| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,196,867 | Δ27,041 bp | [ymfD]–ymgJ | 37 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, ymfN, ymfR, beeE, ymfQ, ycfK, tfaP, tfaE, pinE, mcrA, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ymgD, ymgG, ymgI, ymgJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196867 | 1223907 | 27041 | 21 [0] | [1] 22 | [ymfD]–ymgJ | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ymgD,ymgG,ymgI,ymgJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1196866 | 0 (0.000) | 21 (0.430) | 16/488 | 1.6 | 100% | intergenic (+84/+1) | C0293/ymfD | small regulatory RNA C0293/putative SAM‑dependent methyltransferase YmfD |
| ? | NC_000913 | 1223908 = | 0 (0.000) | intergenic (+459/+371) | ymgJ/minE | uncharacterized protein YmgJ/Z‑ring positioning protein MinE | |||||
GGAACGGTATGGAAATGAACCCTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAGGTGAATAATGACGGTAATTTCGTCAATGATTTGTCGGGCAGACGTGGAATATACCAGGCAGCTATTAAAGCCTCATTCAGCAGTACGTTTAGCGGACATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTA > NC_000913/1223658‑1224143 | aagttagttatgtattcactgttattaggacaattatgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtac > 2:340875‑M2/251‑251 (MQ=255) aggacaatgattaattacccctccttacacccgctcaaatattgttaaattgccggatttgtatcaactcctcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggcccctgcacatacatccttagtactgagactgtttagcctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGgc < 2:117450‑M2/27‑1 (MQ=255) atgaattaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTc < 1:340875‑M2/36‑1 (MQ=255) attaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGttt > 1:202412‑M2/212‑251 (MQ=255) attaccactccttacacccgctcaaatattgttaaattgccggttttgtatcaactactcacccgggactcgccaggggacagcaaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGttt > 1:207804‑M2/212‑251 (MQ=255) actcgctcaaatattgttaaatttccggttttgtatcaactactcacccgggactcgccaggggaccgccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTCAACTACGCTTCAGCGCAGTTTTCGTTTACAGGATGTTGaa > 2:373889‑M2/197‑249 (MQ=255) tcttgttaaattgcaggctttgtatcaactactcacccgggactcgccaggggacagacaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattaatgtagtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTg > 2:146605‑M2/186‑251 (MQ=255) cgccgggtttgtatcaattactcacccgggactcgccaggggacagccaacaggcattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCGGTTTTCGTTTACAGGGTGTTGAATGGGAAAATTCTCGGGCaaaaaa > 2:32228‑M2/175‑250 (MQ=255) aggggacagccaacagccattgggtgcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGga < 1:31274‑M2/114‑1 (MQ=255) aggcattgtgtgcaatcaccttagcgttcagatccagtcggaatgtaaaaaaggccgcgagcgcggccccttcacagacatctttagtactgagcctgtttaacctagggaattattgccgtaCCATCAACGATTAAACTGCTCTCCGGCGCAGTTTTCGTTTACAGGATGTTGAACGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACTGCGGGAAACCTCATCCTATGGGAGAACAATGaataat < 2:140653‑M2/128‑1 (MQ=255) attgggtgcaatcaccttagcgttcagttacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGaaa < 1:231299‑M2/132‑1 (MQ=255) gcaatcaccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCgg < 1:384301‑M2/138‑1 (MQ=255) aatctccttggcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttaacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGt < 2:176370‑M2/141‑1 (MQ=255) cccttagcgttcaggtacatgcggaatgtaaaaaaggccgcgagcgcggccccttcacatacatctttagtacggagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTatc < 2:280732‑M2/145‑1 (MQ=255) acatgcggaatgtaaaaaaggccgcgagcgccgccccttcacattcatcgatagtactgagactgtttaacctaggtaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCTTTTACAGGATTTTGAAAGGGAAAATTCTGGGGCAAAAAAATCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGATTAATGAAATTGCGGGGTTATCATCTCCCAGTTTATc < 2:413416‑M2/160‑1 (MQ=255) gagcgcggccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATAAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTc < 2:324096‑M2/186‑1 (MQ=255) gccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTc < 2:336230‑M2/24‑1 (MQ=255) gccccttcacatacatctttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTc > 1:336230‑M2/59‑82 (MQ=255) cgcttctaaaacatctttagtacatagactgtttaacctagggaattattatcgtaCCATCACCGATTAAACTGCTCTTCGGCGCAGTTTTCTTTTTCAGGATGTTTAAAGGAAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCAGCCTATGGGAGAACAATGAATAATGAAATTGCTGGGTTATCATCTCCCAGTATATCCATACTAACACTAAGGTTAtttactcaaaaaggca < 2:231072‑M2/195‑8 (MQ=255) ttagtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGTAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACAttttgt < 1:379053‑M2/207‑1 (MQ=255) gtactgagactgtttaacctagggaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGc < 1:120741‑M2/214‑1 (MQ=255) gaattattgtcgtaCCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAAACTCATCCTCAGGGGGGACAAAGAATAAAGAAATTTCCGGGGTATTATCTCCCCGGATTTACCTACTAACAAAAAGGGTGTTTACTCCACCAAGCATAAAAATTTTTTTTTTTGTGGGGGGACAGCCCTAAgggggc > 1:137836/14‑246 (MQ=255) | GGAACGGTATGGAAATGAACCCTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAGGTGAATAATGACGGTAATTTCGTCAATGATTTGTCGGGCAGACGTGGAATATACCAGGCAGCTATTAAAGCCTCATTCAGCAGTACGTTTAGCGGACATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCAGTTACGGCGGGAAACCTCATCCTATGGGAGAACAATGAATAATGAAATTGCGGGGTTATCATCTCCCAGTATATCCATACTAACAATAAGGTTATTTACTCAACCAGGCATAAACATTTTGTTTTGTGCGTGGGAACAGCCTTAAGGTGTA > NC_000913/1223658‑1224143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |