New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2407180 =	0 (0.000)	71 (0.920)	67/492	0.1	100%	intergenic (‑539/‑381)	lrhA/alaA	DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA
	?	NC_000913	3583428 =	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

ATGTAATGAAGTTAGTATTCTTTTTAAGAA‑TCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG  >  NC_000913/3583184‑3583675                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         aTGTAATGAAGTTAGTATTCTTTTTAAGAA‑TCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTACAGGTGAtg                                                                                                                                                                                                                                                    >  1:529329/1‑251 (MQ=255)      aTGAAGTTAGTATTCTTTTTAAGAA‑TCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGcc                                                                                                                                                                                                                                               <  1:79758/251‑1 (MQ=255)           agtAGTAATCTTTTTAAGAAACCAACTTGATTAT‑TTTCTTTTTTAAGAAGAATTGATGGATTCGAAGTTAAAGGAATTCGAATAATTAAGCTCTCGAATTCAGAAACTTCAATTAAAAACCCTTTTTGC‑GTAAAATAAATTTATAGAAAATAAT‑ATGATTTTCTAAACCCCGATTTTCAAAGACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACtt                                                                                                                                                                                                                                          <  1:480212/249‑1 (MQ=255)                     tttttAAGAA‑TCAACCTGATTATCTTACTTTTTTAAGAGCTATGGATGGATTCGAAGGTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGACCGGTTAGAGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGAttt                                                                                                                                                                                                                                  >  2:319060/1‑249 (MQ=255)                         tAAGAA‑TCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTCGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAACTGAATTTTATAGAAA‑TAATGATGATTTCATAACCCCTGATCTACCAGCACGGTTAGTGATCGGGGATTATAGCCTTTCAATATTTACTTATGCCATTAAAGGTGATGCTGCCAACTTACTGATTTAgtgt                                                                                                                                                                                                                             >  1:342078/1‑250 (MQ=255)                             aa‑TCAACCTGATTATCTTACTTTTGTAAGAGCAATGGATGGAGTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAGAGGTGAGGCTGCCAACTTACTGATTTATTGTatgat                                                                                                                                                                                                                        <  2:191571/251‑1 (MQ=255)                                     cTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGttt                                                                                                                                                                                                                 >  1:34007/1‑251 (MQ=255)                                       gATTATCTTACTTTTTTAAGAGCAATGGAAGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGAGATGATGCCAACTTACTGATTTAGTGTATGATGGTGttttt                                                                                                                                                                                                               >  1:589542/1‑251 (MQ=255)                                        aTTATCTTCCTTTTTTAAGAGCACTGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTg                                                                                                                                                                                                              >  2:559381/1‑251 (MQ=255)                                                     tttAAGAGCAATGGATGCATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGAGTTTTTGAGGTGCTCCAGTg                                                                                                                                                                                                 >  2:190184/1‑251 (MQ=255)                                                           agCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTat                                                                                                                                                                                                                           <  2:632265/219‑1 (MQ=255)                                                           agCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTat                                                                                                                                                                                                                           >  1:632265/1‑219 (MQ=255)                                                              aaTGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGtt                                                                                                                                                                                        >  1:308600/1‑251 (MQ=255)                                                               aaggatggatTCGAAGTTAATGGAATACGATTATATAGCCGCTCTATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTGCTGATTTAGTGTATGATGGTGGTTTTGAGGTGCTCCAGTGGCTTCTtttt                                                                                                                                                                                       <  2:83071/249‑1 (MQ=255)                                                                  gatggatTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCt                                                                                                                                                                                     >  1:393653/1‑250 (MQ=255)                                                                    tggatTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATc                                                                                                                                                                                  >  1:254423/1‑251 (MQ=255)                                                                         tCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCt                                                                                                                                                                              <  2:254423/250‑1 (MQ=255)                                                                         tCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCt                                                                                                                                                                              <  1:349321/250‑1 (MQ=255)                                                                          cGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACA‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGCACGGTTAGTGATCGGGGATTATAGCATTTCAATACTTACTTATGACATTAAAGGTGCTGCTGCCAACTTACTGCTTTAGTGTATGATGGTGTTTTTGCGGTGCTCCCGTGGCTTCTGTTTCTATCCGCttt                                                                                                                                                                            >  2:575581/1‑249 (MQ=255)                                                                               ttAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctc                                                                                                                                                                       >  1:63105/1‑251 (MQ=255)                                                                                tAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctc                                                                                                                                                                       <  1:605648/250‑1 (MQ=255)                                                                                              tattTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTg                                                                                                                                                         >  1:380811/1‑250 (MQ=255)                                                                                                   aGCCTCGCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCAGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATCTTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGTTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑gggg                                                                                                                                                  >  2:276810/1‑251 (MQ=255)                                                                                                        ctcGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGgtggtg                                                                                                                                             >  1:321537/1‑251 (MQ=255)                                                                                                          cGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCg                                                                                                                                           >  2:108576/1‑251 (MQ=255)                                                                                                                     ccTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCaaa                                                                                                                                 >  1:376067/1‑250 (MQ=255)                                                                                                                                aaaCC‑TTTTTGCCGTAAATGAAGTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTATTGGTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGGTGCCATCTTACTGATTTAGTGTATGATGGTGTTTTTGAGAGGCGCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTGCGGCTGCTGAC‑GGGGTGGTGCGTAACGGCAAAAGCAccgccgtc                                                                                                                     <  2:553968/251‑3 (MQ=25)                                                                                                                                            ccGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCt                                                                                                           >  1:127130/1‑250 (MQ=255)                                                                                                                                              gTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAtc                                                                                                        <  2:34007/251‑1 (MQ=255)                                                                                                                                                aaaTGAATTTTCTAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGACGGTAATAATCGCTAtctc                                                                                                      >  2:286845/1‑251 (MQ=255)                                                                                                                                                    gAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGct                                                                                                  >  1:197144/1‑251 (MQ=255)                                                                                                                                                     aaTTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGctc                                                                                                 <  1:470596/251‑1 (MQ=255)                                                                                                                                                              gAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGTCAAAAGCACCGCCGGACCTCAGCGCTATCTCTGCTCTCACTGCCg                                                                                        >  2:106785/1‑251 (MQ=255)                                                                                                                                                                                  aaaCCCTGAGCTACAAGAGCGGGTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGAAATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCGATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCTTAACAGCAAAAGCACCTCCGGACATCAGCGCGATCTATGCTCTCACTGCCGTGAAACATGGCAACTGc                                                                       >  2:87969/1‑249 (MQ=17)                                                                                                                                                                                   aaCCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGt                                                                    >  1:488646/1‑251 (MQ=255)                                                                                                                                                                                    aCCCTGATCTACAAGAACGGTTAGTGATCGGGGATAATAGCATTTCAATATTTACATAAGAAATTAAAGGTGGTGATGCCAACTTGCTGCTTTAGAGTTTGTAGGGGTTTTTGAGGGCCAACAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCCGCTAC‑GACCGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCTGAGGGATCTCTGCTCTAACTGCCGTaaagccgtgacactgcagtt                                                                   >  2:586004/1‑234 (MQ=12)                                                                                                                                                                                      ccTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCa                                                                 <  2:143936/251‑1 (MQ=255)                                                                                                                                                                                                  gAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCtt                                                     <  1:106785/251‑1 (MQ=255)                                                                                                                                                                                                     cGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTtctc                                                  >  1:283050/1‑251 (MQ=255)                                                                                                                                                                                                     cGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCAGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGCGCTACAGTGGCTTCTGTTTCTATAAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTACGTAACGGCAAAAGCACCGCCGGACCTCAGCGCTATCTCTTCTCTCACTTCCGTAAAAACTGGCCACATAAGTTCACTTACCCCGcctatc                                                  >  2:67029/1‑246 (MQ=17)                                                                                                                                                                                                      ggTTAGTCATCGGGGATGCTAGCAATTCAATATTTACTTATGACAGTACAGGGGATGCTCCCAACTTACTGATTTAGTTTCAGAGGTTGGTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCGGTTCAGCTGCGGCG‑GGGGTGTTGCGTACCGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCa                                                 <  2:51273/251‑1 (MQ=14)                                                                                                                                                                                                          aGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAAccc                                             <  1:105042/251‑1 (MQ=255)                                                                                                                                                                                                             gATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGt                                          >  1:582704/1‑251 (MQ=255)                                                                                                                                                                                                                     aTTATAGAATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGAGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTACTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGAGCTATCTCTGCTATCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCAcc                                   >  1:457295/1‑250 (MQ=255)                                                                                                                                                                                                                         taGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCCGaa                               >  2:211548/1‑250 (MQ=255)                                                                                                                                                                                                                          aGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTCTCTCTGCTCTCACAGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCCTCTCAACCCGGTACGCACCAGaaac                             >  2:83407/1‑250 (MQ=255)                                                                                                                                                                                                                               ttCAATATTTCCTTATGACATTCACGGTGATGCTGCCAACTTCCTGATTTAGTGTATGCTGGTGTTTTTGAGGTGCTCCCGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAACACATGGCAACTGCCGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCAtt                        >  2:161386/1‑251 (MQ=11)                                                                                                                                                                                                                                 cAATATTTACTTATGACATTAAAGGTTATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGa                      <  2:197144/251‑1 (MQ=255)                                                                                                                                                                                                                                             aTGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGTCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGGTATGGCCATGac          >  2:571875/1‑250 (MQ=18)                                                                                                                                                                                                                                               gACATTAAAGGTTATGCTGCCCACTTACTGATTTAGTGTATGCTGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTTCTGTTCTGCTAATGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCGGCTCTCACTGCCGAAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACACGGTACGCACCAGACAATCATTGATATGACCATGAATg        >  2:194946/1‑251 (MQ=11)                                                                                                                                                                                                                                                     aaaGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTg  >  1:238690/1‑251 (MQ=11)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         ATGTAATGAAGTTAGTATTCTTTTTAAGAA‑TCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACC‑TTTTTGCCGTAAATGAATTTTATAGAAA‑TAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAC‑GGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTG  >  NC_000913/3583184‑3583675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.