Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,395,4390AC20.0% 182.5 / 11.2 75V153G (GTT→GGT) nuoJNADH:quinone oxidoreductase subunit J
Reads supporting (aligned to +/- strand):  ref base A (39/21);  new base C (0/15);  total (39/36)
Fisher's exact test for biased strand distribution p-value = 2.44e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GTAGCTTCCGGCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCA  >  NC_000913/2395190‑2395679
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                 
gTAGCTTCCGGCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAAc                                                                                                                                                                                                                                                  >  1:250058/1‑251 (MQ=255)
      tCCGGCGACCACGAAGGCCAGCGCGGAGGCGTTTATCATGATTTCCAGGCCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAATGCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCGCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCTCCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGag                                                                                                                                                                                                                                             <  2:30510/250‑2 (MQ=255)
       ccGGCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCt                                                                                                                                                                                                                                           <  1:484681/251‑1 (MQ=255)
         ggCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGc                                                                                                                                                                                                                                         <  2:279384/251‑1 (MQ=255)
         ggCGACAACGAAGACTAGAGCGGAGGCGGTAATCATGATTTCCAGCACAATCAACATAAACAGCAGATTGCGTCGGATAACCAGACCGGTTCAGCCAAGAACGAATAAGATTGCCGCGAGGCTCAGTCCATGTGGTAAGGGGATCATGCGTGCTCATCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGc                                                                                                                                                                                                                                         <  2:296201/251‑1 (MQ=255)
                   gaggccatagcgGAGGCGTTAACCATCATTTCCAGACCAATCAACAATAACGGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCCTTTCGCGCTTGCGTCTTTACGATTGCTCAGCGCTGCGCCCGCACGCTCTTCACTACCGACGTGGAAGGCCACACCCAGGCTTGCGagcagcagc                                                                                                                                                                                                                              <  2:300323/242‑1 (MQ=255)
                       ccAGCGCGGAGGCGTTAATCATGATTGCCAGACCAAGCAACATAAACAGCAGATTGCGACTGATAACCAGACCGGTTAAGCCAAGAACGAATAAGAATGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCGGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAg                                                                                                                                                                                                                          <  1:158890/251‑1 (MQ=255)
                        cAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGa                                                                                                                                                                                                                         <  2:164654/251‑1 (MQ=255)
                               gAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGt                                                                                                                                                                                                                  <  1:339445/251‑1 (MQ=255)
                                aGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCTCTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGtt                                                                                                                                                                                                                 <  1:85189/251‑1 (MQ=255)
                                aGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGtt                                                                                                                                                                                                                 <  1:28420/251‑1 (MQ=255)
                                 ggCGTTAATCATGCTTTCCAGACCACTCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTc                                                                                                                                                                                                                >  1:154544/1‑251 (MQ=255)
                                        aTCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGcc                                                                                                                                                                                                         >  1:364765/1‑251 (MQ=255)
                                                     gACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCCCGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGcc                                                                                                                                                                                            >  2:10720/1‑251 (MQ=255)
                                                     gACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGcc                                                                                                                                                                                            >  1:157910/1‑251 (MQ=255)
                                                         caTCAACATAATCAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCAGGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCGTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGAACTGCGCGCAGCAGCATAGAAGCCCGTTCCACCGCCAGTACGTAAGGCCCGa                                                                                                                                                                                         >  2:40516/2‑250 (MQ=255)
                                                          aTCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCCAGAACGAATAAGATTGCCGCGAGGATCAGTCCCTGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCAAGTTCCACCGCCAGTACGTCAGGCCCGAAc                                                                                                                                                                                       >  2:168684/1‑251 (MQ=255)
                                                                  aaaCAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAAt                                                                                                                                                                               >  1:157378/1‑251 (MQ=255)
                                                                  aaaCAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATGGCTCAGCACTCCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAAt                                                                                                                                                                               <  1:151964/251‑1 (MQ=255)
                                                                    ccagcagATTGCAACGAATAACCAGCCCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCATTCCATGTTGTAAGGGGATCATGCGTGCCCCTCCGTTTTTCTTTTCGCGCTGTCGTTTTTACGATTGCTCAGCACTCCACCCGCCCGCTCTCCACGCCCGAGGTGGAAGGCCACACCCAGCCCTGCGAGCAGCAGCATAGAAGCCATTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATAc                                                                                                                                                                             <  1:39285/250‑1 (MQ=255)
                                                                          gATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTCAGGCCCGAACAGCGTAATAccccatg                                                                                                                                                                       >  2:105867/1‑247 (MQ=255)
                                                                                 ccGGATAACCAGCCCGTTTAACCCAAGAACAAATAAGTTTGCCGCGAGGATCAGTCCATTTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCTTCTTTACTATTGCTCAGCACTTCCCCCGCCCGCTCTTCACGCCCGACGTGGAAGGCCACAACCAGCCCTGCGAGCAGCAGCATAGAAGCCATTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGc                                                                                                                                                                <  1:199222/250‑1 (MQ=255)
                                                                                   gggtAACCAGGCCGGTAAAGCCAGGAACGAATAAGATGGCCGGGAGGATCATTCCATGTTTTAGGGGGACCAGGCGTGCTCCTCCGTTTTTCTTTCCGCGCTGTGTTCTTTACGATTGCCCAGCCCTACCCCCGCACCCCCTTCACGACCGGCGTGAAAGCCCACAACCAGCCCTGCGGGCAGCAGCAAAGAAGCCAGTTCCGCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCAc                                                                                                                                                              <  1:78084/248‑1 (MQ=255)
                                                                                     aTAACAAGCCCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGCCCATTTTGTAAGGGGATCATGCGTGCTCCCCCGTTTTTCTTTTCGCGCTTTCGTCTTTACGATTGCTCAGCACTTCCCCCGCCCGCTCTTCACGCCCGACGGGGAAGGCCAAACCCAGCCCTGCGAGCAGCAGCATAGAAGCCATTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTg                                                                                                                                                            <  1:259579/251‑1 (MQ=255)
                                                                                          cAGACCGGTTAAGCCACGAACGAATAAGATTGCCGCGCGGATCAGTCCATGTTATAAGGGGATCATGCGTGCTGCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACATGGGAGGCCACAACCAGACCAGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCATTACGCAAGGCCCGAACAGCGTAATAACCACTGCTTTAGCACTGAtt                                                                                                                                                         >  2:419279/1‑249 (MQ=255)
                                                                                            gACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCAACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGAACTGATTGGCg                                                                                                                                                     >  2:333471/1‑251 (MQ=255)
                                                                                              cgggtaaaGCCAAGACCAAATAAGTTGGCCGCGAGGATCATTCCATGTTGTGAGGGATTCATGCGTGCCCCTCCTTTTTTCTTTTCGCGCTGTCTTCTTTCCAATTGCACACCCCTCCCCCCCCCCCCTCTCCACGACCGACGTGGAAGGCCACACCAAGCCCTGCGAGCAGCACCAAAGAAGCCATTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTa                                                                                                                                                   <  2:364765/245‑1 (MQ=255)
                                                                                              ccGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGt                                                                                                                                                    >  2:51929/1‑250 (MQ=255)
                                                                                                ggTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTAcc                                                                                                                                                 >  1:40375/1‑251 (MQ=255)
                                                                                                 gTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACACCCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCg                                                                                                                                                <  1:6425/251‑1 (MQ=255)
                                                                                                 gTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCg                                                                                                                                                >  1:390391/1‑251 (MQ=255)
                                                                                                        caataaCGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATAc                                                                                                                                         >  2:503352/5‑251 (MQ=255)
                                                                                                          aGAACGAATAAGATTGCCGCGGGTATCAGTCCTTGTTTTAGGGGGATCATGCGTGCCCCCCCGTTTTTCTTTCCGCGCTGTCGTCTTTACGATTCCTCAGCACTTCCCCCGCCCGCTCTTCACGACCGACGTGGAAGCCCACAACCAGACCTGCGAGCAGCAGCAGAGAAGCCAGTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATAccc                                                                                                                                       <  1:167112/251‑1 (MQ=255)
                                                                                                           gAACGAATAAGTTTGCCGCGAGGACCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCCCCTTTTTTCTTTTCGCGCTGTCTTTTTTACGATTGCTCAGCACTCCCCCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGCCCTGCGGGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCt                                                                                                                                      <  1:328073/251‑1 (MQ=255)
                                                                                                           aaaCGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGTTCATGCGTGCCCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTCCACCCGCCCGCTCTTCACGACCGACGTGGAAGGCCACACCCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCt                                                                                                                                      <  1:364853/250‑1 (MQ=255)
                                                                                                                aagaaGAGTGCCGCGAGGAGCAGTCCATGTTGAAGGGGCATCAGGCGTGCTCCTCCTTTTTTTTTTCCGCGCTGTCGTCTTTACGATTGCCCATCCCTCCCCCCCCCCGCTCTCCACGCCCGAGGGGGAGGCCCAAAACCAGACCTGCGAGCACCACCAAAAAAGCCATTCCCTCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCGTTAGCACTGATTGGCGTACCGTCGATACCCTGAt                                                                                                                                   <  2:157378/246‑1 (MQ=255)
                                                                                                                   agtctgcccacgAGTATCCGTCCATGTGTCAAGGGGAGCATGCTGCCTCCTCCTTTTTTTTTGTCGCGCTTCCTTCTTTACGATTGCCCAGCACTTCCCCCGCCCGCTCTCCCAGACCGACGTGTAAGGCCACACCAAGACTTGCGACCCGCAGCAAATACTCCAGTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCTCTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTa                                                                                                                              <  2:123392/241‑1 (MQ=255)
                                                                                                                        ggCCGCGAGGATCAGTCCATGTTGGAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCCCAGCCCTCCCCCCCCACGCTCTTCACGACCGACGTGGAAGCCCACAACCAGACCGGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACAcc                                                                                                                         <  1:4281/250‑1 (MQ=255)
                                                                                                                         gCCGCGAGGATCAGTCCATGTTGTAAGGGAATCAGGCGTGCTCCTCTGTTTTTCTTTTCGCGCTGTCTTCTTTACGATTGCCCAGCACTCCCCCCGCACGCTCTTCACGCCCGACGTGGAGGGCCACACCCAGCCCTGCGAGCAGCAGCATAGAAGCCGGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACAcc                                                                                                                         <  1:28997/250‑1 (MQ=255)
                                                                                                                          ccGCGAGGATCAGTCCATGTGGTAGGGGGATCGTGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCCCACCACTCCCCCCGCCCGCTCTTCACGACCGCCGGGGAAGGCCACACCAAGACCTGGGAGCAGCATCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGa                                                                                                                       <  1:211121/251‑1 (MQ=255)
                                                                                                                             cgAGGATCAGTCCCTGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAgg                                                                                                                     >  2:261193/1‑250 (MQ=255)
                                                                                                                              gAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGAt                                                                                                                   >  2:197366/1‑251 (MQ=255)
                                                                                                                               cggagcAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATg                                                                                                                  >  2:87500/6‑251 (MQ=255)
                                                                                                                                         cATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTAGAGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGATCGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCCTAGAAGCCAGTTCCACCGCCAGTACGTAAGGCACGAACAGCGGAATACCCAATGCATTAGCACTGATTGGCGTACCGTCGCTACCCTGATCGTTAACACCGAGGATGGCGTCAACa                                                                                                         >  2:431122/1‑250 (MQ=255)
                                                                                                                                          aTGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTCCGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATAGCTAACACCGAGGATGGCGTAAACAAt                                                                                                       >  2:264110/1‑251 (MQ=255)
                                                                                                                                               gtAAGGGGATCATGCGTGCTCCTCCGTTTTGCTCTCCGCGCTGTCTTCTTTACGATTCCTCAGCCCTTCCCCCCCCCGCTCTTCACGCCGCACTGAGAAGGCCACACCCAGCCCTGCGAGCAGCAGCATAGAACCCAGTCCCCCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATcacc                                                                                                   <  1:336032/250‑1 (MQ=255)
                                                                                                                                                 gtaaggggtacagtcGTGCCCCTCCTTTTTTCTTTCCGCCCTGTCGTCTTTCCGATGCCTCAGCCCTCCACCCGCACGCTTTTCACGCCCGAGGGGAAAGGCCACAACCAGCCCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATcacca                                                                                                  <  2:347353/237‑1 (MQ=255)
                                                                                                                                                       gATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCat                                                                                           >  2:11208/1‑251 (MQ=255)
                                                                                                                                                           cATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCatgat                                                                                        >  1:100141/1‑251 (MQ=255)
                                                                                                                                                            aTGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCatgatg                                                                                       >  1:294296/1‑251 (MQ=255)
                                                                                                                                                            aTGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCatgatg                                                                                       >  1:238795/1‑251 (MQ=255)
                                                                                                                                                                gTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGCACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCg                                                                                   >  1:331012/1‑251 (MQ=255)
                                                                                                                                                                   gcttcgccGTTTTTCTTTCCGCGCTGTCGCCTTTGCGATTGCTCCGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACTACCACACCTGCGACCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGACCGAACAGCGTAATACCCCCTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAGACAATAACCACCAGCATGATGGCCGAc                                                                                 >  2:410428/7‑251 (MQ=255)
                                                                                                                                                                   ctcctcCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGAc                                                                                 >  1:436273/1‑250 (MQ=255)
                                                                                                                                                                    ccccgccttttttCTTTTGGAGCTGTCGTCTTTACGATTCCCCACCACTCCCCCCGCCCGCTTTCCACGACCGACGTGGAGGGCCCCACCCAGACCGGGGAGAAGCAGCAAAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCTCCAGCATGATGGCCGACa                                                                                <  1:278022/243‑1 (MQ=255)
                                                                                                                                                                                   tttcGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCCGTTCCACCGCCAGTACGCAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCa                                                                  >  1:453247/1‑250 (MQ=255)
                                                                                                                                                                                         gcTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCCATCcac                                                            >  2:197035/1‑250 (MQ=255)
                                                                                                                                                                                            gcctccTTTACGATTGCTCAGCCCTCCCCCCGCCCGCTTTCCCCGCCCGACGTGAAAGGCCAAACCCAGCCCGGCGAGCAGCAGAATAGAACCCATTTCCGCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCt                                                        <  1:51929/246‑1 (MQ=255)
                                                                                                                                                                                               gtcTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCg                                                     >  1:99713/1‑251 (MQ=255)
                                                                                                                                                                                                       gATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGc                                             >  1:354811/1‑251 (MQ=255)
                                                                                                                                                                                                        aTTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGcc                                            >  1:161184/1‑251 (MQ=255)
                                                                                                                                                                                                           gCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACt                                         >  1:160885/1‑251 (MQ=255)
                                                                                                                                                                                                            cTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCCTGATGGCCGACAAAATTGCCGGACCACTCCACACCTGCGGTTTCAGCCACTg                                        >  2:37991/1‑251 (MQ=255)
                                                                                                                                                                                                                  ccTTCCCCCGCCCGCTTTTCACGCCCGACGTGGAAGGCAACAACCAGCCCTGCGAGCAGCAGCATAGAAGCCATTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTc                                  <  1:511016/250‑1 (MQ=255)
                                                                                                                                                                                                                  aCTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTc                                  >  2:448746/1‑251 (MQ=255)
                                                                                                                                                                                                                     ccccccgcccgCTCTCCACCACCGACTTAGAAGGCCACACCCGGCCCTGCGACCAGCGGCATAGAAGCCAGTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTcc                                 <  1:88798/246‑1 (MQ=255)
                                                                                                                                                                                                                     ccccccGCACGCTCTTCACGACCGCGGGGGAAGCCCACACCCAGACCTGCGAGCAGCAGCATAGAAGCCTGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTcc                                 <  1:381323/246‑1 (MQ=255)
                                                                                                                                                                                                                      cccccccccgctctccgacgccgacGGGGAACGCCACACCCAGCCCGGCGAGCAGACACATAGACGCCGGTGCCCCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTCCCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTgg                              <  2:513596/231‑2 (MQ=255)
                                                                                                                                                                                                                       aCCCGCACGCCCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGACCAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTCACACCGAGGATGGCGAAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGTCCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGtt                             >  2:81747/1‑251 (MQ=255)
                                                                                                                                                                                                                        cccGCACGCTCTTCACGCCCGACGTGGAAGGCAAAAACCGAACCGGCGAGCAGCAGCATAGACGCCATTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTc                            <  1:125107/251‑1 (MQ=255)
                                                                                                                                                                                                                           gCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACAGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAAAACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGGTTCAGCAACTGGCGTTCCTGTTCGAt                         >  1:397710/1‑251 (MQ=255)
                                                                                                                                                                                                                                            gacGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGt        >  1:500541/1‑251 (MQ=255)
                                                                                                                                                                                                                                                gTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGAAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACATGCGGTTTCAGCCACTGGCGTTCCTGTACGATTTCTGACCCGCCCAGGTTg      >  2:272780/1‑250 (MQ=255)
                                                                                                                                                                                                                                                  ggaaaGGCCACAACCAGCCCTGCGAGCACCAGCATAGAGGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAg    <  1:500870/248‑1 (MQ=255)
                                                                                                                                                                                                                                                    gAAGGCCACAACCATACCGGCGGGCAGCAGCAGAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGca  <  1:168684/251‑1 (MQ=255)
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                 
GTAGCTTCCGGCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGTAAGGGGATCATGCGTGCTCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCGACGTGGAAGGCCACAACCAGACCTGCGAGCAGCAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCA  >  NC_000913/2395190‑2395679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: