| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,435,718 | 0 | G | A | 30.0% | 93.6 / 16.1 | 51 | intergenic (‑99/+42) | uspF/ompN | universal stress protein F/outer membrane porin N |
| Reads supporting (aligned to +/- strand): ref base G (34/1); new base A (0/15); total (34/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.11e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGAGAGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGCACCA > NC_000913/1435471‑1435961 | agagagGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAAt > 2:634323/1‑251 (MQ=255) gtagGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGaaaa > 2:270904/1‑250 (MQ=255) ggCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGccc > 1:429326/1‑251 (MQ=255) aGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGcc > 1:7170/1‑251 (MQ=255) gAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCAt > 2:122997/1‑250 (MQ=255) ggTATTAACGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGCCAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTCACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAACGGAGGAAGAATAAGCAGAAAAAGCCCACCATAAc > 2:306029/1‑250 (MQ=255) ttACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCgg > 1:273286/1‑251 (MQ=255) aCCGTCAGGAAATGACCCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAACCACGCGTTGATTTAATTCTAAACCGAAAATATCGATAGGGACAAGAATCGTTCTGTTCAAAAAACC‑TCCTGTTTT‑AGTATCCGCAAAAAGTGAAACGCCAGATGCCACTTTTTG‑TGTAATGA‑GGG‑AGTTCACATTTTTAATTTAGATTAAGGGAGGAAAAATAAGCAAAAAAAGCCCGCCATAACAGCGGGc < 1:146705/251‑1 (MQ=255) cGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGc > 2:399883/1‑249 (MQ=255) tGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGCTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGAATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCAGCCATAACAGCGGGCAGGAGGATTTAGacatgat > 2:274155/1‑244 (MQ=255) catcatCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGAt > 2:199251/1‑248 (MQ=255) caacaccattCTTTGCCTCTTCCTCAGCGTGGATAATCACGCGTGGATTTAATACGAAATCGAAAATATGGATGGGAACAACACTTTTTCTGTTCA‑AAACCC‑CCCTTTTTTTGGTTCCCGAATAAATTTTAACGCAAGATCACATTTTTTT‑TGTAAGGC‑CGG‑TGTTCACATTTTTAATTTAAAAAAAAGGAGAAAAAATAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGAt < 1:199251/239‑1 (MQ=255) catcaATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAcc > 2:592964/1‑250 (MQ=255) aaatttttccctctcccccagcGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGAAAAGAATCGTTCTGTTCATAAAACC‑TCCTTTTTT‑ATTACCCGCAAAAAGTGTAACCCCAGATGACTTTTTTTG‑TGTAATGC‑CGG‑AGTTCAAATTTTTAATTTAGATAAAGGGAGGAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGAc < 1:399883/230‑1 (MQ=255) tttttcccttttCCTCAACGTGGCTAATCCCTCTTTGATTTAATTCTAAATCGAAAATATCGATAGGGACAAGAATCTTTTTGTT‑AAAAAACC‑CCCTTTTTTTAGTCTCCGAAAAAAGTGAACCGCCAGATGACCCTTTTTG‑TGTAAGGA‑GGG‑AGTTCACATTTTAATTTTAGAAAAAAGGAGGAAAAATAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCt < 1:159980/240‑1 (MQ=255) gCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAAAC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCg > 2:450560/1‑251 (MQ=255) cccttttCCTCAACGTTTCTAACCACGCGTAGATTTAATTCTGAATCGAAAATATCGATAGGGAAAAAAATCTTTCTGTTCAAAACCCC‑TCCTTTTTT‑AGTTCCCGAATAAAGTGTAACCCCAAATAACTTTTTTTG‑TGTAATGA‑CGT‑AGTTCACTTTTTTATTTAAGAACAAAGGAGAAAAAAAAAGAAAAAAAACCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCg < 2:267711/246‑1 (MQ=255) tctccctaaacggggatAATCCCGCGTTGAGTTAATTCAGAAGCGAAAATATGGAGAGGAAAAAAAATCGTT‑TTTTAAAAAAACCCTCCTTTTTT‑ATTACCCAAAAAAAGTAAAACGCAAGATGACTTTTTTGG‑TGTAAGGA‑CGG‑AGTTCACTTTTTTATTTAAAATAAAGGGAGAAAAAAAAAGAAAAAAACGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCa < 2:216336/221‑1 (MQ=255) tctTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCa > 1:216336/1‑237 (MQ=255) gCTAATCACGCGTTGAGTTAATTCTGAATCGGAACTATCGATAGGGACAAGAATCGATCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGCCACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCAGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACGAGACCTAAAGAGACAATATCATCgga > 1:226984/1‑247 (MQ=255) tCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGc > 2:420495/1‑251 (MQ=255) ttGAGTTAATTCTGAATCGAAAATATCGATAGGGAAAAGAATCTTTCTGTTAAAAAACCC‑TCTTGTTTT‑AGTCCCCGCATAAGGTGTACCGCCAGATGACTTTTTTTG‑TGTAATGA‑CGG‑GTTTCACATTTTAAATTTAAAACAAAGGAGAAAAAATAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTgg < 1:634323/250‑1 (MQ=255) ggAGTTATTTGTGAAGCGGAAATATAGAAAGGGAAAAGAATTGTTTTGTTAAAAAACCC‑CCCTGTTTT‑AGTACCCGCAAAAAGTATAACGCAAGATGCCGTTTTTTT‑TGAAATGA‑GGG‑ATTTCAATTTTTTAATTTAGATAAAAGGAGAAAAAATAAGAAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCa < 1:270904/250‑1 (MQ=255) ttAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGt > 2:307457/1‑251 (MQ=255) ggACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGCGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGt > 1:111157/1‑251 (MQ=255) aCAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTg > 2:30743/1‑251 (MQ=255) aTCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGAtttt > 2:82933/1‑250 (MQ=255) gTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTtat > 2:87194/1‑249 (MQ=255) t‑AGTATCCGCAAAAAGTTAAACGCAAGAGGACCTTTTTTG‑TGTAAGGA‑CGG‑AGTTAACATTTTAAATTTAGATAAAGGGAGAAAAAAAAAGAAAAAAAGGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTa < 1:315704/250‑1 (MQ=255) aGTATCCGCATAAAGTGTAACGCCAGATGACCCTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCGGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAGGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCaaggaaggggaccaggtttttatt > 2:45706/1‑229 (MQ=255) gTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTg > 2:245821/1‑251 (MQ=255) atccacaaaaattgtACCGCAAGATGACACTTTTGG‑GGTAATGA‑CGG‑ATTACACATTTTAAATTAAGAGAAAGGGAGAAAAAATAAGCAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGaa < 1:133943/239‑1 (MQ=255) ccgaaaaaaGTGAAACCCCAGATGATTTTTTTGG‑TGTAAGGA‑GGG‑ATTTCACTTTTTTATTTAAAAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAAt < 1:71711/245‑1 (MQ=255) cGCAAAAAGTGAAACGCAAGAGGACTCTTTTTG‑TGTAATGA‑CGG‑ATTTCACATTTTTATTTTAGATCAAAGGAGGAAAAAAAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATa < 1:592964/251‑1 (MQ=255) aaaaaGTGTAACGCAAGAT‑AAATTTTTTGGTGTAA‑GA‑CGGGAGTTCACTTTTTTAATTAAGAAAAAAGGAGAAAAAAAAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTa < 2:141385/249‑1 (MQ=255) aaGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAAAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGt > 2:629057/1‑251 (MQ=255) aGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTc > 1:96207/1‑251 (MQ=255) tAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCgcgc > 2:302126/1‑251 (MQ=255) accgctggatgcacttttttG‑TGTAATGAGTGG‑A‑TTCACTTTTTTAATGTAAAAAAAAGGAGGAAAAATAAGCAAAAAAGGTCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGcc < 1:45706/236‑1 (MQ=255) gCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAat > 1:367138/1‑251 (MQ=255) actttttttG‑TGAAATGA‑GGG‑AGTTCACTTTTTAAATTAAAAAAAAAGGAGAAAGAAAAAAAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGt < 1:420495/247‑1 (MQ=255) acTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAt > 1:642286/1‑251 (MQ=255) ttttG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTAttt > 2:264946/1‑250 (MQ=255) gA‑CGG‑AGTTCATTTTTTTAATTAAAACAAAAGGAAGAAAAAGAAGAAAAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTCTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCttt < 1:74747/251‑1 (MQ=255) cGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGAACTAAAGCGACAATATCATCGGTAGAGATGCAATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTAAACGTAGGAGGACATGTTTTTATTGAAATAGTAAGTCGCGCAAATAACGGCGTATTTAAACAGATCTTTat > 1:573715/1‑251 (MQ=255) gg‑AGTTCACATTTTTAATTTAGATCAAAGGAGGACGAATAAGCAGAAAAAGCCCGACATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGACATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGAGGACATGTTTTTATTGACATAGTAAGTCGCACCAATATCGGCGTATTTAACCAGGTCTTTatc > 2:586528/1‑251 (MQ=255) ttCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTatcatc > 2:222371/1‑250 (MQ=255) agcgtttttAATTTTGAGCAAGTGGGGAATAATAAGTAGAAAACGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGGCCTAGAGCGACAATATCAACGGTAGAGATGCTATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGTTTGATTTTATAGTCAACGTAGTTGGACATGTTTGTATTGGAATAGTAAGTCGCTCCATTATCCGCGTATTTGACCAGATCTTTATCTTCaa < 2:540824/246‑1 (MQ=255) aaTTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCgg > 1:243648/1‑251 (MQ=255) aaGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGcac > 1:456552/1‑251 (MQ=255) ggaggaAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGcaccc > 1:287603/1‑250 (MQ=255) | AGAGAGGCATAGTAGGGCAGTGAAGGTATTACCGTCAGGAAATGAACCTCTGCATCATCAATCTTTGCCTCTTCCTCAACGTGGCTAATCACGCGTTGAGTTAATTCTGAATCGGAAATATCGATAGGGACAAGAATCGTTCTGTTCATAAAACC‑TCCTGTTTT‑AGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTG‑TGTAATGA‑CGG‑AGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTAGAGATGCCATTGGCAGCGTAGAAGCTGTCATCTTCATCCAACAGGTTGATTTTATAGTCAACGTAGGTGGACATGTTTTTATTGAAATAGTAAGTCGCGCCAATATCGGCGTATTTAACCAGATCTTTATCATCAACACCTGCCGGGTTGTCTGCACCA > NC_000913/1435471‑1435961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |