New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	18 (0.300)	17/494	2.0	28.1%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	= 2421268	46 (0.770)					coding (648/648 nt)	yfcG	disulfide bond oxidoreductase YfcG

CCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289874‑2290113 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCCAGGCATTAACCCACGGCCAGCAGGCAATATCCGCAATGCTGTAGTTCTCGCCTCCCAGCCAGGGCGAGTTTTCCAGCCGCTTGTTCAGTACATGGTAAAGACGCTGAGTTTCAACCT  <  NC_000913/2421268‑2421021                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCAGCGGATAAGTTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGACGCCTTTCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCGTAATGCTGAATTGCCTGTCGGCGAAGGTAAGTTGATGACTCATGATGTACCCTGTTCTATGCCTCCAGAGGACAATCATGATCTCATATCAGGGACTGGTTCGCACCTTCCTGAACTctgta                                                                                                                                                                                                                                               <  2:423076/251‑6                           CCAGCCTTGGGGTAAAACGGCTCGATGTCTTCCCCCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTT                                                                                                                                                                                                                      <  2:304063/250‑1                                   GGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGCCAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCTCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGC                                                                                                                                                                                                             >  2:413533/1‑251                                        AAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCC                                                                                                                                                                                                        <  1:243233/251‑1                                                                     TGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTC                                                                                                                                                                            <  1:311640/250‑1                                                                                        CCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCC                                                                                                                                                         <  1:15150/250‑1                                                                                                   AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCT                                                                                                                                             >  1:36512/1‑251                                                                                                            TCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATT                                                                                                                                    >  1:268955/1‑251                                                                                                             CTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGTTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAAT                                                                                                                                     <  2:120218/249‑1                                                                                                                          ACGGCGCTTACTGCTGAATTCCCTGTCGGCGAAGGCAAGTTGCTGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCC                                                                                                                       >  2:130321/1‑250                                                                                                                            GGCGGTTACTGCTGAACTCTCTTGCGGCGAAGGTAAGGTGATGCCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCTAACGCTCATCTCCGAGTTGTGCTCTTAGCAGTGCCTGCACGGTGGCAGGGTGCGAACGGATCCGCGTATGCCAGTTCTTGACTGCCGGATACAGTGCTTTGTCAATTCGCTGGCGAGACCAGG                                                                                                                    <  2:124984/251‑1                                                                                                                                           ATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCCAGGCATTTACCCACGGCC                                                                                                     >  2:395346/1‑251                                                                                                                                                         AAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCCAGGCATTAACCCACGGCCAGCAGGCAATATCC                                                                                       >  2:69355/1‑251                                                                                                                                                          AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCCAGGCATTAACCCACGGCCAGCAGGCAATATCCG                                                                                      <  1:251110/251‑1                                                                                                                                                                                                             ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCCAGGCATTAACCCACGGCCAGCAGGCAATATCCGCAATGCTGTAGTTCTCGCCTCCCAGCCAGGGCGAGTTTTCCAGCCGCTTGT                                   >  1:323955/1‑251                                                                                                                                                                                                                                ACTTGTTCGCACCTTCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCCAGGCATTAACCCACGGCCAGCAGGCAATATCCGCAATGCTGTAGTTCTCGCCTCCCAGCCAGGGCGAGTTTTCCAGCCGCTTGTTCAGTACATGGTAAAGACG                <  1:395346/251‑1                                                                                                                                                                                                                                      TCGCACCTTCCTTAACAAACCGAACGCTCAGCACCGAGTTGTGCTTTTAGCAGAGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCGAGGTCAATTCGCTGGCGAGTCCAGGCATTAACCCACGGCCAGCAGGCAATATCCGCAATGCTGTAGTTCTCGCCTCCCAGCCAGGGCGAGTTTTCCAGCCGCTTGTTCAGTACATGGTAAAGACGCTGAG           <  2:11912/250‑1                                                                                                                                                                                                                                              TCCTTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCCAGGCATTAACCCACGGCCAGCAGGCCATATCCGCAATGCTGTAGTTCTCGCCTCCCAGCCAGGGCGAGTTTTCCAGCCGCTTGTTCAGTACATGGTAAAGACGCTGAGTTTCAACCT  >  1:279226/1‑251                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289874‑2290113 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAACTATCCGAACGCTCATCACCGAGTTGTGCTTTTAGCAGTGCCTGCCCGGTGGCAGGGCGCGAACGGATCCGCTCATGCCAGTTCTTGACTGCCGGATACATTGCTAGGTCAATTCGCTGGCGAGTCCAGGCATTAACCCACGGCCAGCAGGCAATATCCGCAATGCTGTAGTTCTCGCCTCCCAGCCAGGGCGAGTTTTCCAGCCGCTTGTTCAGTACATGGTAAAGACGCTGAGTTTCAACCT  <  NC_000913/2421268‑2421021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.