Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,235,905 16376 bp→AAGTAAAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGC yjbEmalM yjbE, yjbF, yjbG, yjbH, yjbT, psiE, xylE, malH, malG, malF, malE, malK, lamB, malM

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4235905 4252280 16376 52 [0] [0] 56 yjbE–malM yjbE,yjbF,yjbG,yjbH,yjbT,psiE,xylE,malH,malG,malF,malE,malK,lamB,malM

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42359040 (0.000)43 (0.710)
+AAGTAAAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGC
42/390 0.2 100% intergenic (+497/‑2) pgi/yjbE glucose‑6‑phosphate isomerase/uncharacterized protein YjbE
?NC_000913 4252281 = 0 (0.000)intergenic (+1807/‑225) malM/ubiC maltose regulon periplasmic protein/chorismate lyase

AAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTTATGAAAAAAGTTCTGTATGGCATTTTTGCCATATCTGCGCTTGCGGCGACTTCTGCGTGGGCTGCACCTGTACAGGTGGGCGAAGCGGCAGGGTCGGCAGCAACGTCGGTTTCGGCGGGGAGTTCCTCCGCGACCAGCGTCAGCACCGTAAGCTCGGCGGTGGGTGTCGCGCTTGCGGCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGT  >  NC_000913/4235656‑4236154
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          
aaaTAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGATATTGTa                                                                                                                                                                                                                                                           >  1:72978‑M1/1‑249 (MQ=255)
 agtAGATTTTTAATTGTTTTTTATTTCGATAAATCCGCATTTTTATTGCTTTTGTTTTTATTTAACGTTTTTGAGTTTTATTTTTTTTTAAATATAATTTAACCCTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGTAAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTTTATACTCGATCCCCCCCGAATTGTTTTTGGGTAAATCCCCATTCCTTCAATGAAGGGAATTTGtaag                                                                                                                                                                                                                                                         <  2:157771/249‑4 (MQ=255)
        ttttAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaagg                                                                                                                                                                                                                                                   >  1:551840‑M1/1‑241 (MQ=255)
           tAATCGTTGATTATTTCGGAAAATACGCAGATTACTTGCTTTTGTTTTTCTTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtataggaaa                                                                                                                                                                                                                                                >  2:482021‑M1/1‑238 (MQ=255)
                   gttTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaac                                                                                                                                                                                                                                        <  1:175902‑M1/250‑21 (MQ=255)
                                         aTTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatt                                                                                                                                                                                                                 >  1:119126‑M1/1‑208 (MQ=255)
                                            aaTTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttg                                                                                                                                                                                                               <  1:383864‑M1/250‑46 (MQ=255)
                                               tGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggc                                                                                                                                                                                                           >  1:479007‑M1/1‑202 (MQ=255)
                                                gCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggcc                                                                                                                                                                                                          <  1:518892‑M1/251‑51 (MQ=255)
                                                    ttGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgct                                                                                                                                                                                                       >  1:534863‑M1/1‑197 (MQ=255)
                                                      gTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAAATTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgcta                                                                                                                                                                                                      >  1:397284‑M1/1‑195 (MQ=255)
                                                            attttaAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGTGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaagg                                                                                                                                                                                              >  2:302251‑M1/1‑189 (MQ=255)
                                                                   gTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacat                                                                                                                                                                                       >  1:432131‑M1/1‑182 (MQ=255)
                                                                            ttttATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggacaacatcaccgttcc                                                                                                                                                                              >  2:147962‑M1/1‑173 (MQ=255)
                                                                                     tATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcct                                                                                                                                                                     >  1:405278‑M1/1‑164 (MQ=255)
                                                                                            atatAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggt                                                                                                                                                              >  1:561789‑M1/1‑157 (MQ=255)
                                                                                                       aaCTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctac                                                                                                                                                   <  2:21463‑M1/251‑106 (MQ=255)
                                                                                                                 tGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctc                                                                                                                                         >  1:366948‑M1/1‑136 (MQ=255)
                                                                                                                     attcattcCAATTATCCTACATCGCCAACGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatctccgttcctggcatcctggacggtgatgcccctacggttgccctcgcc                                                                                                                                      <  2:534863‑M1/250‑119 (MQ=255)
                                                                                                                                   tCCTAAAACGCCATCGCCACTTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCAGCCCGCAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagcaaaggaaaacatcaacgtttgcacaagaaaatgccgatttgcggccgccaagtaaaggaaaacatcgccgttcctggcatcctggacggtgctgctcataaggttgccctcaccagcacgggcatcggt                                                                                                                       >  2:207263‑M1/1‑118 (MQ=255)
                                                                                                                                         aaCGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcg                                                                                                                 >  2:348334‑M1/1‑112 (MQ=255)
                                                                                                                                            gCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgta                                                                                                               >  2:303826‑M1/1‑109 (MQ=255)
                                                                                                                                             ccATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatccccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaag                                                                                                             <  2:449349‑M1/251‑144 (MQ=255)
                                                                                                                                                     aaTTCCCCGCGCCGTAATTAGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaaca                                                                                                     <  2:111888‑M1/251‑152 (MQ=255)
                                                                                                                                                               gcCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttacc                                                                                           >  1:94455‑M1/1‑90 (MQ=255)
                                                                                                                                                                  gTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccact                                                                                        >  1:547043‑M1/1‑87 (MQ=255)
                                                                                                                                                                    aaTTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttc                                                                                      >  1:69529‑M1/1‑85 (MQ=255)
                                                                                                                                                                    aaTTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttc                                                                                      >  1:577113‑M1/1‑85 (MQ=255)
                                                                                                                                                                    aaTTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccactt                                                                                       <  1:442686‑M1/250‑166 (MQ=255)
                                                                                                                                                                     aTTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttca                                                                                     <  1:3508‑M1/251‑168 (MQ=255)
                                                                                                                                                                          cATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcg                                                                                 >  2:426697‑M1/1‑79 (MQ=255)
                                                                                                                                                                           aTGCTTTAGTTGTGTATACTCGAGCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgattcccctacggttgccctcgccagctcgggcatcggtaaagcgtaaggttcaacatctttttaccacttcatgcgat                                                                               <  2:216413‑M1/251‑174 (MQ=255)
                                                                                                                                                                             gCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgatt                                                                              <  1:348334‑M1/250‑175 (MQ=255)
                                                                                                                                                                                   gTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgacgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgt                                                                       <  2:418163‑M1/251‑182 (MQ=255)
                                                                                                                                                                                      gtgtATAGTCGCTCCCTCGCGAAATGGTTTTGGGAAAATATCCATACATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcgtccgctaagtaaaggaaaacatcaccgttcctcgcatcctggacggtgattcccctacggttgccctcgccagcacgggcatctgtaaagcgtaatgttcaacatcgttttaccacgtcaggcgatttttgcgttt                                                                     <  2:15098‑M1/250‑184 (MQ=255)
                                                                                                                                                                                      gtgtATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttt                                                                    >  1:108917‑M1/1‑67 (MQ=255)
                                                                                                                                                                                               cGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGCAGGGAAATTGTaagtaaaggaaaacatcaacgttcgctaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggatgccctcgccagcacgggcatcggtaaagcgtaagattcaacatcgttttaccacttcatgcgattgttgcgtttttgatgcgt                                                            >  2:115240‑M1/1‑58 (MQ=255)
                                                                                                                                                                                                 aTCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtatt                                                         <  1:262623‑M1/251‑196 (MQ=255)
                                                                                                                                                                                                   cccgcccgAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtatta                                                        <  2:344457‑M1/250‑197 (MQ=255)
                                                                                                                                                                                                   cccgcccgAAATGTTTTTAGGTAAATCTCCATGCATTCAATGAAGGGAAATTTTaagtaaaggaaatcatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaatacctcaccgttcctggcatcctggacggtgatgtccctacggttgccctcgccagcacgggttgcggtaaagcgtaaggttcaacttcttgttacctcttcatgcgattgttgggttgtttttgcgtattag                                                       <  2:177457‑M1/251‑198 (MQ=255)
                                                                                                                                                                                                          gAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcactt                                                >  1:267990‑M1/1‑47 (MQ=255)
                                                                                                                                                                                                            aaTGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcactta                                               >  2:306640‑M1/1‑45 (MQ=255)
                                                                                                                                                                                                                      ggTAAATCTCCATTAATTCAATGAAGGGAAATTGTaagtgaaggaaaacatcaacgttcgcaaaagaaaatgccgctttgcggctgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctctccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattggtgcttttttgttgcgtattagatcacttaatttgctttgc                                    >  2:494055‑M1/1‑35 (MQ=255)
                                                                                                                                                                                                                           aTCTCCATTCATTCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctc                               >  1:354026‑M1/1‑30 (MQ=255)
                                                                                                                                                                                                                                cattcattCAATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgt                           >  2:278770‑M1/1‑25 (MQ=255)
                                                                                                                                                                                                                                  ttcattcaATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaa                         >  1:549974‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                                    cattcaATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaaac                       >  2:614178‑M1/1‑21 (MQ=255)
                                                                                                                                                                                                                                     attcaATGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaaacac                     >  1:193173‑M1/1‑20 (MQ=255)
                                                                                                                                                                                                                                         aaTGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaaacactttt                 <  1:606335‑M1/251‑236 (MQ=255)
                                                                                                                                                                                                                                         aaTGAAGGGAAATTGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagaaaaggaaaaaatcaccgttactggcatcctggacggtgatgcacctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttaaacatcgttttaccacttcatgagattgttgcgtttttgttgcgtattagataacttaatttgctttacatctaccgtaaacactttt                 >  2:322664‑M1/1‑16 (MQ=255)
                                                                                                                                                                                                                                                     ttGTaagtaaaggaaaacatcaacgttcgcaaaagaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaaacacttttctgcgatacaat     >  1:549936‑M1/1‑4 (MQ=255)
                                                                                                                                                                                                                                                        taagtaaaggaaaacatcaacgttcgcaaacgaaaatgccgatttgcggccgctaagtaaaggaaaacatcaccgttcctggcatcctggacggtgatgcccctacggttgccctcgccagcacgggcatcggtaaagcgtaaggttcaacatcgttttaccacttcatgcgattgttgcgtttttgttgcgtattagatcacttaatttgctttacatctcccgtaaacacttttctgcgatacaatgcc  >  1:555343‑M1/1‑1 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          
AAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATCCTAAAACGCCATCGCTAATTCCCCGCGCCGTAATTCGCATGCTTTAGTTGTGTATACTCGATCCCGCCCGAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTTATGAAAAAAGTTCTGTATGGCATTTTTGCCATATCTGCGCTTGCGGCGACTTCTGCGTGGGCTGCACCTGTACAGGTGGGCGAAGCGGCAGGGTCGGCAGCAACGTCGGTTTCGGCGGGGAGTTCCTCCGCGACCAGCGTCAGCACCGTAAGCTCGGCGGTGGGTGTCGCGCTTGCGGCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGT  >  NC_000913/4235656‑4236154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: