| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,287,719 | 0 | T | A | 28.9% | 158.7 / 28.1 | 76 | intergenic (+52/‑45) | ytcB/nrfA | protein YtcB/cytochrome c552 nitrite reductase |
| Reads supporting (aligned to +/- strand): ref base T (48/6); new base A (0/22); total (48/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.18e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAGCGTGTTG > NC_000913/4287472‑4287962 | aaGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATaa > 1:431575/1‑250 (MQ=255) gTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATaaaaa < 1:837289/251‑1 (MQ=255) aGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAAc < 2:817929/250‑1 (MQ=255) cAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGc > 2:150174/1‑250 (MQ=255) aaaTAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGca > 1:167482/1‑250 (MQ=255) aTAAACGGCAGGGTAATTTTTGAAGGACAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGG‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGcaac > 1:933166/1‑250 (MQ=255) ggTAATTGTTGAAGTCCAGCAAAAAAAGTGTATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTGGAAAAA‑GAGAAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACAGGCACTTACA‑‑TTGTGTTAAATACAACA‑TTCA‑CA‑GTGTGGTTTTTTGTTCAACTTGGGGGCGAGAAATG‑TAATGACAGTTGAGGG‑GCGGTT‑CCTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAAtg < 1:788685/251‑2 (MQ=255) gTAATTTTTGAAGGTAAGCAACAAAATTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GTATG‑TGTTGAAAAAAGAGAAAGATACTG‑ACTACCTCAAAAGTGTTTTTTTACATCCATTTAAAA‑TTG‑ATAAAAGACAAAA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTGGGT‑GGGTTT‑ACTGTCGGGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTc < 2:1184274/251‑1 (MQ=255) aaTTTTTGAAGGTCAGAAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAG‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCATTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGTTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCg < 2:69662/250‑1 (MQ=255) aagttCAGAAACAAAAGTTAATTAATTTTTGGGGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGAT‑CTGGACTAACTCAAAATTGGTATTTTCCTGGCACTTAAAA‑TTA‑ATAAAAGA‑AACACTTCA‑CA‑GTGTGGTTATTTTTGACACATAGGGCCGAGAAATG‑TCATGAGATTGTAGGG‑GCGGTT‑TCTATCTTGAAAACCAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGcc < 1:865410/247‑1 (MQ=255) aagaaaaaaaaGTTGATTAATTTTTTGTGGAACATG‑AATTATTGCATGTGGTTGAAAAA‑TAGAAGGATACTT‑CCAACCTCTAAAGTGGTTTTTTACAGGCCCTTACAA‑TTG‑AT‑AAAAACAACAATCCA‑GA‑GTGTGTTTTTTTGTTACACATAGGGGCGAGCATTG‑TCATGACGGTGT‑GGTCGCGGTT‑ACTGTCGTAAAAAACAAAAAAAGCC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTAt < 2:568320/244‑1 (MQ=255) aacaaAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATg > 2:511105/1‑237 (MQ=255) aaaaaaaGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTTTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCCCTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGTTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTGGGG‑GCGGTT‑ACTGTCGTAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATg < 1:511105/234‑1 (MQ=255) aaaaGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAgg > 1:555832/1‑251 (MQ=255) aatttGATTATTTCTGTGAGGAACATGATGTTAG‑GAATGTGGTAAAAAAA‑GAGGAAAATACTG‑ACAAACTCTAAAGTGGTTTTTTAATTGCACTTAAAA‑TGG‑ATTAAAGAAAACA‑TTCA‑CG‑GGGTGGTTATTTGTACCACATGGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GGGTTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGAt < 2:787110/248‑1 (MQ=255) tgcttAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGACAAC‑GAGGATGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATaac > 2:354147/4‑249 (MQ=255) gATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATaaaa > 1:170412/1‑250 (MQ=255) aTTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAac > 1:323416/1‑251 (MQ=255) aTTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAac > 2:114701/1‑251 (MQ=255) at‑gcatgcTGTTAAAAAA‑GAGAAAAATACTG‑ATTAACTCAAAAGTGGTTTTTTACATGCATTTAAAA‑TTA‑ATAAAAGACAACA‑TTCA‑CA‑GTGGGTTTTTTTGTTACACATGGGGGCGAG‑AATGGTCATGACGGTGTAGGG‑GGGGTT‑ACTTTCTTAAAAAAAAAAAAAACCC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTa < 1:1140069/250‑1 (MQ=255) gcatgcTGTTGAAAAA‑GTGGAAGATACTG‑ACCACCTCTAACGCGGTATTTTACATACACTTACAA‑TTG‑ATTAACAACACCA‑TTCA‑AA‑GTGTGGCTATTTGTTACACATCGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTAGTGAAAAACAATAAAAAAC‑GCCATTGCAACAATGGCGCAATTCGGCTGAAGCCACTCTGACAAGGATAACAATAAACGCACGCCGTATCTCCAGCTTATTg > 2:308513/1‑251 (MQ=255) catgcTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTg > 1:589382/1‑250 (MQ=255) aaaaaaagaggagaatacaactaaaCTCAAAAGTGGTTTTTTACATTCGTTTAAAA‑TTT‑ATTAAAAACA‑CC‑TTCAACA‑GTGGGGTTTTTTTTTAAAAATGGGGGGGAGGAATG‑TCATGACGGGGTGGGT‑GCGTTT‑ATTGTC‑AGAAAAAAAAAAAAAACCCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCtttt < 2:871541/228‑1 (MQ=255) aaa‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGAAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttct > 2:58446/1‑251 (MQ=255) aa‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttctt > 2:142766/1‑251 (MQ=255) aaGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTcc > 2:631933/1‑236 (MQ=255) aaaatcctgacaacctcaaaaGGGGTATTTTACATGCATTAAAAA‑TTG‑ATAAAAGAAAACA‑TTCA‑CA‑GGGTGTTTTTTTTTTACACATGGGGGCGAGAATTG‑TCATGACAGTTTAGGT‑GGGTTT‑CCTGTCGTAAAAAAAAAAAAAACCC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTcc < 1:631933/218‑1 (MQ=255) tACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGCCAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCt > 2:881086/1‑251 (MQ=255) tG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGAGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTATTTCTTTTTCACTTCTGtt > 2:1154970/1‑251 (MQ=255) g‑ACTAACTCAAAAGTGGATTTTTACAGTCATTTACAA‑TTG‑ATAAAAGAAAAC‑‑TTTA‑CAAGTTTGGTTTTTTTTTCCACTGGGGGGGGACAAATG‑TCATGACAGTG‑AGGG‑GGGGTTTCCTGTGGTAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGtt < 1:789518/250‑1 (MQ=255) aaCTCTAAAGTGTTATTTTACATGCATTTACAA‑TTT‑ATTAAAGACAACA‑TCCA‑AA‑GTGTGTTTATTTGTTACACATAGGGGCGAGCATTG‑TAATGAAAGTGTGGTT‑GCGTTT‑CCTGCCGTAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACg < 1:931567/250‑1 (MQ=255) aCTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCt > 2:756483/1‑251 (MQ=255) ataagttGGTATTTTACATGC‑CTTAAAAATTG‑ATAAAAGAAAAAA‑TTCA‑AA‑GGGGGGTTTTTTGTTAAACAGAGGGGAAAAAAAGG‑TAAGGACGGTGTGGGT‑GGGGTT‑ACTGTTGAAAAAAAAAAAAAAACCC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGaa < 2:434213/245‑1 (MQ=255) aaaGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGAAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAAc > 2:692908/1‑250 (MQ=255) aaGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAAAA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCACTTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACa > 2:981770/1‑250 (MQ=255) aGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACaa > 2:390263/1‑250 (MQ=255) aGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACaa > 1:293194/1‑250 (MQ=255) tttACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTAt > 2:337711/1‑190 (MQ=255) tttACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GGGTGGTTATTTGTTACACATGGGGGCGAGCATTG‑TAATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTAt < 1:337711/190‑1 (MQ=255) tACATGCACTTACAA‑TTG‑ATTAAAGAAAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGAAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAAAAATAAAAACC‑GCCATTGCAACAATGGCGAAATTCGGATGAAGCCCCTATGAAAAGGATAACAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTtttttcttttta > 2:635082/1‑218 (MQ=255) cATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCg > 2:762024/1‑251 (MQ=255) tGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGc > 1:993158/1‑250 (MQ=255) cAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGt > 2:654647/1‑251 (MQ=255) tG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAAt > 2:609668/1‑125 (MQ=255) tG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGAAATG‑TCATGACAGTGTAGGT‑GCGGTT‑CCTGTCGTGAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAAt < 1:609668/125‑1 (MQ=255) ttAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAAc > 2:981058/1‑219 (MQ=255) tAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTgg > 2:154476/1‑251 (MQ=255) tAAAGACAACA‑TTCA‑CA‑GTGTGGGTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGAATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACtgggg > 2:374166/1‑248 (MQ=255) acaaca‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCg > 1:448348/1‑251 (MQ=255) caaca‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCg > 1:710072/1‑250 (MQ=255) aaaca‑TTCA‑CA‑GTGTGTTTATTTGTTACACATGGGGGCGAGAAATG‑CCATGACAGTGTGGGT‑GCGTTT‑ACTGTCGTAAAAAACAAAAAAACCC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCga < 1:483858/250‑1 (MQ=255) aaca‑TTCA‑CA‑GTGTGGTTATTTGTTACCCATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGACGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTAACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCgc > 2:265190/1‑249 (MQ=255) ca‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCga > 2:209168/1‑248 (MQ=255) ttCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAAt > 2:759743/1‑251 (MQ=255) tCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCCCAAAACCTGTAACTGTGGACGCGAAGAATg > 2:800575/1‑251 (MQ=255) tgtgGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCt > 2:688371/1‑251 (MQ=255) gTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGc > 1:573149/1‑251 (MQ=255) gTTACACATAGGGGCGAGCAATG‑TCATGAGAGTGTAGGT‑GGGTTT‑ACTGTCGTAAAAAAAAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCgcag < 1:654647/251‑1 (MQ=255) tcacacATTGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGATT‑ACTGTCGTGAACAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACCAGGATAAAAATAAACGCACGCCGAATCTTCAGCTTATTGATGCCTTTTTTCTTTTTCATTTCTGTTCACGCTGGACAAACGGCTGCTCCCGCAAAACCTGTAACGGGGGAAGCGAAGAATGAAACCTTTGCCCCgcagc > 2:651792/3‑251 (MQ=255) ggggCGAGAAATG‑TCAAGACAGTTGAGGT‑GCGGTT‑TTTTTCGTAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATc < 1:800575/251‑1 (MQ=255) gCAATG‑TCATGACAGTGTAGGT‑GCGTTT‑ACTGTCGAAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATc < 1:64918/244‑1 (MQ=255) gCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATc > 2:64918/1‑244 (MQ=255) taatgacggggtgggggggttt‑ACTGTCGTAAAAAAAAAAAAAACCC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCt < 1:762024/230‑1 (MQ=255) gagtccAGTGTAGGG‑GCTGTT‑GCTGGCGTAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAACCGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTg < 1:1026485/245‑1 (MQ=255) attaccattttgggtcgtttt‑ACTGTCGTAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTg < 1:398722/231‑1 (MQ=255) aGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTc > 1:652644/1‑251 (MQ=255) gggggggttt‑ACTGTCGTAAAAAAAAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTc < 1:154476/243‑1 (MQ=255) gT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCgg > 2:510000/1‑251 (MQ=255) gcgttt‑ACTGTCGAAAAAAACAAAAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGaa < 1:58446/247‑1 (MQ=255) tt‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGt > 1:1109058/1‑251 (MQ=255) t‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTc > 1:407013/1‑251 (MQ=255) cgttCGTAAAAAAAAAAAAAACCC‑GCTATGGCAACATTGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATGAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCag < 1:374166/248‑1 (MQ=255) gTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCag > 2:1034607/1‑249 (MQ=255) tggtaaaaaaCAAAAAAAGCC‑GCCAGTGCAACAATGGCGCAATGCGGATGAAGCCCATATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCagag < 2:833021/245‑1 (MQ=255) gAAAAACAATAAAAACC‑GCCATTGAAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAGCgtgt > 2:816272/1‑251 (MQ=255) aaaaCAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAGCGTGTTg > 1:820432/1‑251 (MQ=255) | AAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTAT‑GCATGCTGTTGAAAAA‑GAGGAAGATACTG‑ACTAACTCTAAAGTGGTATTTTACATGCACTTACAA‑TTG‑ATTAAAGACAACA‑TTCA‑CA‑GTGTGGTTATTTGTTACACATAGGGGCGAGCAATG‑TCATGACAGTGTAGGT‑GCGGTT‑ACTGTCGTGAAAAACAATAAAAACC‑GCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTATGACAAGGATAAAAATAAACGCACGCCGTATCTTCAGCTTATTGATTCCTTTTTTCTTTTTCACTTCTGTTCACGCTGAACAAACGGCTGCTCCCGCAAAACCTGTAACTGTGGAAGCGAAGAATGAAACCTTTGCCCCGCAGCATCCCGATCAATATCTCTCCTGGAAAGCCACCTCGGAACAGTCAGAGCGTGTTG > NC_000913/4287472‑4287962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |