| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,483,254 | 0 | G | A | 31.0% | 105.6 / 20.8 | 58 | S29L (TCA→TTA) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| Reads supporting (aligned to +/- strand): ref base G (29/11); new base A (0/18); total (29/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.54e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTG > NC_000913/2483006‑2483504 | ataGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGa > 1:1137002/1‑250 (MQ=255) gTTTATTCGTTTGCCGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAAc < 2:1010192/251‑1 (MQ=255) gTTTATTCGTTTGCCGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAAc > 1:454284/1‑251 (MQ=255) tCGTTTGCCGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTGTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑GTGACC‑AATAGGCATAGGCACC‑TGAAAACGCaat < 2:985906/250‑1 (MQ=255) ccGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAAtaaataaa > 1:175363/1‑250 (MQ=255) atatTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGc < 2:741647/251‑1 (MQ=255) atTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCa < 1:15538/251‑1 (MQ=255) ccAGATTATTTTCAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATaa > 1:893154/1‑250 (MQ=255) attTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGt > 1:1120063/1‑251 (MQ=255) atggAGTGCGATAGTGGCATCATTTTTATCCAGTGAAACAAAAATGTCCCCTTGTCGAAC‑TTAGTTCGTATTTTTATGATAAACGACAGTGACCCTACCTG‑AGACTTGT‑GCAGAAATGGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCCCC‑GGAAACCGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGt < 1:1184568/248‑1 (MQ=255) gAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTAGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGtt > 1:661648/1‑249 (MQ=255) aGTGCGATAGCGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGtt > 2:302885/1‑248 (MQ=255) gTGGCTTCATTTTTATCCAGAGAAACAAAAATGTCACCTTGTCGAAC‑TTATTTCTTTTTTTTATAATTAACGCCAGTGACCCTCCCGG‑AGATTTGT‑GCAAAAATTGGATCTGCATCCCCCGTGACATAGCCGTCATCTTTACTAATCTTTTCTTCTA‑TTCCAATCGCCA‑AATAGACATAGCCCCC‑AAAAACCCCAATAAAAAAAACTCCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGtttttt < 1:1096298/251‑1 (MQ=255) ggaaTCAGTTTTATACAATGAAACAAAAAGGTCACCTTTGCGAAC‑GTAGTTCTTATTTTTATGATAAACGACATTGACATGCCCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATCCCCCGTGACAAAGGCGTAATCTGTACTAATCATTTCTTAAAATTCCA‑TTGCCC‑AAAAGAAAAAGGCACA‑TAAAAACTAAATAAAAAAATCTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTAt < 2:12315/248‑1 (MQ=255) aTCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTg > 1:360154/1‑251 (MQ=255) aGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAAt > 1:823944/1‑251 (MQ=255) tATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATc > 2:550585/1‑251 (MQ=255) aTCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCt > 2:60596/1‑251 (MQ=255) aTCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCt > 1:60717/1‑251 (MQ=255) aTCCAGTAAAACTAAAATTTCACTTTGTCGAAC‑GTAGTTCGTATCTTTATGTTTACCGACAGTACCACTCCCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATCGGCCTCTTCTGTTCTAACCATTTCTTCTAATCCCA‑TAGCCC‑AATAGGCATAGGCCCC‑TAAAACCGCAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATc < 1:135337/250‑1 (MQ=255) tCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTg > 2:775701/1‑251 (MQ=255) aGTGAAACTAAAATTTCACCTTGTGGAAC‑TTGTTTCGTTTTTTTATTATTACCACCAGTGACTCTCCCTG‑ATACTTGT‑GCAGAAATTGGTTCTTCATTCCCCGTGACTAAGGCTTCATTTGTCCAAATCATTTCTT‑TAAATCCA‑ATGCCCCAATAGGTAAAGACACG‑GAAAAACGAAATAAATAAATTTCCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTc < 2:139000/251‑1 (MQ=255) aaaCTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCATGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATaa > 1:1078244/1‑196 (MQ=255) atAAAATGCCACCTTGTCTACC‑GTAGTTCATTTTTTTATGATTAACTACATGGACTCTCCCT‑‑AAAATTGTTGCAAAAATTGGATCTGCATCCCCTGGGACATGGGCTTCATTTGAACTAAGCATGTTTTCTAATCCCA‑TGGCCC‑AA‑AAGCCTGAGCACCCTAAAAACGAAATAAATAAAACAACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACtatt < 1:1176947/250‑1 (MQ=255) aTGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTCCCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTAtctc > 1:156794/1‑251 (MQ=255) tGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTAtctct > 2:791820/1‑251 (MQ=255) gtccccTTGTCGAAT‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTTT‑GAATAAATTGGATCTGCATCCCCCGTAACATAGGCGTCATCTGTACTAATCATGTCTTATAATTCCA‑TGGACC‑AATAGACAAAGGCACC‑TAAAAACGCAAAAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTAtctct < 2:893154/246‑1 (MQ=255) ccACCTTGACGAACTGT‑GTTCGTATTTTAATGATTAACGACAGTACCACTACGTG‑AGACTTGT‑GAAGAAATTGGGTCTGCATTCCCCGTGAAATAGGCGTCATCTGTACTAATCATGTCTTATAATTCCA‑TTGACA‑AATAGCCAAGGGCCCC‑TGAAAACGCAATAAAAAAAATTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCa < 1:178334/250‑1 (MQ=255) gTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTtctc > 1:1083183/1‑250 (MQ=255) gAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCAt > 2:1184102/1‑249 (MQ=255) gTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAAt > 1:508376/1‑251 (MQ=255) tATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGtttt > 2:307897/1‑194 (MQ=255) tATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAAACATGTCTTCTAATTCCA‑TTGACA‑AATGGGCATAGGCCCC‑GAAAAACGAAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGtttt < 1:307897/194‑1 (MQ=255) tttATGATTAACGACAGTGACACTCCCTG‑AGACTTGT‑GCAAAAATTGGATCTGCTTCCCCCGTTACATAGGCGTCATCTGTACAAATCATGTTTTCTAATTCCA‑TTGACC‑AATAGGCATAGCCACC‑TGAAAACGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaat < 1:620288/250‑1 (MQ=255) ttATGATTAACGACAGTGACCCTCCCTG‑AGACTTGT‑GCAAAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCCCC‑TGAAACCGAAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaatt < 1:791820/250‑1 (MQ=255) ttATGATTAACGACAGTGACACT‑CCTGGAGACTTGT‑GCAGAAATTGAATCGGCATTCCCCGTGACATAGGCGTTTTCTGTACAAATTATGTTTTCTAATGCCA‑TTGACC‑AAAAGATAGGGGCACC‑TGAAAACGCAATAAAAAAATCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaatt < 1:447731/250‑1 (MQ=255) tatgattacgaacattgaccctcccTG‑AGATTTGT‑GCAAAAATTGGATCTGCTTTCCCCGTAACAAGGGTGTCATCTTTACTAATCATGTCTTATAATTCCA‑TAGACC‑AAAAGGAAAAGACACC‑TAAAAACGCAATAAAAAAAACTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaattg < 2:360154/227‑1 (MQ=255) aaTTAACGACAGGGACACTCCCTT‑GGTCTTGT‑GCAAAAATGGGATCGGCTTCCCCCGGGTCATGGGCTTTATCTGTACTAATCATGTCTTCAAATCCCA‑TGTCCC‑AAAAGGCATAGCAACC‑TAAAAGCGGAATAAAAAAAACTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCTCTATTATCTCTCATTTCTCATAGATGAAATTTAtgaattgaat < 1:1085399/249‑1 (MQ=255) tGACACTACCTG‑AGACCTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGAAC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattc > 1:384116/1‑251 (MQ=255) tACCTG‑AGACTTGT‑GCAGATATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATaaa > 1:997143/1‑137 (MQ=255) aCCTG‑AGACTGGG‑GCAGAAATTGGATCCGCATCCCCGGTGACATAGGCCTCATCTGTACTAACCATGTCTTTTAATTCTA‑TGGACA‑AAGAGGCAAAGCCCCC‑TAAAAACGCAAAAAAAAAAACTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAgtcttc < 1:775701/251‑1 (MQ=255) cTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGtt > 1:775873/1‑177 (MQ=255) tgt‑gCAAAATTTGGTTCTTCATTCCCCGTGAAATAGGCGTATTCTGTACTAATAATTTCTTCAAATACCA‑TTGACA‑AATAGACAAAGGCAAC‑TAAAACCGAAAAAAATAAACTTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTTAATGAAAAGAGCATTCATTCTTCATATCAAac < 2:661648/250‑1 (MQ=255) cAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGt > 2:1070457/1‑251 (MQ=255) atctccttcccccGTGACAGAGGCGTCATTTGTACTAATCATGTCTTCTAATCCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGAAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt < 2:60717/241‑1 (MQ=255) tGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGcac > 1:452052/1‑251 (MQ=255) gcttcccccGTGACAGAGGCGTCATTTGTACTAATCTTGTTTTCTAATCCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGtt < 1:698658/241‑1 (MQ=255) gCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCCCC‑TAAAAACGCAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGc < 1:175301/248‑1 (MQ=255) gCATCCCCCGTGACATAGGCGTCATCTGTCAAAATAATTTCTCCAAATTCCA‑TTGACC‑AATAGGAAAAGGCACC‑TAAAAACGAAAAAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGc < 2:1120063/248‑1 (MQ=255) ccGTGACAAGGGCTTCATCTGCACTAATCATGTCTTCTATTACCA‑TTGCCC‑AATAGGCATAGTCACC‑TAAAAACGCAAAAAATAAATCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATccc < 1:505181/251‑1 (MQ=255) gtcatttttacaactcatttcatatAATTCCA‑TTGACA‑AATAGGCATAGGCACT‑TAAAAACGTAATAAAAAAATCTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAg < 2:175363/227‑1 (MQ=255) gTCATCTGAACAAATCATTTCTTTAAATTCCA‑TTGACC‑AATAGACATAGGCACC‑TAAAACCGAAAAAAAAAAATCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAg < 2:320205/251‑1 (MQ=255) ccA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGAATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAaac > 2:129008/1‑251 (MQ=255) cc‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACag > 1:1126370/1‑249 (MQ=255) aaTAGGAAAAGGCACC‑TAAAAACGCAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGa < 1:1192460/251‑1 (MQ=255) ggcaCC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTg > 2:771189/1‑251 (MQ=255) caCC‑TAAAAACGCAAAAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGc < 1:570374/251‑1 (MQ=255) c‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCttt > 1:899106/1‑251 (MQ=255) gAAAACGCAATAAATAAAACTACCGCCAATAAAAAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCACAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTg > 2:964428/1‑251 (MQ=255) | ATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAAC‑GTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTG‑AGACTTGT‑GCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCA‑TTGACC‑AATAGGCATAGGCACC‑TGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTG > NC_000913/2483006‑2483504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |