| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 390,251 | Δ14,565 bp | [yaiT]–[dgcC] | 16 genes [yaiT], ytiB, insF2, insE2, yaiT, iprA, ampH, sbmA, yaiW, yaiY, yaiZ, ddlA, iraP, phoA, psiF, [dgcC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 390251 | 404815 | 14565 | 41 [0] | [0] 41 | [yaiT]–[dgcC] | [yaiT],ytiB,insF2,insE2,yaiT,iprA,ampH,sbmA,yaiW,yaiY,yaiZ,ddlA,iraP,phoA,psiF,[dgcC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 390250 | 0 (0.000) | 41 (0.530) | 37/494 | 0.7 | 100% | intergenic (‑523/‑1) | hemB/yaiT | porphobilinogen synthase/putative autotransporter YaiT |
| ? | NC_000913 | 404816 = | 0 (0.000) | coding (1114/1116 nt) | dgcC | diguanylate cyclase DgcC | |||||
TGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCAGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTACAACAACACCAATGGTGATTTCGATCAGTCCTTTAACGGCGATACCGTT > NC_000913/390006‑390499 | tgacatgtattatacgtacgCTTCAAAAACAAAATTATCAGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCACCATAAATTATATATGTCCACATTCGGACTTAGGGGAAATAATAATTGCACCATTCGTCTGTCACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATACTTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgt > 2:68689‑M1/8‑245 (MQ=255) aaTTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttt < 1:540018‑M1/251‑39 (MQ=255) atatgcaACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCACCTTATTACGTCCCTGAGGAGGGATGACAAtgacgaccggcgaaagtcatcaggatttgctgagtttttctg > 2:612430‑M1/4‑209 (MQ=255) cTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgat > 2:208328‑M1/1‑207 (MQ=255) cAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgaccggcgaaagtcatcaggatttgctgagtttttctgatttt > 1:11822‑M1/1‑204 (MQ=255) gtgCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgattttttctgatttttccatacacttcgtc < 2:622265‑M1/249‑63 (MQ=255) gCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatc < 2:109341‑M1/250‑66 (MQ=255) aTGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgc > 1:462011‑M1/1‑170 (MQ=255) ttttCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacgga > 1:105533‑M1/1‑162 (MQ=255) ccATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagccttt < 1:162478‑M1/250‑95 (MQ=255) aTTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttcc > 2:36177‑M1/1‑150 (MQ=255) tatataTGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttcc > 2:37977‑M1/1‑148 (MQ=255) atatatGTCCACATTCGGGCTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgcttagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagt < 1:249502‑M1/251‑105 (MQ=255) atGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgc < 1:596598‑M1/251‑109 (MQ=255) aTTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAAAATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcttcatcgcttcgatcactgcagcacggaagcctttctcttccagtacccgtaccgct > 2:339065‑M1/1‑135 (MQ=255) aaCGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttca < 1:118112‑M1/250‑157 (MQ=255) aaCGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttca < 1:208328‑M1/250‑157 (MQ=255) aaTCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctccaggtgagcagaccatatctttcagtgcccccgg > 1:791‑M1/1‑84 (MQ=255) cGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgt > 2:598096‑M1/1‑81 (MQ=255) gcgcGAAACATAATCTGTTTTCAATGCATTGATAATTGATGGCTCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatccggctttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgactcccggtgagcagaacatatctttcagtgcccccggatgttctac > 2:180483‑M1/1‑76 (MQ=255) cgcgAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctccc > 1:166770‑M1/1‑75 (MQ=255) cgAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgt > 1:503045‑M1/1‑73 (MQ=255) aaCATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtgtttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgccgcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttc < 1:174265‑M1/251‑182 (MQ=255) gTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgcgtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcactggtggtgcctcccggtgagcagaccatctctttcagtgcccccggatgttctcccgtttccagcaccatt > 2:614460‑M1/1‑60 (MQ=255) ttCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccattttt > 1:177040‑M1/1‑57 (MQ=255) cATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggacgcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaac > 1:540995‑M1/1‑50 (MQ=255) tGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaaccc < 1:37977‑M1/250‑204 (MQ=255) gATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaaccca < 1:515497‑M1/250‑205 (MQ=255) aTTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaacccattacc < 1:295077‑M1/251‑210 (MQ=255) aTTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagcttttctgatttttccatacacttcgtcatcgcttcgaacactgcagcacggaagcctttctcttccagtccgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgcttccagcaccatttttgcggaaaccattacc > 2:600399‑M1/1‑42 (MQ=255) tGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgcgtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaatcctttctcttccagaacgcgtaccccttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatattctcccgtttccagcaccatttttgcggaacccattaccgc > 1:240663‑M1/1‑40 (MQ=255) gATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaacccattaccgcc < 1:138565‑M1/251‑213 (MQ=255) aTGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaacccattaccgcct > 1:379853‑M1/1‑38 (MQ=255) gATCAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaacccattaccgcctg > 1:554008‑M1/1‑35 (MQ=255) aTCAACTTATTTCGTACCTGAGGAGGGATGACAAtgacgtccggagaaagtcatcagggtttgctgagtttttatgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgaaccgcttcaatggtggggtctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaacccatttccgcctgagc > 2:544093‑M1/1‑34 (MQ=255) cAACTTATTACGTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggctttgctgcgtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacgaaagcctttctcttccagtacgcataccgcttcaatggtggtgcctcccggtgagcagaccatatcttgcagtgccaccggaggttctcccgttaccagcaccatttttgcggaaccccttaccgctggagagg > 2:292697‑M1/1‑32 (MQ=255) gTCCCTGAGGAGGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacccttcgtcatcgcttcgatcactgcatcacggaagccgttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaccccattaccgcctgagcggcaaatttatac < 1:264911‑M1/251‑231 (MQ=255) gaggagGGATGACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaacccattaccgccgggccgccaactttatacccttgg > 2:204918‑M1/1‑15 (MQ=255) gACAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaacccattaccgcctgagcggcaaatttatacgcctgggcgcgtggc > 2:248281‑M1/1‑5 (MQ=255) cAAtgacgtccggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctcttccagtacgcgtaccgcttcaatggtggtgcctcccggtgagcagaccatatctttcagtgcccccggatgttctcccgtttccagcaccatttttgcggaacccattaccgcctgagcggcaaatttatacgcctgggcgcgtggcatc > 2:412183‑M1/1‑3 (MQ=255) aatgacgtacggcgaaagtcatcaggatttgctgagtttttctgatttttccatacacttcgtcatcgcttcgatcactgcagcacggaagcctttctattccagtacgcgtaccgcttcaatggcggtgcctcccggtgagcagaccatatctttcagtgcccccggctgttctcccgtttccagcaccatttttgcggaacccattaccgcctgatcggcaaatttatacgcctgggcccggggcatcc > 2:194789‑M1/1‑2 (MQ=255) | TGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGCGAAACATAATATGTTTTCTATGCATTGATAATTGATGGATCAACTTATTACGTCCCTGAGGAGGGATGACAAATGCACTCCTGGAAAAAGAAACTTGTAGTATCACAATTAGCATTGGCTTGCACTCTGGCTATCACCTCTCAGGCTAATGCAGCAAACTATGATACCTGGACTTATATCGATAATCCCGTTACAGCACTTGATTGGGATCATATGGATAAGGCAGGCACTGTAGATGGCAACTATGTAAACTATAGTGGTTTTGTCTATTACAACAACACCAATGGTGATTTCGATCAGTCCTTTAACGGCGATACCGTT > NC_000913/390006‑390499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |