Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,395,439 | 0 | A | C | 20.0% | 182.5 / 11.2 | 75 | V153G (GTT→GGT) | nuoJ | NADH:quinone oxidoreductase subunit J |
Reads supporting (aligned to +/- strand): ref base A (39/21); new base C (0/15); total (39/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.44e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GTAGCTTCCGGCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCA > NC_000913/2395190‑2395679 | gTAGCTTCCGGCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAAc > 1:250058/1‑251 (MQ=255) tCCGGCGACCACGAAGGCCAGCGCGGAGGCGTTTATCATGATTTCCAGGCCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAATGCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑GCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCTCCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGag < 2:30510/250‑2 (MQ=255) ccGGCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCt < 1:484681/251‑1 (MQ=255) ggCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGc < 2:279384/251‑1 (MQ=255) ggCGACAACGAAGACTAGAGCGGAGGCGGTAATCATGATTTCCAGCACAATCAACATAAACAGCAGATTGCGTCGGATAACCAGACCGGTTCAGCCAAGAACGAATAAGATTGCCGCGAGGCTCAGTCCATGTGGT‑AAGGGG‑ATCATGCGTGC‑TCATCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGc < 2:296201/251‑1 (MQ=255) gaggccatagcgGAGGCGTTAACCATCATTTCCAGACCAATCAACAATAACGGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCCTTTCGCGCTTGCGTCTTTACGATTGCTCAGCGCTGCGCCCGCACGCTCTTCACTACCG‑ACGTG‑GAAGGCCACACCCAGGCTTGCGagcag‑cagc < 2:300323/242‑1 (MQ=255) ccAGCGCGGAGGCGTTAATCATGATTGCCAGACCAAGCAACATAAACAGCAGATTGCGACTGATAACCAGACCGGTTAAGCCAAGAACGAATAAGAATGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCGGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAg < 1:158890/251‑1 (MQ=255) cAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGa < 2:164654/251‑1 (MQ=255) gAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGt < 1:339445/251‑1 (MQ=255) aGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCTCTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGtt < 1:85189/251‑1 (MQ=255) aGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGtt < 1:28420/251‑1 (MQ=255) ggCGTTAATCATGCTTTCCAGACCACTCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTc > 1:154544/1‑251 (MQ=255) aTCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGcc > 1:364765/1‑251 (MQ=255) gACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCCCGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGcc > 2:10720/1‑251 (MQ=255) gACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGcc > 1:157910/1‑251 (MQ=255) caTCAACATAATCAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCAGGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCGTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGAACTGCGCGCAG‑CAGCATAGAAGCCCGTTCCACCGCCAGTACGTAAGGCCCGa > 2:40516/2‑250 (MQ=255) aTCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCCAGAACGAATAAGATTGCCGCGAGGATCAGTCCCTGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCAAGTTCCACCGCCAGTACGTCAGGCCCGAAc > 2:168684/1‑251 (MQ=255) aaaCAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAAt > 1:157378/1‑251 (MQ=255) aaaCAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATGGCTCAGCACTCCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAAt < 1:151964/251‑1 (MQ=255) ccagcagATTGCAACGAATAACCAGCCCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCATTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑CCCTCCGTTTTTCTTTTCGCGCTGTCGTTTTTACGATTGCTCAGCACTCCACCCGCCCGCTCTCCACGCCCG‑AGGTG‑GAAGGCCACACCCAGCCCTGCGAGCAG‑CAGCATAGAAGCCATTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATAc < 1:39285/250‑1 (MQ=255) gATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTCAGGCCCGAACAGCGTAATAccccatg > 2:105867/1‑247 (MQ=255) ccGGATAACCAGCCCGTTTAACCCAAGAACAAATAAGTTTGCCGCGAGGATCAGTCCATTTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCTTCTTTACTATTGCTCAGCACTTCCCCCGCCCGCTCTTCACGCCCG‑ACGTG‑GAAGGCCACAACCAGCCCTGCGAGCAG‑CAGCATAGAAGCCATTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGc < 1:199222/250‑1 (MQ=255) gggtAACCAGGCCGGTAAAGCCAGGAACGAATAAGATGGCCGGGAGGATCATTCCATGTTTT‑AGGGGG‑ACCAGGCGTGC‑TCCTCCGTTTTTCTTTCCGCGCTGTGTTCTTTACGATTGCCCAGCCCTACCCCCGCACCCCCTTCACGACCG‑GCGTG‑AAAGCCCACAACCAGCCCTGCGGGCAG‑CAGCAAAGAAGCCAGTTCCGCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCAc < 1:78084/248‑1 (MQ=255) aTAACAAGCCCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGCCCATTTTGT‑AAGGGG‑ATCATGCGTGC‑TCCCCCGTTTTTCTTTTCGCGCTTTCGTCTTTACGATTGCTCAGCACTTCCCCCGCCCGCTCTTCACGCCCG‑ACGGG‑GAAGGCCAAACCCAGCCCTGCGAGCAG‑CAGCATAGAAGCCATTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTg < 1:259579/251‑1 (MQ=255) cAGACCGGTTAAGCCACGAACGAATAAGATTGCCGCGCGGATCAGTCCATGTTAT‑AAGGGG‑ATCATGCGTGC‑TGCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACATG‑GGAGGCCACAACCAGACCAGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCATTACGCAAGGCCCGAACAGCGTAATAACCACTGCTTTAGCACTGAtt > 2:419279/1‑249 (MQ=255) gACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCAACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGAACTGATTGGCg > 2:333471/1‑251 (MQ=255) cgggtaaaGCCAAGACCAAATAAGTTGGCCGCGAGGATCATTCCATGTTGT‑GAGGGA‑TTCATGCGTGC‑CCCTCCTTTTTTCTTTTCGCGCTGTCTTCTTTCCAATTGCACACCCCTCCCCCCCCCCCCTCTCCACGACCG‑ACGTG‑GAAGGCCACACCAAGCCCTGCGAGCAG‑CACCAAAGAAGCCATTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTa < 2:364765/245‑1 (MQ=255) ccGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGt > 2:51929/1‑250 (MQ=255) ggTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTAcc > 1:40375/1‑251 (MQ=255) gTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACACCCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCg < 1:6425/251‑1 (MQ=255) gTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCg > 1:390391/1‑251 (MQ=255) caataaCGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATAc > 2:503352/5‑251 (MQ=255) aGAACGAATAAGATTGCCGCGGGTATCAGTCCTTGTTTT‑AGGGGG‑ATCATGCGTGC‑CCCCCCGTTTTTCTTTCCGCGCTGTCGTCTTTACGATTCCTCAGCACTTCCCCCGCCCGCTCTTCACGACCG‑ACGTG‑GAAGCCCACAACCAGACCTGCGAGCAG‑CAGCAGAGAAGCCAGTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATAccc < 1:167112/251‑1 (MQ=255) gAACGAATAAGTTTGCCGCGAGGACCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCCCCTTTTTTCTTTTCGCGCTGTCTTTTTTACGATTGCTCAGCACTCCCCCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGCCCTGCGGGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCt < 1:328073/251‑1 (MQ=255) aaaCGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑TTCATGCGTGC‑CCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTCCACCCGCCCGCTCTTCACGACCG‑ACGTG‑GAAGGCCACACCCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCt < 1:364853/250‑1 (MQ=255) aagaaGAGTGCCGCGAGGAGCAGTCCATGTTG‑‑AAGGGGCATCAGGCGTGC‑TCCTCCTTTTTTTTTTCCGCGCTGTCGTCTTTACGATTGCCCATCCCTCCCCCCCCCCGCTCTCCACGCCCG‑AGGGG‑GAGGCCCAAAACCAGACCTGCGAGCAC‑CACCAAAAAAGCCATTCCCTCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCGTTAGCACTGATTGGCGTACCGTCGATACCCTGAt < 2:157378/246‑1 (MQ=255) agtctgcccacgAGTATCCGTCCATGT‑GTCAAGGGG‑AGCATGC‑TGCCTCCTCCTTTTTTTTTGTCGCGCTTCCTTCTTTACGATTGCCCAGCACTTCCCCCGCCCGCTCTCCCAGACCG‑ACGTG‑TAAGGCCACACCAAGACTTGCGACCCG‑CAGCAAATACTCCAGTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCTCTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTa < 2:123392/241‑1 (MQ=255) ggCCGCGAGGATCAGTCCATGTTGG‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCCCAGCCCTCCCCCCCCACGCTCTTCACGACCG‑ACGTG‑GAAGCCCACAACCAGACCGGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACAcc < 1:4281/250‑1 (MQ=255) gCCGCGAGGATCAGTCCATGTTGT‑AAGGGA‑ATCAGGCGTGC‑TCCTCTGTTTTTCTTTTCGCGCTGTCTTCTTTACGATTGCCCAGCACTCCCCCCGCACGCTCTTCACGCCCG‑ACGTG‑GAGGGCCACACCCAGCCCTGCGAGCAG‑CAGCATAGAAGCCGGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACAcc < 1:28997/250‑1 (MQ=255) ccGCGAGGATCAGTCCATGTGGT‑AGGGGG‑ATCGTGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCCCACCACTCCCCCCGCCCGCTCTTCACGACCG‑CCGGG‑GAAGGCCACACCAAGACCTGGGAGCAG‑CATCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGa < 1:211121/251‑1 (MQ=255) cgAGGATCAGTCCCTGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAgg > 2:261193/1‑250 (MQ=255) gAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGAt > 2:197366/1‑251 (MQ=255) cggagcAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATg > 2:87500/6‑251 (MQ=255) cATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTAGAGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGATCGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCCTAGAAGCCAGTTCCACCGCCAGTACGTAAGGCACGAACAGCGGAATACCCAATGCATTAGCACTGATTGGCGTACCGTCGCTACCCTGATCGTTAACACCGAGGATGGCGTCAACa > 2:431122/1‑250 (MQ=255) aTGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTCCGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATAGCTAACACCGAGGATGGCGTAAACAAt > 2:264110/1‑251 (MQ=255) gt‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTGCTCTCCGCGCTGTCTTCTTTACGATTCCTCAGCCCTTCCCCCCCCCGCTCTTCACG‑CCGCAC‑TGAGAAGGCCACACCCAGCCCTGCGAGCAG‑CAGCATAGAACCCAGTCCCCCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATcacc < 1:336032/250‑1 (MQ=255) gtaaggggtacagtcGTGC‑CCCTCCTTTTTTCTTTCCGCCCTGTCGTCTTTCCGATGCCTCAGCCCTCCACCCGCACGCTTTTCACGCCCG‑AGGGG‑AAAGGCCACAACCAGCCCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATcacca < 2:347353/237‑1 (MQ=255) g‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCat > 2:11208/1‑251 (MQ=255) cATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCatgat > 1:100141/1‑251 (MQ=255) aTGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCatgatg > 1:294296/1‑251 (MQ=255) aTGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCatgatg > 1:238795/1‑251 (MQ=255) gTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGCACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCg > 1:331012/1‑251 (MQ=255) gcttcgccGTTTTTCTTTCCGCGCTGTCGCCTTTGCGATTGCTCCGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACTACCACACCTGCGACCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGACCGAACAGCGTAATACCCCCTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAGACAATAACCACCAGCATGATGGCCGAc > 2:410428/7‑251 (MQ=255) c‑tcctcCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGAc > 1:436273/1‑250 (MQ=255) ccccgccttttttCTTTTGGAGCTGTCGTCTTTACGATTCCCCACCACTCCCCCCGCCCGCTTTCCACGACCG‑ACGTG‑GAGGGCCCCACCCAGACCGGGGAGAAG‑CAGCAAAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCTCCAGCATGATGGCCGACa < 1:278022/243‑1 (MQ=255) tttcGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCCGTTCCACCGCCAGTACGCAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCa > 1:453247/1‑250 (MQ=255) gcTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCCATCcac > 2:197035/1‑250 (MQ=255) gcctccTTTACGATTGCTCAGCCCTCCCCCCGCCCGCTTTCCCCGCCCG‑ACGTG‑AAAGGCCAAACCCAGCCCGGCGAGCAG‑CAGAATAGAACCCATTTCCGCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCt < 1:51929/246‑1 (MQ=255) gtcTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCg > 1:99713/1‑251 (MQ=255) gATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGc > 1:354811/1‑251 (MQ=255) aTTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGcc > 1:161184/1‑251 (MQ=255) gCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACt > 1:160885/1‑251 (MQ=255) cTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCCTGATGGCCGACAAAATTGCCGGACCACTCCACACCTGCGGTTTCAGCCACTg > 2:37991/1‑251 (MQ=255) ccTTCCCCCGCCCGCTTTTCACGCCCG‑ACGTG‑GAAGGCAACAACCAGCCCTGCGAGCAG‑CAGCATAGAAGCCATTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTc < 1:511016/250‑1 (MQ=255) aCTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTc > 2:448746/1‑251 (MQ=255) ccccccgcccgCTCTCCACCACCG‑ACTTA‑GAAGGCCACACCCGGCCCTGCGACCAG‑CGGCATAGAAGCCAGTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTcc < 1:88798/246‑1 (MQ=255) ccccccGCACGCTCTTCACGACCG‑CGGGG‑GAAGCCCACACCCAGACCTGCGAGCAG‑CAGCATAGAAGCCTGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTcc < 1:381323/246‑1 (MQ=255) cccccccccgctctccgacgccg‑acGGG‑GAACGCCACACCCAGCCCGGCGAGCAGACA‑CATAGACGCCGGTGCCCCCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTCCCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTgg < 2:513596/231‑2 (MQ=255) aCCCGCACGCCCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGACCAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTCACACCGAGGATGGCGAAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGTCCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGtt > 2:81747/1‑251 (MQ=255) cccGCACGCTCTTCACGCCCG‑ACGTG‑GAAGGCAAAAACCGAACCGGCGAGCAG‑CAGCATAGACGCCATTCCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTc < 1:125107/251‑1 (MQ=255) gCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACAGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAAAACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGGTTCAGCAACTGGCGTTCCTGTTCGAt > 1:397710/1‑251 (MQ=255) g‑acGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGt > 1:500541/1‑251 (MQ=255) gTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGAAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACATGCGGTTTCAGCCACTGGCGTTCCTGTACGATTTCTGACCCGCCCAGGTTg > 2:272780/1‑250 (MQ=255) ggaaaGGCCACAACCAGCCCTGCGAGCAC‑CAGCATAGAGGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAg < 1:500870/248‑1 (MQ=255) gAAGGCCACAACCATACCGGCGGGCAG‑CAGCAGAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGca < 1:168684/251‑1 (MQ=255) | GTAGCTTCCGGCGACCACGAAGGCCAGCGCGGAGGCGTTAATCATGATTTCCAGACCAATCAACATAAACAGCAGATTGCGACGGATAACCAGACCGGTTAAGCCAAGAACGAATAAGATTGCCGCGAGGATCAGTCCATGTTGT‑AAGGGG‑ATCATGCGTGC‑TCCTCCGTTTTTCTTTTCGCGCTGTCGTCTTTACGATTGCTCAGCACTTCACCCGCACGCTCTTCACGACCG‑ACGTG‑GAAGGCCACAACCAGACCTGCGAGCAG‑CAGCATAGAAGCCAGTTCCACCGCCAGTACGTAAGGCCCGAACAGCGTAATACCCACTGCTTTAGCACTGATTGGCGTACCGTCGATACCCTGATCGTTAACACCGAGGATGGCGTAAACAATCACCACCAGCATGATGGCCGACAAAATTGCCGGACCAATCCACACCTGCGGTTTCAGCCACTGGCGTTCCTGTTCGATTTCTGAACCGCCCAGGTTGAGCA > NC_000913/2395190‑2395679 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |