| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,350 | 0 | C | T | 32.6% | 77.8 / 15.7 | 49 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| Reads supporting (aligned to +/- strand): ref base C (8/25); new base T (16/0); total (24/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.20e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGAACAATCAGTGGTACATT > NC_000913/4604100‑4604600 | aaaTAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATTCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGTTCATtttttctttttc < 2:89078/251‑1 (MQ=255)aaaTAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATTCCATGTCGCGGATCTCGTTTGCGGCGGTCATttttacgttttc < 1:299646/251‑1 (MQ=255) aTAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTttttctttttctt > 1:392024/1‑250 (MQ=255) gcgcgcAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCa < 1:44576/251‑1 (MQ=255) cAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATgaga < 1:497483/251‑1 (MQ=255) agagAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAgcgc < 2:486576/251‑1 (MQ=255) cttGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATGAGAAGGGGGCGCAGAGAgggggt > 1:508982/1‑248 (MQ=255) gaTGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTTTTCCCTGAGAAGTGAGGGGAGAGAGGG‑GTTTT‑CTTGCctgactgggatg > 2:285930/1‑246 (MQ=255) gaTGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCctgactg < 1:285930/246‑1 (MQ=255) aGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGGTTATTCAGAAAGTTTGTGGGTAACCCTTATAAGCTCCAGACCTATACCAGTCAGGAGTGATTTCAGGATGCCATGTCGCGGATCTCTTTTGCGGCGGTCATTTATTCGTTTTCTGCCATGAGAAGGGAGCGCAGAGAGGT‑ATTAT‑CTTGCCTGACTGAACTGGCGATTaa < 1:479288/251‑1 (MQ=255) acaGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGt < 2:508982/251‑1 (MQ=255) aGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTAc < 2:240237/251‑1 (MQ=255) ccGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTAccc < 2:464167/251‑1 (MQ=255) aagaGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCGCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGt < 2:271869/251‑1 (MQ=255) agagAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATGAGCAGTGAGCGCAGAGAGGG‑AGTAT‑CTTTCCTGACTTAACTGGCGGCTAA‑GTTTCCGCGGACCCGGCGTTTAGtt > 2:423894/1‑251 (MQ=255) agagAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGtt < 1:412536/251‑1 (MQ=255) cGCACTCATAGAAAAATTCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGgat < 2:182439/250‑1 (MQ=255) cGCAATCATAGAAAAATGCGTCATTAGTAATATCTGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGATCCATACCTATAACAGTCAGGATTCATTTCATGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCTTACCCGGCGTTTAGTTATTGCGgat < 2:365250/250‑1 (MQ=255) aGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTTTTCCCTGAGGAGTGGACGCAGAGAGGG‑ATTAT‑CTTTCCTGGCTGAAATGGGGATTAAAGTTTC‑GCGTAACCCGCGTTTTGTTATTTCGgatggataaattt > 1:307719/1‑242 (MQ=255) gAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCCTGAGAAGTGAGCGCAGAGAGGG‑GTTAT‑CTTGCCTTACTGAAATGGCGATTTA‑GGTTTCGCGTCCCCGGGGTTTTGTTATTGGGGATGATG‑ATATTg > 2:421647/1‑250 (MQ=255) aaaaaTGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTTTGCCATGAGAAGTGAGCGCAGGGAGGG‑GTTAT‑CTTGCCTGACTGAACTGGCGGTTAA‑GGTTTCGCGTACCCGGCGTTTAGGTATTGCGGATGATG‑GTAttta > 1:251317/1‑248 (MQ=255) cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTTTTCCATGAGAAGTGAGCGCCGAGAGGG‑GTTAT‑ATTTCCTGACTGAACTGGCGGTTAA‑GGTTTCGCGTCCCCGGCGTTTTGTTTTTGCGGAGGGTG‑ATATTGAAGCTccgc > 2:55790/1‑248 (MQ=255) cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTGCCATGAGAAGGGAGCGCAGAGAGGG‑GTTTT‑CTTTCCCTCCTGGACTGGCGGTTAA‑GTTTCCGCGTACCCCGCGGTTTGTTTTTGCGGATGTTG‑ATTTTGAAGCTCGGc > 1:304826/1‑251 (MQ=255) cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGc < 2:390644/251‑1 (MQ=255) gTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTGATTTTTTTTTTTTTTTCCCTGAGAAGTGAGGGCAGAGGGGG‑GTTAT‑TTTGCCTGGCTGAACTGGGGATTAA‑GGTTCCGCGTAACCGGCGGTTTGGTATTTCGGGGGATG‑ATATTGTAGCTCGGcg > 2:548884/1‑250 (MQ=255) gtagtaTCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGt < 1:133604/251‑1 (MQ=255) ggTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGACATTTTTTCTTTTTTTGCCATTAGAAGGGGGCGCAGAGAGGG‑ATTAT‑CTTTCCTGACTGAACTGGCGATTAA‑GATTTCGCGTACCCCGCGTTTAGTTATTGCGGGTGATG‑ATATTGAAGCTCGGCTGGTTGGTTccttttt > 1:483346/1‑245 (MQ=255) aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACACTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTTTGCCATGAGGAGCGAGGGGAGAGGGGGGATGTT‑CT‑GCCTGACTGAAATGGCGGTTTA‑GCTTCCGCGTACCCGGAGGTTTGCTATTGCGGGTGATG‑ATATTGAAGCTCGGCTGATTGGGTCATTTTCGcc > 1:504074/1‑251 (MQ=255) aGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTCTGCCATGGGAAGTGGGCGCAGAGAGGG‑ATTAT‑CTTGCCTGCCTGGACTGGCGATTAA‑GTTTCCGCGTATCCGGCGTTTTGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACgg > 1:346545/1‑251 (MQ=255) ttGCGGTTAACCCATATAAGCTCCATACCTATTCCAGGCATCAGTCATGTCAGCATGCTATGTGTCGGATCGCGGTTGCGTCTGTCATTTTTTCGTTGTCTGCCATGAGAAGTGAGCTCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTGTCCGCCTACCCGGCGTTTAGTGATTGCGGATGATG‑ATATTGATGCTCGGCTGAGTGGTTCATTGTCGCCTTCTCCGCTGGACGGTGTAtt < 2:524265/250‑1 (MQ=255) cccTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGt < 1:421647/251‑1 (MQ=255) cTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTTTGCCATGAGAAGGGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTTAAGCTCGGCTGATTGGTTTATTGTCGCCATCACCGCTGGGCGGGGTATTTAGTAAAGCGTc > 1:66075/1‑250 (MQ=255) taAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCATTTTTTTTTTTTCTGCCATGAGAAGTGCGCGCCGCGAGGG‑GGTTT‑TTTGCCTGACCGAACTGGGGATTTA‑GTTTCCCCCTACCCCGCGGTTAGTTATTTCCGATGATGGAATTTGAA‑CGCGGCCGGATGGTTCATTTGCGCCATCACCGCTGGTCGgtgtgtttaggaaaacgaccacgc > 2:399735/1‑231 (MQ=255) aaGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTTTGTCCTGAGAAGTGAGCGCAGAGGGGG‑GTTAT‑CTTGCCTGACTGAACTGGCGATTTA‑GTTTTCGCGGCCCCCGCGGTTTGTTTTTTCGGGTGGTG‑GTATTTAAGCCTGGCTGATTGGGTTATTTTTGCCATCACCCCTGGGCgggggttttaggaaaacggccaagct > 2:473657/1‑227 (MQ=255) tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGCCATTTTTTTTTTTTTTTCCATGAGAAAGGGGGGCAGAGAGGG‑GTTAT‑TTTGCCTGACTGAACTGGCGATTTA‑GTTTTCGCGGACACGGCGTTTTGTTATTGTGGGTGGTT‑ATATTTAAGCTCGGCTGATTTGTTTTTTTTTGGCATCACCGCTGGCAGGGGGATTTAGTAAAGCGACAACGCTgg > 2:286261/1‑249 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTTTTCCACGAGAAATGAGGGACGAGAGGG‑ATTTT‑CTTTCCTGTCTGAACTTGCGCTTAA‑GTTTTTGCCTACCCGGCGTTTTGTTATTTCCGGTGATG‑ATATTTTAGCTCGGCTGATTTGTTCCTTTTCGCCATCACACCTTGTCGGGGTCTTTAGTAAAGCGTCCACGCTggcggattttcat > 1:11791/1‑240 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTtca < 1:423894/250‑1 (MQ=255) aCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCAGTTTTTTTTTTTTTGCCATGAGAAGGGAGGGCAGAGGGGG‑GTTAT‑CTTGCCTGACTGAACTGGCGGTTTA‑GTTTTCGCGTACCCGGGGTTTAGTTATTGCGGGTGATG‑ATATTTAAGCTCGGGTGGTTTGGTCATTGTAGCCCTCACCGCTGGGCGGGGTATTAAGTAAAGGGTCAACGCTGGGGATTTTtcatc > 1:629547/1‑250 (MQ=255) aCCAGTCAGGAGTCATTTCAGGAGGACATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCGGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTtcatc < 2:77892/250‑1 (MQ=255) cAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTTTGCCCTGCGGAGGGAGCGCGGAGAGGG‑ATTATTCTT‑CCTGACTTTACTGGCGACTTA‑GTTTCCGCGTACCCGGCGTTTTGTTTTTTCGGGAGATG‑AAATTGAAGGTCGGGTGGTTTGTTTATTTTCGCCATCACCGCCGGGCGGGGTATTTAGTAAAGAGTCAACGCTGGAGACTTTTCCTCAgg > 1:78567/1‑251 (MQ=255) cAGGATTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAAct < 1:151092/251‑1 (MQ=255) cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAAct < 2:392024/251‑1 (MQ=255) gTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCCGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGc < 1:524576/224‑1 (MQ=255) cAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCAtt < 1:609071/251‑1 (MQ=255) cgcgGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGt < 1:161358/251‑1 (MQ=255) ggATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGGAGAGAGCGCAGAGAGGG‑GTTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GGTTCCGCGTACCCGGCGTTTTGTTATTGCGGGTGATG‑ATATTGAAGCTCGGCTGATTTGTTCATTGTCGCCCTCACCGCTGGACGGTGGATTAAGTAAAGCGTCAACGCTGGAGGTTTTTTATCAGGAACTCTTTTTGTCATTAAATGGTGGACGTc > 1:366362/1‑249 (MQ=255) ggcggTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCAATGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGcgaccgaccgac < 1:514389/251‑1 (MQ=255) cggTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATTATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGTCACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTg > 1:301363/1‑251 (MQ=255) cggTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTg > 1:242365/1‑251 (MQ=255) cggTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTg > 2:64169/1‑251 (MQ=255) cATTTGTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCATGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGAAc < 2:201753/250‑1 (MQ=255) aTTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGCTTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGAACa > 1:580678/1‑250 (MQ=255) ttttctGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGAACAATCAGTgg < 2:346545/249‑1 (MQ=255) ctGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGAACAATCAGTGGTACAtt > 2:253797/1‑251 (MQ=255) | AAATAGCGCGCAGGGTGCAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCACTCATAGAAAAATGCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTCTGCCATGAGAAGTGAGCGCAGAGAGGG‑ATTAT‑CTTGCCTGACTGAACTGGCGATTAA‑GTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATG‑ATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCATCACCGCTGGACGGTGTATTAAGTAAAGCGTCAACGCTGGAGATTTTTCATCAGGAACTCTTTTTGTCATTAAATGGTGTACGTCAGGCGACCGACCGACTGAACAATCAGTGGTACATT > NC_000913/4604100‑4604600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |