| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,822,172 | 0 | C | T | 27.6% | 112.4 / 18.5 | 58 | D29N (GAC→AAC) | osmE | osmotically‑inducible lipoprotein OsmE |
| Reads supporting (aligned to +/- strand): ref base C (30/12); new base T (0/16); total (30/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.80e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTGTCGTTTCAGTAGCAAC > NC_000913/1821924‑1822411 | cGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCtt < 1:73696/251‑1 (MQ=255) cAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCtttt > 2:225467/1‑250 (MQ=255) gtgGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑Ac < 2:578267/249‑1 (MQ=255) aTCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCAt > 2:641529/1‑251 (MQ=255) cAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATa < 2:318457/250‑1 (MQ=255) gTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTAc > 1:313087/1‑251 (MQ=255) tATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTAc > 1:538165/1‑250 (MQ=255) tATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTAc > 2:559387/1‑250 (MQ=255) aTTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACaa < 1:219601/251‑1 (MQ=255) cAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATCAGCCGTACAAccc > 2:266367/1‑251 (MQ=255) gggTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTCCCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCACCC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACGGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGc < 1:160922/250‑1 (MQ=255) gTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTCCCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTCCAACCCGCCAGCAt < 2:585045/251‑1 (MQ=255) cTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATgg > 1:426553/1‑251 (MQ=255) cTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATgg > 1:143285/1‑251 (MQ=255) tGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGt > 2:208786/1‑251 (MQ=255) aaCCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTGGACCCAGGAGGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCGCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAt < 2:480994/251‑1 (MQ=255) atgaCATGTACGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑ACTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGc > 2:617884/1‑251 (MQ=255) tGTCGGGTATCATTTAACGCGCAAAAGTGGGTTTCTGCTTTACCACCACGTGGACCCGGGATGTAGGTCGGGCAAGAACCGCAGGCTGGGATCATGCGCACTTCAGACGAAGTTTTACCCGCAATTTG‑G‑GAACCC‑GGCCCCCGGCTAATG‑CCTTTTTGGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑CCGATCATAAGCCGTACACCCCGCCAGCATGTTTAAT‑ACCGCCGCTGCACTc < 2:576008/249‑1 (MQ=255) tCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGa > 2:432948/1‑250 (MQ=255) gTATCATCTAACGCGACAAAGTAGGTTGCTGCTTTCCCAGCACGTTGCCCCAGGATGTAGGTCGGGCAAGTACCGCGACCATGGATCATGCTCACTTCAGAGGAGGGTTTACCCGAAATTGG‑G‑CCAACC‑GGCGCCCGGCTCGTG‑CCTTTTTTGACGTTTTGC‑ACCACGGGCTGGACAACCTGGTTTTTGG‑T‑ATGATCATAAGCCGTACAACCCGCCAGCATTGTTAAT‑ACCGCCGCTGCACTCAGAATTcc < 1:161062/251‑1 (MQ=255) tATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCt > 2:345735/1‑251 (MQ=255) catcTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGcc > 1:573253/1‑251 (MQ=255) atcTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTAGCAAGTCCCGCGAGCATGAATCGTGCTCACTGCAGACGAGGGTTTGCCCGCAATTTG‑T‑GCAGCC‑TGCGCCCGGCTCATG‑CCTTTTTTGCCGTCTTAC‑CCCACGGTCTGTACAAACGGTTCTTTGG‑T‑ACAATCATAAGCCGTACAACCCGCCAGCAGGGTTAAT‑GCCGCCGCTGCACTCAGAATTCCTGcc < 1:4418/250‑1 (MQ=255) aaaCGCGACAAAGTAGTTTTCTTCTTTACCAACACGTTCACCCAGGATGTGGGTCGGGCAAGTCCCGCGAGCATGGTTCATGCTCACTTCAGACGAAGGTTTCCCCGCAATTTG‑T‑GCACCC‑TCCGCCCGGCTCATC‑CTTTTTTTGACGTCTTTC‑CCCACAGGCTGTACAACCTGTTTTTTGT‑T‑ACAATCAAAAGCCGTACAACCCGCCAGCAGGTTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCatat < 2:621048/250‑1 (MQ=255) aaaaGTAGGTTTCGGCTTTACCACCACGTTGCCCCAGGATTAAGGGCTGCAAAGTACCGCGAGCATGGATCATCCTCCCTTCAGACGAAGGTTTCCCCCCAATTT‑‑T‑GCAACCCGGCGCCCGGCTCATG‑CTTTTTTTGTCGTCTTTC‑ACCACGGGCTGTACAAACGGGTCTTTGG‑T‑ACGACCATAAGCCTTACAACCCGCCACCAGGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTc < 1:423544/250‑1 (MQ=255) gTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCg > 2:168170/1‑251 (MQ=255) tttCTGTTTTCCCATCCCGTTGCCCCAGGATGTAGGTCTGGCAAGTACCGCGAGAATGGATCATGCTCACTTCAGACGAGGGTTTCCCCGCAATTTG‑T‑GCACCC‑TGCGCCCGGCTCATG‑CTTTTTTGGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACACCCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCg < 1:345735/250‑1 (MQ=255) gCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCctct > 1:490329/1‑251 (MQ=255) gCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCctct > 2:139012/1‑251 (MQ=255) ttACCATCACGGTGACCCAGGATGTACGTCTGGCAAGTACCGCGAACATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGCCGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTCCAACCCGCCAGCATGGTTACT‑ACCGCCGCTGCACTCAGAATTCCTACCATATTCTTGTTCATATTCCGTCATCTTGt > 2:580284/1‑251 (MQ=255) gttgccccaggtggatggTCTGGCAAGTACCCCGAGAATTCTTCATGCTCCCTTCATACGAAGGTTTCCCCGCA‑TTTG‑TTACAACC‑TGCCCCCGGC‑CATGGTCTTTTGTTACGTTTTTC‑ACCACAGGTTGTACAACTTGTTTTTTGG‑T‑CCGATAATAAGCCGTACACCCCGCCAGCATTGTTAAT‑CCCGCCGCTGCACTCATAATTCCTGCCATATTCTTGTTCATATTCCGGCCTCGTGTTTATCAGCgt < 2:338016/235‑1 (MQ=255) gTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCatat > 1:363895/1‑228 (MQ=255) gaagttcgggCAGGTACCGCGAGCATGGTTCATGCTCACTTAATCCGAAGTTTTACCCGCATTTTG‑T‑TCACCC‑TGCGCCGGGCTTTTG‑CTTTTTTTAACGTCTTTC‑ACCACAGGCTGTACAAACTGGTTTTTGG‑T‑ACGATAATAAGCCGTACACCCCGCCAGCATGTTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCt < 1:270647/243‑1 (MQ=255) aGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTgg > 2:80409/1‑251 (MQ=255) cgcgGGCATGGACCATGCTCCCTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCACCC‑TGCCCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTTTTTGG‑T‑ACGATAATAAGCCGTACACCCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCt < 1:309696/251‑1 (MQ=255) gagaagggatcatgccccctcaaGACGAAGGTTTACCCGCAATTGG‑T‑GCACCC‑TGCGCCCGGCTAATG‑CCTTTTTTGACGTTTTTC‑ACCACGGGCTGTAAAACCGGGTTTTTGT‑T‑ACAATCATAAGCCGTACACCCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCtttt < 1:169913/229‑1 (MQ=255) gAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCtttt > 1:550191/1‑251 (MQ=255) ggATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGc > 2:638139/1‑251 (MQ=255) cccACTTCAGACGAAGGTTT‑CCCCCAATTTGGT‑GAACCC‑GGCGCCCGGCTAATG‑CCTTTTTTGCCTTCTTTC‑CCCACGGGCGGTAAAAACGGGTTTTTGG‑T‑ACGATCATAGGCCGTACACCCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAAc < 1:173541/249‑1 (MQ=255) tCACTTCAGACGAAGGTTTCCCCGCAATTTG‑T‑GAAACC‑TGCGCCCGGTTCATG‑CCTTTTTTG‑CCTCTTTCCACCACAGGCTGTACAACCTGGTTTTTGT‑T‑ACGATCAAAAGCCGTACACCCCGCCAGCATGGTTAAT‑CCCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGaa < 1:391839/249‑1 (MQ=255) tCAGAGGAGGGTTTCCCCGCAATTTG‑T‑GCACCC‑TGCGCCCGCCCCTTG‑CCTTTTTGCACGTTTTCC‑ACCACGGCCTGTA‑AAACCGGTTTTTGGGT‑CCGATAAAACCCCGAACACCCCCCAAGCATGTTTAAT‑CCCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAAc < 2:313087/250‑1 (MQ=255) gAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCg > 1:238260/1‑251 (MQ=255) aGGTTTACCCGCAATTTG‑T‑GCACCC‑GGCCCCCGCCTAATG‑CCTTTTTTGACGTTTTTC‑CCCACAGCCTGTACAACCTGGTTTTTGG‑T‑ACGATCAAAAGCCGTCCACCCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCt < 1:559387/251‑1 (MQ=255) ccccGCAATTTT‑G‑GCACCC‑TGCGCCCGGCTAATG‑CTTTTTTTGCCTTTTTTC‑CCCACAGGTTGTACAACCTGGTTTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCag < 1:208786/249‑1 (MQ=255) cGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCCTATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAggc > 2:38172/1‑250 (MQ=255) aaTTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTc > 1:535495/1‑251 (MQ=255) ttG‑T‑GCACCC‑GGCGCCCGGCTCATG‑CTTTTTTTGACGTCTTCC‑ACCACAGGCTGTACAAAC‑GGTTTTTGG‑TTACGATAAAAAGCCGTACACCCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCt < 1:432948/250‑1 (MQ=255) gcgcCCGGCTCAGG‑CCTTTTTTGACGTCTTCC‑CCCCCAGGCTGTACAAACGGGTTTTGGG‑T‑ACGATCATAAGCCTTACACCCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGtttt < 1:168170/251‑1 (MQ=255) gcgcCCGGCTAATG‑CTTTTTTTGACGTCTTCC‑ACCCCAGGCTGTACAAACTGGTTTTTGT‑T‑ACGATAATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGtt < 1:122484/249‑1 (MQ=255) cccGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAac > 1:108766/1‑251 (MQ=255) aCGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGTCGCTTTTTCAAGCCCGTGAACGAAACGGCACCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCg > 2:616374/1‑251 (MQ=255) ttcccccacAGGCTTAAAAAACGGGTTTTTGG‑T‑ACAATCAAAACCCTTAAACCCCCCCAGCATGTTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTg < 1:38172/245‑1 (MQ=255) ttC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTGTc > 2:640483/1‑251 (MQ=255) cctcttccccaatctaaatcTGGTTTTTGT‑T‑ACTATCAAAAGCCGTACACCCCGCCAG‑ATTGTTAATTACCGCCGCTGCACTCAGAATCCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTGTCg < 2:339122/232‑1 (MQ=255) caGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTg > 1:71606/1‑235 (MQ=255) tGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATACGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTGTCGTTTCAGTAGc > 1:413209/1‑250 (MQ=255) aaaaaCGGGTCTTTGG‑T‑ACGATCATAAGCCGTACACCCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTGTCGTTTCAGTAGCAAc < 1:139012/248‑1 (MQ=255) cAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTGTCg > 1:339122/1‑236 (MQ=255) | CGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCGCAATTTG‑T‑GCAACC‑TGCGCCCGGCTCATG‑CCTTTTTTGACGTCTTTC‑ACCACAGGCTGTACAAACTGGTCTTTGG‑T‑ACGATCATAAGCCGTACAACCCGCCAGCATGGTTAAT‑ACCGCCGCTGCACTCAGAATTCCTGCCATATTCTTGTTCATATTCCGTCCTCTTGTTTATCAGCGTGTTAGATAAGCCTGGAATACATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTGTCGTTTCAGTAGCAAC > NC_000913/1821924‑1822411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |