59008/1‑249 (MQ=255) gagTGG‑CGTATACGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTATCGTCGAACTCATACACCAGCGGc > 2:101992/1‑250 (MQ=255) ggggg‑CGTATCCGAAGAATCACCCCAGGCTTGATAAGT‑CGCACGGCGCCGCATCAGGCAATGTGCTCCTTTGTTAGCAAAAAAAAAGCC‑GCCTCACTTGCGGTCGGTTTTCTCATTTAAAAGGAATGACTTTTCCTTCGCTTTCCCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCGGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCAc < 2:407455/248‑1 (MQ=255) agTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCAc > 1:301394/1‑251 (MQ=255) gggggcgtacgcgaaaaacccccacAGCCCGGATAAGT‑CGAGCACCGTCGCTTCAGGCATGGTGCTCCATTGTTCAAAACAAAAATGCC‑AACCCACTCGCGGTCGGCTTTCTCATTTTAACCGAATGACTTTTCCTCCCCTTT‑CCCCGGT‑TTGCCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCAc < 2:159953/230‑1 (MQ=255) gTGG‑CTTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCATTGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCCCTTGCAGTCGTCTTTCTCATTTTAAACAAATGACGTTTACTTCGCTTTCCCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACg < 1:531242/251‑1 (MQ=255) gTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACg > 1:331305/1‑251 (MQ=255) cggagcgtatcacaccccacAGGCCTGA‑GAGTGCGCGGAGCGTCTCAGCAGGCATTGTCCTCCATGGTGAGCAAAAAAAAAGCG‑GCGTCACTGGCAGTCGGTTTTCAAATTTAAAAGGAATGACGTGAACTGCTCTT‑CCCCTGGTGTTGC‑AGCCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAg < 2:22532/235‑1 (MQ=255) cccgttaaacccccaaaGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGTAATGTCCTCCTTTGTTAGCAA‑AAAAAAGCCCGCCTCCCTTGCAGTCGGCTTTCTCATTTTAAACGAATGACTTTTCCTTCGTTTTCCCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCgg < 1:368846/235‑1 (MQ=255) ccGATGAATCCCCCCAGCCCTGATAATG‑CGCGCAGCTCCGCAGGAGGTCTTGTCCTCCATTGTTAGCAACAAAAAAGCC‑GCCTCCCTTGCAGCCGTCTTTCTCATTTTAAACGAATGACGTTTACTCCCCTTGCCCTTGGT‑TTTC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCg < 2:64363/249‑1 (MQ=255) aaaTCACCACAGGCCTGATAAGC‑CGCGCAGCGTCGCATCAGGCAATGTTCTCCATTGTTAGCAACAAAAACGCC‑GACTCCCTTGCAGTGGGCTTTCTCATTTTAAACAAAGGACGTTTACGTCGCTTTCCCCTGTT‑TTAC‑AGCCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGatat < 1:150739/249‑1 (MQ=255) ccgccaacaactttataaggcgccaaGCGACGCAACAGCCAATGGCCTCCATTGTTACAAACAAAAAAGCC‑GACTCACTTGCTGTCTGCTTTTCCATTTTAAACGAATCCTTTTTACTTCGCTTTCCCCTTGT‑TTGA‑ATCCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATATCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAg < 1:571210/226‑1 (MQ=255) ccccacAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTTTTACCAACAAAAAAGCG‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGCCGTTTACTTCGCTTTCCCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGc < 1:605540/249‑1 (MQ=255) ccacAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTc > 1:496338/1‑251 (MQ=255) tAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCtcttc > 1:117446/1‑251 (MQ=255) aGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTcttctt > 2:120840/1‑251 (MQ=255) gCATCAGCGAATGTGATCCCTTGTTAGCAACAACAAAGCC‑GACTCACTTGAAGTCGGCTTTCTATTTTTAAACGAATGAAGTTTACTTCGCTTTACCCGGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCGCGTCAGCATTACACAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGACGAACTCATACACCAGCAGCACGCCCGTCGGGCTATTAAGCCCAAGAATATCTTCTTCGCTCATGTTATc > 2:537427/1‑250 (MQ=255) aGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGat > 1:285608/1‑250 (MQ=255) aaTGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTc > 1:382731/1‑251 (MQ=255) cATTGTTCGCAACAAAAAAGCC‑GAATCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTCTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCAGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGAAATTTCAACAgcgc > 1:148167/1‑250 (MQ=255) aTTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCAc > 1:429154/1‑251 (MQ=255) aGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTaa > 1:445448/1‑249 (MQ=255) aaaagGCC‑GACTCACTTCCAGTCGGTTTTCTCATTTTAAACGAATGCCGTTTACTTCGCTTTCCCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTAcc < 1:315954/251‑1 (MQ=255) aaaaGCC‑GACTCATTTCCAGGCCTCTTCCTCATTTAAAAAGAATGCTGTTTCATTCTCTTCCCCCTGTT‑GTGC‑CACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCg < 2:301420/251‑1 (MQ=255) aCTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCgatg > 1:442116/1‑251 (MQ=255) ttGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCATTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCgatgat > 2:471374/1‑251 (MQ=255) gtaggtttcctaaTTTGAAACGAATTAGGTTTCCTTGGTTTTCCCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCAcg < 1:133557/238‑1 (MQ=255) gTCGGCTTTCTCATTTTAAACGAATGACTTTTACTTCGCTTTCCCCTGGT‑TTGC‑ACCCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCAcgc < 1:394732/251‑1 (MQ=255) tCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCAcgcg > 1:56429/1‑251 (MQ=255) gccTTTCCCATTTAAAACATATGACGTTTCCTTCCCTTTCCCCGGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCt < 1:361374/249‑1 (MQ=255) aaaCGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCAt > 1:279351/1‑250 (MQ=255) aCGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATAcg > 2:436287/1‑251 (MQ=255) gAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATAcgcg > 1:191133/1‑251 (MQ=255) aCGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGc > 1:52411/1‑248 (MQ=255) aCGTTTACTTCGCTTTACCCTGGT‑TTAC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGc > 1:551782/1‑248 (MQ=255) cTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGttt > 1:560547/1‑251 (MQ=255) cGCTTTCCCCTGTT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGTTTCAt < 1:322458/251‑1 (MQ=255) aCCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGTTTCATTCCAGt > 2:561377/1‑251 (MQ=255) | GCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGG‑CGTATCCGATGAATCACCACAGGCCTGATAAGT‑CGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCC‑GACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGT‑TTGC‑AACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAAGAGTTACCGTGTGCAGCGATGATCACGCGCTCACCGCTCTTCATACGCGGCAGAATAGTTTCATTCCAGT > NC_000913/786611‑787105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |