| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,878,947 | 0 | C | T | 26.9% | 98.2 / 10.1 | 52 | E276K (GAA→AAA) | cas1 | multifunctional nuclease Cas1 |
| Reads supporting (aligned to +/- strand): ref base C (13/25); new base T (14/0); total (27/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.39e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCCGCCAGTCCAGCTATTTGTTCCCAGATCATTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGCACAAACCCAATAGCTGGTGCATAACCAGCTGCAAGTATCGCC > NC_000913/2878699‑2879194 | tcCGCCAGTCCAGCTATTTGTTCCCAGATCATTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTtc < 1:115655/249‑1 (MQ=255) ccAGCTATTTGTTCCCAGATCATTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTTT‑cccgctgcc > 2:4954/1‑243 (MQ=255) ccAGCTATTTGTTCCCAGATCAGTTCACGAATTGTGGCGGATACATCCCCTCCAGATACCCCTGCACGTACCTCCAACAACCAGATGTCTAATCTGCCTCGTAAGCGCGGAGTTACATTTTCAGTGACCACGTCCAACATACTCATTTCAGCTACTACGATGTCCTGCATCTCGCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGTGGTTGTATTTCT‑CCAGCGG‑Caa < 2:455501/251‑1 (MQ=255) tttGTTCCCAGATCATTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGGATTTTT‑CCAGCGG‑CAAACACGTc > 1:104317/1‑251 (MQ=255) tCCCAGATCATTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCctct < 1:204074/250‑1 (MQ=255) cAGATCCTTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATCCTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTTTTTTT‑CCAACGG‑CAAGcccctactctctc > 2:157802/1‑238 (MQ=255) cAGATCATTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATaa < 1:252424/251‑1 (MQ=255) cATTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGGATTTTT‑CCAGCGG‑GCAGAACGTCCTCTATAAGCggg > 1:51074/1‑250 (MQ=255) aaTTTTTGCGGATACATCACATACCTATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCCGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACCGGCTGTGCATCTTCAGGTGGGGCCGGCGGATGTATTTTT‑ACAGCGG‑CACCAAAGTCCACTATAAGCGG‑aaaaacattt > 2:415514/1‑243 (MQ=255) tGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGTACGTCCTCTATAAGCGG‑AATCAATTTGGCTaa < 1:602682/250‑1 (MQ=255) ggATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCCCTTTAAGCGG‑AATCCAttttggtattggt > 2:210056/1‑241 (MQ=255) aTCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTTTTTTT‑CCACCGG‑CAAGCACGACCTCTCTAAGCGG‑AATCAATTTTGCCCATGtttttctt > 2:346832/1‑247 (MQ=255) cgccTACATATGCCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGCCCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGTCCGGCGGTTGTATTTCC‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTtactac < 1:553719/248‑1 (MQ=255) cACCTACATAAACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGT‑AATCAATTTGGCTAATGTTTTactact < 2:136666/251‑1 (MQ=255) aCATATACCCCTGCACGTACCTCCAACATCCAGATTGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCATTGACCACGACCACCATACGCATTTCAGCTACTCCGATGGCCTGCTTCTCCCAGTGAACCAGGAATCGGAATGGCAACAGTCTTTGCTTCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCTG‑CAAGCACGTCCTCTTGAAGCGG‑AACCTATTTGGCTATTTGTTTACTACTGct < 2:539072/249‑2 (MQ=255) taCCCATGCACGTACCTCCAAAAACCAGATGGCTAATCTGCCTCGTACGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGGATTTTT‑CCACCGGGCAA‑CACGTCCTCTATTAGCGG‑GAGCAATTTGGCTTATGTTTTATCACTGCGGAAAat > 2:203378/1‑250 (MQ=255) ccccTGCACGTTCCTCCATCAACCAGATGGCTAATCTGACGCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTGGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCTAAAAATATc < 2:497463/251‑1 (MQ=255) gCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCt < 2:149525/249‑1 (MQ=255) gTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTTTTTCT‑CCACCGG‑CCAGCCCCCTCTCTATAAACGG‑AATCAATTTTGCTAATGTTTTTCTACTGCGaaaaaaaaccccgccccc > 2:556439/1‑238 (MQ=255) ccAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCaaa < 1:481540/249‑1 (MQ=255) caacCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTTTTCCA‑CGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAAATTGGGTCATTTTTTATTTCTGCGGACAATATTCCTGCAACCCAAA‑CGGACt > 1:200657/1‑251 (MQ=255) tAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGGATTTTT‑TCCGCGG‑GAAACACGTCCTCTATAAGCGG‑AATCAATTTTGCTAAAGTTTTTAAACTGCGAAAAATATCCCTGCACGCCCAA‑CGGACTTTCCCGTCCCGCTCCCCAggggt > 1:14848/1‑248 (MQ=255) gcgGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTacg‑acg < 1:395111/251‑1 (MQ=255) ggTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGGATTTCT‑CCAGCGG‑CAAGCACCTCCTCTATAAGCGG‑AATCAATTTGGCTAAAGTTTTTCTTCTGCGAAAAAAATCCCTGCACCCCAAA‑ACGACTTCCCGGGCCGGCCCACCAgggataagccccgct > 1:590071/1‑238 (MQ=255) gTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTg < 1:187332/201‑1 (MQ=255) ttttCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCACCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAAATTGGGTAATGGTTTACTACTACGAAAAAAATCCCTGCACGCCAAA‑CGGACTTCCCCGTCCCGCTCACCAGGGTTacg‑aaccgccatctcc > 1:466709/1‑238 (MQ=255) cAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTTT‑TCAGCGG‑CAAGCACGGCCTCTATAAACGG‑GAACAATTTGGCTAAAGTTTTACTACTGCGGAAAATAACCCCGCACGCCACA‑CGGACTTCCCGGTCCGGCTCACCAGGGGTACG‑ACCCGCTAtccccaaaac > 2:610935/1‑243 (MQ=255) cAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGc < 1:451813/251‑1 (MQ=255) gACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCttt < 1:210056/250‑1 (MQ=255) gACCACGACCAACATACTCATGTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCTGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTc < 2:522363/251‑1 (MQ=255) aCCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGGATTTTT‑CCCGCGG‑CAAGCACCGCCTCTATAAGCGG‑GATCAATTTTGCTAATGGTTTACTACTGCGGAAAAAATCCCTGCCCCCCAAA‑CGGACTTCCCGGTCCGGCCCACCAGGGGTACG‑CCCCGCCCTCTC‑CAAAGCTTTCggggca > 2:284812/1‑246 (MQ=255) ccAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTacaa‑c < 1:37040/251‑1 (MQ=255) attcTCATTTCAGCTACTCCGAAGGCCTGCATCTCCCATTGAAACAGGACGCGTAATGGCAACAGGCTGTGCAGCTTCAGGTGGGGCCGGCTTTTGTATGTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATTTTTTACTACTGCGAAAAATTTCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACTAGGGTTACT‑ACGCGCTATCTC‑AAAAGCTTTCGTTACAA‑CAgtgt < 2:429730/248‑1 (MQ=255) aTACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAgtgt < 1:314737/251‑1 (MQ=255) cATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGATGTATTTCT‑CCCGCGG‑CAAGCACATCCTCTCTAAGCGG‑AATCAATTTTGCTTATGTTTTTCTACTGCGACAAATATCCCTGCCCCCCACA‑AGGGCTTCCCCGTCCGGCTCCCCAAGGGTACG‑ACGCCCTATCCC‑AAAAGCCTTctgtgccacagagccaaa > 2:300277/1‑233 (MQ=255) aTTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAAtt < 1:81578/251‑1 (MQ=255) cAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CCAGCACGTCCTCTATAAGCGG‑AATCAATTTTGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑AGGACTTCCCGGTCCGGCCCACCCGGGGTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAat > 1:196839/1‑251 (MQ=255) tCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTTT‑CCAGCGG‑CCAGCACGTCCCCTATAAGCGGGAAT‑AATTTGGGTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCCGTCCGGCTCACCCGGGGTACG‑ACGCGCTATCTC‑AAAAACTTTCGGGACCA‑CCGGGTCAAATTTTATGATGTCt > 2:467630/1‑251 (MQ=255) ccGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTc < 1:400741/249‑1 (MQ=255) ggCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAat < 2:104317/250‑1 (MQ=255) ccTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTTTAAGCGG‑AATCAATTTTGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CCGACTTCCCGGTCCGGCCCACCAGGGTTACG‑ACACGCTATCTC‑CAAAGCTTTCGGTACAA‑CAGTGTCCAATTTTATGATGTCTGCAATATc > 1:390307/1‑251 (MQ=255) cTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTTTATTTTT‑CCAGCGG‑GCAGCACGGCCTCTATAAACGG‑AAACAATTTGGCTAATGTTTTTCTACCGGGAAAAATATCCCTGCACGCCAAAAGGGCCTTCCCGG‑CCCGCTCCCCAGGGGTACG‑GAGCGCTATCTCCAAAACCTTT‑GGGACAA‑CCGGGGCAAAATTTATGATGTTTGCAAAATCg > 1:277722/1‑251 (MQ=255) gAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGGTGTATTTCT‑CCAGCGG‑AAAGAACGTCCCCTATAAACGG‑AATCAAATTGGCTAATGTTTTACTACTTCGAAAAAAATCCCTTCACGCCAAA‑CGGACTTCCCGGTTCGGGTTACCAGGGGTACGCAC‑CGCTATCTC‑AAAAAGTTTCGGTACAAACGGGGTCAA‑TCTTATGGTGTCTGCAATATAGGAAACAAAGGaa > 2:407250/1‑249 (MQ=255) aaGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGGTGTATTTTT‑CCAGCGG‑CAAGCACGTCCTCTTTAAGAGG‑AATCAATTTGGCTAATGTTTTTTTACTGCGGAAAAAATCCCTGCACGCCCAA‑CGGACTTCCCGGTCCGGCTCACCCGGGGTACG‑ACGCGCTATCTC‑AAAAGCTTTCTGTACAA‑CAGTGTCAAATTTAATTATGTCTGCAATATCGTAAACAAAAGAAAAAGGcgttt > 2:122285/1‑247 (MQ=255) aGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGGATTTCT‑TCAGCGG‑CCAACACGTCCTCTTTAAGAGG‑GATCAAATTGGCTAATGTTTTAATACTTCGAAAAAAATACCTGCCCGCCAAA‑CGGACTTTCCGGGCCGGCTCACCAGGGGTACG‑AACCGCTATCTC‑AAAAACCTTCGGGACAA‑CAATGGCAAAATTAAAGATGTCTGCAATATCGTAAACAAAAGAAAGAGGCTTTcc > 1:554596/1‑251 (MQ=255) ggCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGc < 1:317692/250‑1 (MQ=255) aGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCt < 2:639538/233‑1 (MQ=255) aGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAACGG‑CCAGCAAGGCCGCCTTAAGCGG‑AATCAATTTTGCTAATGTTTTAATAATGCGAAAAATATTCCTCCACGCCAAA‑CCGACTTCCCGGTCCGGGTCAACCGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGAGGCAAAATTAAAGATGGCTGCAAAATCGTAAACAAAAGAAAGAgggtagatcggaagagcaaacc > 1:639538/1‑231 (MQ=255) ggCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGCACAAACCCAATAGCTGGTGCATAAcc > 1:146544/1‑249 (MQ=255) cggcggTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGCACAAACCCAATAGCTGGTGCATAACCAGCTg < 1:203378/251‑1 (MQ=255) cggTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGCACAAACCCAATAGCTGGTGCATAACCAGCTGCa > 2:552211/1‑250 (MQ=255) gTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTAATGCGAAAAATATCCCTGCACGCCAAA‑CGGCCTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGCACAAACCCAATAGCTGGAGCATAACCAGCTGCAAgg > 2:498026/1‑250 (MQ=255) gTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGCACAAACCCAATAGCTGGTGCATAACCAGCTGCAAGTATc < 1:4954/251‑1 (MQ=255) tcct‑cCAGCGG‑CTAGCACGTCCTCTATAAACGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGCACAAACCCAATAGCTGGTGCATAACCAGCTGCAAGTATcgct < 2:394128/248‑2 (MQ=255) | TCCGCCAGTCCAGCTATTTGTTCCCAGATCATTTCACGAATTTTTGCGGATACATCACCTACATATACCCCTGCACGTACCTCCAACAACCAGATGGCTAATCTGCCTCGTAAGCGCGGAGGTACATTTTCAGTGACCACGACCAACATACTCATTTCAGCTACTCCGATGGCCTGCATCTCCCAGTGAAACAGGAAGCGGAATGGCAACAGGCTGTGCATCTTCAGGTGGGGCCGGCGGTTGTATTTCT‑CCAGCGG‑CAAGCACGTCCTCTATAAGCGG‑AATCAATTTGGCTAATGTTTTACTACTGCGAAAAATATCCCTGCACGCCAAA‑CGGACTTCCCGGTCCGGCTCACCAGGGTTACG‑ACGCGCTATCTC‑AAAAGCTTTCGGTACAA‑CAGTGTCAAATTTAATGATGTCTGCAATATCGTAAACAAAGGAAAGAGGCTTTCCTGTATGCACAAACCCAATAGCTGGTGCATAACCAGCTGCAAGTATCGCC > NC_000913/2878699‑2879194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |