Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,619,069 Δ18,342 bp rhsB[yhiN] rhsB, yhhH, yhhI, yhhJ, rbbA, yhiI, yhiY, yhiJ, yhiM, [yhiN]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3619069 3637410 18342 71 [0] [0] 71 rhsB–[yhiN] rhsB,yhhH,yhhI,yhhJ,rbbA,yhiI,yhiY,yhiJ,yhiM,[yhiN]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 36190680 (0.000)71 (0.920) 61/494 0.1 100% intergenic (+79/‑124) nikR/rhsB DNA‑binding transcriptional repressor NikR/rhs element protein RhsB
?NC_000913 3637411 = 0 (0.000)intergenic (‑1/‑231) yhiN/pitA putative oxidoreductase YhiN/metal phosphate:H(+) symporter PitA

ACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCC  >  NC_000913/3618820‑3619310
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  
cctacgacCTCTCCGGCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGGGCAGCATGTTGCCGATGACGTTATCGTCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGCGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgt                                                                                                                                                                                                                                                  <  2:202460‑M1/248‑3 (MQ=255)
cccacgACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgt                                                                                                                                                                                                                                                  <  1:633497‑M1/250‑3 (MQ=255)
cccacgACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgt                                                                                                                                                                                                                                                  <  2:188551‑M1/250‑3 (MQ=255)
accacGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgt                                                                                                                                                                                                                                                  >  2:23141‑M1/1‑249 (MQ=255)
accacGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgt                                                                                                                                                                                                                                                  <  1:139060‑M1/251‑3 (MQ=255)
 ccacGACCTCTCCGTCGCCACTCTGCATGTGCACATCAACCACGACGACTGTCTGGAAAGCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGATCGAGCAACAAAGGGCCTCTTGCACACCGGTTTCCTCTCTAAATACCCTATCCGAgtt                                                                                                                                                                                                                                                 <  2:211846‑M1/251‑4 (MQ=255)
  cacGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttg                                                                                                                                                                                                                                                <  2:433108‑M1/251‑5 (MQ=255)
  cacGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttg                                                                                                                                                                                                                                                >  2:402398‑M1/1‑247 (MQ=255)
   ccgACCTCTCCGGCGCCCCGCTGCATGTGCACATCAGCCACGACGACTGGCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCACTTTGCTGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGTGTCCTTTGGTGAACGATCCACAAAGGGCCACTAGCACACCTGATTCCTCTTTAAATACACTAGCCGAgttgc                                                                                                                                                                                                                                               <  2:155444‑M1/250‑6 (MQ=255)
            ccGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctctt                                                                                                                                                                                                                                      >  1:81701‑M1/1‑237 (MQ=255)
             cGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctctta                                                                                                                                                                                                                                     <  1:278019‑M1/251‑16 (MQ=255)
                cGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaa                                                                                                                                                                                                                                  <  1:258126‑M1/251‑19 (MQ=255)
                cGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaa                                                                                                                                                                                                                                   <  2:121280‑M1/250‑18 (MQ=255)
                 gCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaa                                                                                                                                                                                                                                 <  1:455859‑M1/251‑20 (MQ=255)
                   cACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaa                                                                                                                                                                                                                               <  1:609737‑M1/251‑22 (MQ=255)
                           aTGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTGGCCGAAGGAAGATTGAGTCGATTGTTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACAACTGATTCCTCTCTAAATACCATATCCGAgttgcgctcctcttaaaaaaacggacgtg                                                                                                                                                                                                                       >  2:591202‑M1/1‑222 (MQ=255)
                            tgtgCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtg                                                                                                                                                                                                                       >  1:485483‑M1/1‑221 (MQ=255)
                                     cAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGAGCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgggaattgtaaa                                                                                                                                                                                                              <  2:453113‑M1/250‑39 (MQ=255)
                                             acgacTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGTGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctc                                                                                                                                                                                                      >  1:549043‑M1/1‑204 (MQ=255)
                                             acgacTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCGAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctca                                                                                                                                                                                                     <  1:191444‑M1/251‑48 (MQ=255)
                                              cgacTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctc                                                                                                                                                                                                      >  2:34819‑M1/1‑203 (MQ=255)
                                                   gtcaggaaatCGCGGTGTTGAAAGGTGACATGGGTGACGTGCATCATTGTGCCGATGACGGTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTAGCCGAgttgcgctcctcataaaagaacggacgtgaattgtaaagaatcctcagtggtc                                                                                                                                                                                               <  2:276545‑M1/247‑54 (MQ=255)
                                                     cTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaacgattcctcagtggtcgc                                                                                                                                                                                             >  1:182822‑M1/1‑196 (MQ=255)
                                                      tGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGTTTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggccgc                                                                                                                                                                                             >  1:467055‑M1/1‑195 (MQ=255)
                                                           aTCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagc                                                                                                                                                                                       <  2:307844‑M1/251‑62 (MQ=255)
                                                           aTCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagc                                                                                                                                                                                       <  1:560804‑M1/251‑62 (MQ=255)
                                                            tCGCCGTGTTGAAAGGTGACATGGGAGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagc                                                                                                                                                                                       >  1:47191‑M1/1‑189 (MQ=255)
                                                             cGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGCGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcat                                                                                                                                                                                     >  1:387545‑M1/1‑188 (MQ=255)
                                                             cGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagca                                                                                                                                                                                      <  1:407795‑M1/250‑63 (MQ=255)
                                                             cGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagca                                                                                                                                                                                      <  1:247362‑M1/250‑63 (MQ=255)
                                                               ccGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatca                                                                                                                                                                                   <  1:346082‑M1/251‑66 (MQ=255)
                                                                   gtTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaata                                                                                                                                                                                <  1:618048‑M1/250‑69 (MQ=255)
                                                                     tGAAAGGTGACATGGGTGACGTGCAGCATTGTGCCTATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatatt                                                                                                                                                                              <  2:461626‑M1/250‑71 (MQ=255)
                                                                       aaaGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattact                                                                                                                                                                           <  1:86706‑M1/251‑74 (MQ=255)
                                                                             gACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaagg                                                                                                                                                                     <  2:210552‑M1/251‑80 (MQ=255)
                                                                                   ggTGACGTGCAGCATTTTGCCGATGGCGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtat                                                                                                                                                               <  2:433300‑M1/251‑86 (MQ=255)
                                                                                       aCGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgc                                                                                                                                                           <  1:598664‑M1/251‑90 (MQ=255)
                                                                                           gcagcaTTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctg                                                                                                                                                        <  2:81701‑M1/250‑93 (MQ=255)
                                                                                              gcaTTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACTCCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaatt                                                                                                                                                    <  2:467055‑M1/251‑97 (MQ=255)
                                                                                              gcaTTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtgaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaatt                                                                                                                                                    <  1:93344‑M1/251‑97 (MQ=255)
                                                                                                            aCGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataatta                                                                                                                                      <  1:551974‑M1/251‑111 (MQ=255)
                                                                                                                                      cACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgacttgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggg                                                                                                            >  1:252035‑M1/1‑115 (MQ=255)
                                                                                                                                                 gCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgctctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaa                                                                                                 <  1:496433‑M1/251‑148 (MQ=255)
                                                                                                                                                      gCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTTCTTTGGTGAACGATCAACAAAGGGCCACTAGCACGACGGATTCCTCTCTAAATACCATATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatatgcctgaattagataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagt                                                                                            <  2:332855‑M1/251‑153 (MQ=255)
                                                                                                                                                         tGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtct                                                                                          <  2:396065‑M1/250‑155 (MQ=255)
                                                                                                                                                          gCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctat                                                                                        <  1:469411‑M1/251‑157 (MQ=255)
                                                                                                                                                             gaaggaagATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatt                                                                                     <  2:114067‑M1/251‑160 (MQ=255)
                                                                                                                                                               aggaagATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttc                                                                                   >  1:224174‑M1/1‑90 (MQ=255)
                                                                                                                                                                ggaagATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctccgtggtcgcaccagcatcaatattactaaaaggaagaatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttc                                                                                   >  1:563372‑M1/1‑89 (MQ=255)
                                                                                                                                                                 gaagATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACGCCTGATTCCTCTCTAAATACCCTATCCGAgtcgcgctcctcttaaaaaaacggacgtgaattggaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattat                                                                                                                                     <  1:221338‑M1/199‑112 (MQ=255)
                                                                                                                                                                 gaagATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgtcgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattat                                                                                                                                     >  2:221338‑M1/1‑88 (MQ=255)
                                                                                                                                                                  aagATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcact                                                                                >  1:477301‑M1/1‑87 (MQ=255)
                                                                                                                                                                      ttGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgc                                                                            >  2:281126‑M1/1‑83 (MQ=255)
                                                                                                                                                                       tGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgcccctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagatacttattttttgagtgaaatcaatacagggggcaaatcaaaaaaagtctatatttcactttgcc                                                                           >  2:336337‑M1/1‑82 (MQ=255)
                                                                                                                                                                        gAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgccc                                                                          <  1:534825‑M1/251‑171 (MQ=255)
                                                                                                                                                                            cTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgc                                                                      >  1:295905‑M1/1‑77 (MQ=255)
                                                                                                                                                                                           atgGTGAACGAGCAACGAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagatttctcagtgggcgcaccagcatcaagattactaaaaggaagtatttgactgaattatataagataattattttttgagtgaaatcgatacagggggcaaatcaaaaaaagtcgatatttcattttgccctcgccgcgagagtcactg                                                        <  2:126700‑M1/249‑189 (MQ=255)
                                                                                                                                                                                                   cGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaagccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgc                                               <  1:509318‑M1/251‑198 (MQ=255)
                                                                                                                                                                                                     aTCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgctccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctagatttcactttgcccgcgccgcgaaagtcactgataatgcgccg                                             <  1:485618‑M1/251‑200 (MQ=255)
                                                                                                                                                                                                             aGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaacgtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatg                                     >  2:75681‑M1/1‑44 (MQ=255)
                                                                                                                                                                                                               ggCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtc                                   <  1:23141‑M1/251‑210 (MQ=255)
                                                                                                                                                                                                                 ccACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcct                                 <  2:326807‑M1/251‑212 (MQ=255)
                                                                                                                                                                                                                 ccACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcct                                 <  1:332402‑M1/251‑212 (MQ=255)
                                                                                                                                                                                                                    cTAGCACACCTGATTCTTCTATAACTACCCTATCAGAgttgcgctcctcctaaaaacacggacgtgaattgtaaagattcctcagtggtcacaccagcatcaatattactacaaggaagaatttgcctgaattatctaagataattattttttgagtgaaatccatacagggcgcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgagttcatgtcctca                               >  2:196188‑M1/1‑37 (MQ=255)
                                                                                                                                                                                                                         acacCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcctcaaaatgg                         >  1:538447‑M1/1‑32 (MQ=255)
                                                                                                                                                                                                                         acacCTGATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcctcaaaatgg                         >  1:617113‑M1/1‑32 (MQ=255)
                                                                                                                                                                                                                               gATTCCTCTCTAAATACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcctcaaaagggcgtaac                   <  1:358697‑M1/251‑226 (MQ=255)
                                                                                                                                                                                                                                          aaaTACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcctcaaaatggcgtaacgtcctatgc          <  1:402398‑M1/249‑235 (MQ=255)
                                                                                                                                                                                                                                          aaaTACCCTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcctcaaaatggcgtaacgtcctatg           <  1:298990‑M1/248‑234 (MQ=255)
                                                                                                                                                                                                                                              aCCCTATCCGAtttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcctcaaaatggcgtaacgtcctatgctacatt    <  2:121572‑M1/251‑241 (MQ=255)
                                                                                                                                                                                                                                                ccTATCCGAgttgcgctcctcttaaaaaaacggacgtgaattgtaaagattcctcagtggtcgcaccagcatcaatattactaaaaggaagtatttgcctgaattatataagataattattttttgagtgaaatccatacagggggcaaatcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgttcatgtcctcaaaatggcgtaacgtcctatgctacatttg  >  2:420489‑M1/1‑9 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  
ACCACGACCTCTCCGTCGCCACGCTGCATGTGCACATCAACCACGACGACTGTCTGGAAATCGCCGTGTTGAAAGGTGACATGGGTGACGTGCAGCATTTTGCCGATGACGTTATCGCCCAGCGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCC  >  NC_000913/3618820‑3619310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: