| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,159 | Δ33,804 bp | [intA]–[glaH] | 28 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjW, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, ypjB, ypjC, ileY, [glaH] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756159 | 2789962 | 33804 | 56 [0] | [0] 58 | [intA]–[glaH] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjW,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,ypjB,ypjC,ileY,[glaH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756158 | 0 (0.000) | 56 (0.930) | 48/494 | 0.2 | 100% | intergenic (+203/‑1) | ssrA/intA | tmRNA/integrase IntA |
| ? | NC_000913 | 2789963 = | 0 (0.000) | intergenic (+1/‑19) | glaH/lhgD | glutarate dioxygenase GlaH/L‑2‑hydroxyglutarate dehydrogenase | |||||
TTCGTCCAGCCGAAAGACTTCGAAGAAGGCGTGTGGTTGAGCGAGCTTTCCGACGCCATTGAAACCAGCAAAGGCATTCTTTCTGTGCCCGTTCCCGTTGGCAAATTCCTGTTGATTAACAACCTGTTCTGGCTGCACGGTCGCGACCGCTTTACTCCGCACCCGGATCTGCGCCGTGAACTGATGCGCCAGCGTGGCTATTTCGCTTACGCCTCTAACCACTACCAGACGCATCAGTAAGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGCCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCG > NC_000913/2789723‑2790213 | atttcggacgcgggttcaactcccgccagctccaccaaaattctccatcggtgattaccagagtcatccgatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGa > 1:362311‑M2/241‑250 (MQ=255) cgtcgggttcaactaccgccagctccaccaaaattctccatcggtgagtaccagagtcatccgatgaagtcctaagagcccgtacggcgcaagccctgcgggctgttgtgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgagaggcccaacgaaaagctctatagtttacgttgggcctaaacgcagggagaatccccGCGCAAAGGAATAGAGCg < 2:144581‑M2/18‑1 (MQ=255) cgggttcacctcccgccagctccaccaaaattctccatcggggattaccagagtcatccgatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGAt > 2:376417‑M2/231‑251 (MQ=255) cctcccgccagctccaccaaaattctccatcggtgattaccagagtcatccgatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgcactcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGAtt < 2:434209‑M2/29‑1 (MQ=255) cccgccagctccaccaaaattctccatcggtgattaccagagtcatccgatgaaggcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaagttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGAtttt < 1:151347‑M2/31‑1 (MQ=255) caccaaaattctccatcggtgattaccagagtcatccgatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTggc > 1:132255‑M2/209‑251 (MQ=255) caccaaaattctccatcggtgattaccagagtcatccgatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTggc > 1:61954‑M2/209‑251 (MQ=255) attaccagagtcatccgatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaccgcagggagactccccGCGACAAGGAATTGAGCGGATGT‑ATGGTTTTGTGATTATTGGCGGCGGCATAATCGGCATGTCg > 1:524592‑M2/188‑251 (MQ=255) ccgatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACt > 1:262681‑M2/174‑251 (MQ=255) cgatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCCTCGGCATGTCGGCCGCCATGCAACtg > 1:139811‑M2/173‑251 (MQ=255) gatgaagtcctaagagcccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggctcattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGAACGCCATGCAACtg > 1:236107‑M2/172‑250 (MQ=255) cccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaacgctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGCATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGGATCATCGGCATGTCGACCGCAATGCAactgattgatggccaaccggg > 1:220108‑M2/156‑241 (MQ=255) ccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGAc < 1:351819‑M2/97‑1 (MQ=255) ccgcacggcgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGAc < 1:256559‑M2/97‑1 (MQ=255) cgcaagccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCAt > 1:229958‑M2/147‑251 (MQ=255) gccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGt > 1:326054‑M2/142‑251 (MQ=255) ccctgcgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGtt > 1:486008‑M2/141‑251 (MQ=255) cgggcttttttgtgccctcaatttgtcccgcgaagtccgaagagcactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTTTCCGGACGCCCGCATTG‑CGTTGCTgg > 2:10861‑M2/136‑251 (MQ=255) gggcttttttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCCTGCAACTGATTGATGGCTATCCGGACGCCCGCATTG‑CGTTGCTgg > 2:498332‑M2/135‑250 (MQ=255) ttgttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatcagaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGaaaaa < 2:218076‑M2/121‑1 (MQ=255) ttgtgccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGt > 1:300817‑M2/127‑251 (MQ=255) gccctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCg < 2:362311‑M2/128‑1 (MQ=255) cctcaatttgtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGccc < 2:352625‑M2/131‑1 (MQ=255) gtcccgcgaagtccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTc > 2:451868‑M2/112‑251 (MQ=255) cgaagtccgaagagaactaattaaatccgaaccttttaggcccattgctaggcccaacgaaaagctctattgattacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGCCCGCCCTGCCACTGATTGATGTCTATCCGGACGCCCGCATTGACG‑TGCCGGAAACAGAGTCCGCCCCGGCCcgtcccc > 2:370622‑M2/106‑245 (MQ=255) ccgaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGcc < 1:194028‑M2/152‑1 (MQ=255) ccgaagagaactaattaaatacgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCCTGCAACTGATTGATGTCTATCCGGACGCCCGCCTTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCATACGGGcc > 2:107093‑M2/100‑251 (MQ=255) gaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGGAAAAGAGTCCGCCCCGGCCTGTCACCCGAAGGGCcac > 2:254099‑M2/98‑251 (MQ=255) gaagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCcac > 1:126040‑M2/98‑251 (MQ=255) aagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGGTTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGGCACCAGACGGGCcac > 1:350908‑M2/97‑250 (MQ=255) aagagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGGCGGGccacc > 1:499153‑M2/97‑250 (MQ=255) agagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGCGTCCGCCCCGGCCTGTCACCAGACGGGAcaca > 2:105461‑M2/96‑250 (MQ=255) gagaactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCacaac > 1:482599‑M2/95‑251 (MQ=255) aactaattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaaagcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAgc > 1:462263‑M2/92‑251 (MQ=255) aattaaatccgaaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAgaggcg > 2:198445‑M2/88‑251 (MQ=255) cgaacctttaaggcccattgataggccccacgaaaagctctattgtttacgttgggcctaaacgccgggcgactccccGCGCAAAGGAATTGAGCGGCTGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCACCTGAGTGATGTCTATCCGGACGCCCGCATTG‑CGTTGACGGCAAAAGCCACCACCCCGGCCCGTCACCAGACGGgccacaaccgcggcggtgtccatc > 2:36247‑M2/79‑242 (MQ=255) aaccttttaggcccattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGcc < 1:149966‑M2/175‑1 (MQ=255) gggcccattgataggcccaacgaaaaccgctattgtttgcgttgggcttaaacgcagagatactccccGCGCAAAGTAATTGAGCGGATTT‑ATGATTTTTTGATTATTGGCGGCGTCGTCATCGGCATGTCGACCGCCGTGCAACGGATTGAGGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCGGACGGGCCACAACAGCGGCTTGatccatgccttggtct < 2:403668‑M2/182‑8 (MQ=255) cattgataggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCTGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTaca < 1:376417‑M2/188‑1 (MQ=255) aggcccaacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCgg > 1:448224‑M2/57‑251 (MQ=255) aacgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCt > 1:392159‑M2/51‑251 (MQ=255) cgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTGGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCCCCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGa < 1:498332‑M2/203‑1 (MQ=255) cgaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATGGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGa < 1:486182‑M2/203‑1 (MQ=255) gaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACtgattgat < 2:518059‑M2/85‑1 (MQ=255) gaaaagctctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACtgattgat > 1:518059‑M2/48‑132 (MQ=255) tctattgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCACGCCGGGGTCTATTACACGTCCGGCAGCCTGAAGgcgc > 1:82230‑M2/41‑249 (MQ=255) ttgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACCGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGCAGGCGCAGgttt > 2:392334‑M2/37‑251 (MQ=255) tgtttacgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGAAGGCGCAGtttt < 1:451868‑M2/215‑1 (MQ=255) acgttgggcctaaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGAAGGCGCAGTTTTGCCTg < 1:422694‑M2/220‑1 (MQ=255) gggcaaaaacgaggggagcaccccggcgcAAGGGAATTGGGCGGATGT‑AGGATTTTGTGATTTTGGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCAGGG‑CGTGGCGGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGGCTATTACACGTCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGa < 2:234752/226‑1 (MQ=255) cctaaacgcagggagaccccccTCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGCCCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAAGGTCCGCCCCGGCCGGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAAc < 1:446148‑M2/229‑1 (MQ=255) aaacgcagggggacaccccGCGCAAAGGAATTGAGCGGA‑GTGAGTATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGTCCGCCATGCAACGGATGGTTGTCTTTCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCGGTCCCCAGACGGGCCGCAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAACcgc < 2:121354‑M2/232‑1 (MQ=255) aaacgcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAAcc < 1:121785‑M2/230‑1 (MQ=255) gcagggagactccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAAAAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAACCGCgccc > 1:192440‑M2/16‑250 (MQ=255) agcctccccGCGCAAAGGAAATGAGCGGCTGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATTGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCCGGAAAAAGACTCCGCCCCCGCCTGTCACCAGACGGGCCACAACACCGGCGTGATCCATGCCGGGGCCTATTACCCGTGCGGCCGCCTGAAGGCGCAGTTTGGTCTGGCGGGAAACCGCGCCACCaa > 2:370910‑M2/10‑249 (MQ=255) ctccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTAcacgtcc > 2:117622‑M2/7‑196 (MQ=255) ctccccGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTAcacgtcc < 1:117622‑M2/193‑4 (MQ=255) gcgcAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGTCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCg > 1:2817/1‑251 (MQ=255) | TTCGTCCAGCCGAAAGACTTCGAAGAAGGCGTGTGGTTGAGCGAGCTTTCCGACGCCATTGAAACCAGCAAAGGCATTCTTTCTGTGCCCGTTCCCGTTGGCAAATTCCTGTTGATTAACAACCTGTTCTGGCTGCACGGTCGCGACCGCTTTACTCCGCACCCGGATCTGCGCCGTGAACTGATGCGCCAGCGTGGCTATTTCGCTTACGCCTCTAACCACTACCAGACGCATCAGTAAGCGCAAAGGAATTGAGCGGATGT‑ATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTCTATCCGGACGCCCGCATTG‑CGTTGCTGGAAAAAGAGTCCGCCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGGTCTATTACACGCCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCG > NC_000913/2789723‑2790213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |