Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,110,591 Δ24,234 bp [yghD]yghT 20 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3110591 3134824 24234 56 [0] [1] 57 [yghD]–yghT [yghD],yghE,yqhJ,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH9,yghQ,yghR,yghS,yghT

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 31105900 (0.000)56 (0.730) 52/492 0.2 100% coding (537/537 nt) yghD putative type II secretion system M‑type protein YghD
?NC_000913 3134825 = 0 (0.000)intergenic (+2/+47) yghT/pitB putative ATP‑binding protein YghT/metal phosphate:H(+) symporter PitB

GAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACAGGTTCTATCCAGACCTGAATATTCTCCCCACGATCGGCTATCCGCCTGATGACCACCGAGTGCGCGGAAGCACTGTCACTGATGACCCGCGATACCTGCGCAGGCGTTGT  >  NC_000913/3110342‑3110838
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                        
gAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACACGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTAGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTc                                                                                                                                                                                                                                                         >  2:567742‑M1/1‑249 (MQ=255)
  aTCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaa                                                                                                                                                                                                                                                      <  1:296524‑M1/251‑5 (MQ=255)
      ggTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatg                                                                                                                                                                                                                                                  <  1:277536‑M1/251‑9 (MQ=255)
        tttAATGCGCCCCGTGGCCCGGATAACTCCGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAAAAACCTTCAAGAAAAAAATTAGCTTAGAAAGCCTGGGGGAATTACTCTCGCCACGTTAACGTGAGTAAGTTTATTGATCTTAATCATCTGATTCTTcaaaaatgg                                                                                                                                                                                                                                                 >  2:48646‑M1/1‑241 (MQ=255)
         ttAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatgga                                                                                                                                                                                                                                                <  1:105308‑M1/250‑11 (MQ=255)
                  cccGGTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTGTGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgccctat                                                                                                                                                                                                                                      <  2:447084‑M1/251‑21 (MQ=255)
                         cccGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccagg                                                                                                                                                                                                                               <  1:459177‑M1/251‑28 (MQ=255)
                          ccGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccagg                                                                                                                                                                                                                               >  2:204141‑M1/1‑223 (MQ=255)
                                    cAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattt                                                                                                                                                                                                                    <  1:547825‑M1/251‑39 (MQ=255)
                                     aGTCGCTAGAACAGGAGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGAAAATAAACTTCACGAAAAAAATTAGCTTATAAAGACTGGGGGAATTACTCCCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccaggcatttt                                                                                                                                                                                                                   >  2:193536‑M1/1‑212 (MQ=255)
                                        cGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAGAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttc                                                                                                                                                                                                                  >  1:102681‑M1/1‑209 (MQ=255)
                                            agagCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaag                                                                                                                                                                                                            <  1:27708‑M1/251‑47 (MQ=255)
                                                             aTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaat                                                                                                                                                                                           <  2:503481‑M1/251‑64 (MQ=255)
                                                                               cGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagccc                                                                                                                                                                          >  1:346745‑M1/1‑170 (MQ=255)
                                                                                 aTTCCGAGTCCGTGCATCACTAAGTCTTAAAAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATATCCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATGAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgtgaattttcaggaaggttaaagcaacggcaatgctatccagttcagcccacc                                                                                                                                                                       <  2:414331‑M1/251‑84 (MQ=255)
                                                                                     cGAGTGCGGGAACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACTAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggtgaaatcaactgcaatgctatccagtacagcccaccagaa                                                                                                                                                                   <  2:228962‑M1/251‑88 (MQ=255)
                                                                                                 ccacTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCCCGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccacccgaaagaaaaattgcc                                                                                                                                                       >  2:95818‑M1/1‑152 (MQ=255)
                                                                                                            tAAGAAACCGTCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagt                                                                                                                                            >  1:382510‑M1/1‑141 (MQ=255)
                                                                                                             aaGAACCCGCCCACCAGGCGGGTTTTTGCTTTTGGATCTGACAATAAACTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaactggaaatgcccgatcgccaggaccgggccttttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagt                                                                                                                                            >  2:447348‑M1/1‑140 (MQ=255)
                                                                                                             aaGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagt                                                                                                                                            <  2:274171‑M1/250‑111 (MQ=255)
                                                                                                             aaGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcc                                                                                                                                                                                                                                          >  1:421554‑M1/1‑140 (MQ=255)
                                                                                                             aaGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcc                                                                                                                                                                                                                                          <  2:421554‑M1/156‑17 (MQ=255)
                                                                                                                  cccGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTTCTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAAGCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcacctgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatac                                                                                                                                      <  2:285738‑M1/251‑117 (MQ=255)
                                                                                                                               cGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcagg                                                                                                                         >  1:539050‑M1/1‑122 (MQ=255)
                                                                                                                                 ggTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAATTAGCTTATAAAGTTTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatg                                                                                                                      <  1:506725‑M1/251‑133 (MQ=255)
                                                                                                                                           tttGGATCTGACAATAACCTTCACGAAACAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttacc                                                                                                             >  2:74990‑M1/1‑110 (MQ=255)
                                                                                                                                                          aaCCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaac                                                                                              >  1:412277‑M1/1‑95 (MQ=255)
                                                                                                                                                          aaCCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaac                                                                                              <  1:108300‑M1/251‑157 (MQ=255)
                                                                                                                                                           aCCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacc                                                                                             <  1:36274‑M1/251‑158 (MQ=255)
                                                                                                                                                                cACGAAAAAAATTAGCTTATAACGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcacaaatggaaatgcccgatcgccaggaccgggcattttcaggcaggttaaatcaactgcattgctatccagtacagcccaccagaaagacaaattgccgccggtaaagtaaatacccacgccatcaggatgctggtttccgttttacgctgtaacccaccc                                                                                        >  2:262886‑M1/1‑89 (MQ=255)
                                                                                                                                                                       aaaaTTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccc                                                                                 >  1:278021‑M1/1‑82 (MQ=255)
                                                                                                                                                                         aaTTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccacc                                                                               >  1:455422‑M1/1‑80 (MQ=255)
                                                                                                                                                                            tAGCTTATAGAGTCTGGGGGAATTACTCTCGCCACGCTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtcaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccacc                                                                            >  2:409362‑M1/1‑77 (MQ=255)
                                                                                                                                                                             aGCTTATAAAGTCTGGGGGAATTCCTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgaccgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaatggccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaactcaccgccgtccaccacc                                                                            <  1:146327‑M1/250‑175 (MQ=255)
                                                                                                                                                                             aGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccacc                                                                            >  2:99248‑M1/1‑76 (MQ=255)
                                                                                                                                                                                  ataAAGTCTGGGGGAATTACTATCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgccagatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggctgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtc                                                                      >  1:361661‑M1/1‑71 (MQ=255)
                                                                                                                                                                                   taAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtcc                                                                     >  2:471285‑M1/1‑70 (MQ=255)
                                                                                                                                                                                            ggggAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactg                                                            >  2:28463‑M1/1‑61 (MQ=255)
                                                                                                                                                                                                  ttACTCTCGACACGCTAACGAGAGTACTTTTATTGATAATAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggctaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggcaaagtaaatacccccgccatcaggatgatggtcaccgttttacgttgtaacccaccgccgtccaccaccatcgaccctgcaactgcagacg                                                      >  2:496452‑M1/1‑55 (MQ=255)
                                                                                                                                                                                                           ccACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTaaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagccctccagaaagaaaaatggccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtcctccaccatcgtccctgcaactgcagacgagaggacgt                                             <  2:435674‑M1/251‑206 (MQ=255)
                                                                                                                                                                                                              cGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtg                                          >  1:92054‑M1/1‑43 (MQ=255)
                                                                                                                                                                                                                 tAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgtt                                        <  1:95941‑M1/250‑211 (MQ=255)
                                                                                                                                                                                                                 aaaagagagtaaTTTTATTAATATGAATCTCCTGAGACGTcaaaaatggaaaagcccgttcgccaggcccgggcattttcaggaaggttaaaacaactgaaatgctatccagtacagcccaccacaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtagcccacctccgtcctctaccatcgtccctgcaacggcagacgagaggacgtgtgtt                                        <  2:539050‑M1/246‑211 (MQ=255)
                                                                                                                                                                                                                    cGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtgg                                    <  1:220961‑M1/251‑215 (MQ=255)
                                                                                                                                                                                                                        agTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagac                                >  2:578068‑M1/1‑33 (MQ=255)
                                                                                                                                                                                                                                 aTTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatccc                       >  1:368429‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                                                 aTTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttaaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatccc                       <  1:404503‑M1/251‑228 (MQ=255)
                                                                                                                                                                                                                                       atTAATCTCCTGTTACTTcaataatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccacaaagaaaaattgcccccggtaaagtaaatacccacgccatcaggatgatggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtatgttgtggagacgggcctcccaatat                  >  2:305610‑M1/1‑18 (MQ=255)
                                                                                                                                                                                                                                         tAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggccgtgtgttgtggagccgggcatcccaatataac               >  2:562679‑M1/1‑16 (MQ=255)
                                                                                                                                                                                                                                          aaTCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgta                                                                                                <  1:213281‑M1/169‑155 (MQ=255)
                                                                                                                                                                                                                                          aaTCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgta                                                                                                >  2:213281‑M1/1‑15 (MQ=255)
                                                                                                                                                                                                                                          aaTCTCCTGATACTTcaaaaaagaaaatgcccgatcgccaggcccgggcattttcaggaaggttaaatcaactgcaatgctatccagtccagcccacccgaaagaaaaattgccgccggtaaagcaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgcgaggacgtgcgttgtggcgcagggcataccaatatactt              >  2:529870‑M1/1‑15 (MQ=255)
                                                                                                                                                                                                                                           aTCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataactg             >  2:372460‑M1/1‑14 (MQ=255)
                                                                                                                                                                                                                                               ccTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataactggcaa         <  1:279268‑M1/251‑242 (MQ=255)
                                                                                                                                                                                                                                                   aTACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacacacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataactggcaagacc     >  1:290167‑M1/1‑6 (MQ=255)
                                                                                                                                                                                                                                                       ttcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataactggcaagaccgat  >  1:504851‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                        
GAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACAGGTTCTATCCAGACCTGAATATTCTCCCCACGATCGGCTATCCGCCTGATGACCACCGAGTGCGCGGAAGCACTGTCACTGATGACCCGCGATACCTGCGCAGGCGTTGT  >  NC_000913/3110342‑3110838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: