| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,522 | Δ12,535 bp | mdtP–alsB | mdtP, mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299522 | 4312056 | 12535 | 34 [0] | [0] 34 | mdtP–alsB | mdtP,mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299521 | 0 (0.000) | 34 (0.690) | 29/490 | 0.5 | 100% | intergenic (‑155/+43) | fdhF/mdtP | formate dehydrogenase H/putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4312057 = | 0 (0.000) | intergenic (‑15/+44) | alsB/alsR | D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR | |||||
CCGCCCGGACGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGACGAAACGAAATACCGCGTGACAGCCATCACGCGGCAGACATTTTATTTTTTCTCGACGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTG > NC_000913/4299279‑4299768 | ccGCCCGGACGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACGCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaagg < 2:18963‑M1/250‑8 (MQ=255) gATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaact > 1:53019‑M1/1‑233 (MQ=255) ttATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggc > 1:99565‑M1/1‑223 (MQ=255) gacCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattac < 1:294865‑M1/251‑37 (MQ=255) cAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaacgccgcgatggcggaattacctttttcttatttcag < 2:127398‑M1/251‑53 (MQ=255) gcgcAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctg < 1:111513‑M1/250‑61 (MQ=255) gcgcAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctg < 1:1723‑M1/250‑61 (MQ=255) tttttCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccg < 2:52569‑M1/249‑87 (MQ=255) tttttCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCGCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACGCTGACGAAAAACAGGCTGTCGGCTGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttattgcagcgcgcctgttcagaataaatcaacaagtgcgccg < 2:100230‑M1/249‑87 (MQ=255) cagcggtCTCGCTACAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTTGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttt < 2:87473‑M1/247‑93 (MQ=255) cATCGGTCTGGCTCCAGGTAATCAAATCACGCAAACGCGCTCTCGACTACAGTATGCATCTATTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggtgacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccgattttt < 2:103515‑M1/250‑93 (MQ=255) ctcGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAATCAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttcca > 1:197250‑M1/1‑151 (MQ=255) ctcGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAATCAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttcca < 2:197250‑M1/247‑97 (MQ=255) gTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATCTTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaccaattgcgccggttttttccatcttaatattagc > 2:303194‑M1/1‑142 (MQ=255) atcaaatcaCGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgt < 1:269824‑M1/251‑114 (MQ=255) aaatcaCGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttca < 1:141692‑M1/251‑117 (MQ=255) gCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTCATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttg > 1:102957‑M1/1‑128 (MQ=255) aCGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctg > 1:220831‑M1/1‑124 (MQ=255) cTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagac > 2:149839‑M1/1‑112 (MQ=255) cacagttgatgtggggtCATTCCCGGATATTACGGGCACTATTTAGTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggatagtaactccgcgatggcggaagtacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggtgttttccatattaatattagctttttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggtt < 2:151644‑M1/243‑162 (MQ=255) ttATGTGGGGTCATTACCTGATATTACGGGCCCTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTACGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggcattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattactattagcttgttcactgttgagctggccgacagagacaaaaaacgcgtcaagcaaggctggttgt > 2:75655‑M1/1‑84 (MQ=255) gggTCATTACCTGATATGACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattc < 2:83060‑M1/251‑175 (MQ=255) cATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttg < 1:262554‑M1/250‑178 (MQ=255) atatTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcatt < 1:149839‑M1/251‑188 (MQ=255) ggCACTATTTATTCAACACTCTGACGGAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgttggcgggattccctttttcttatttcaacgcgcctggtgaaaagaaatcaacaattgcgccggctttttccatattaatattagcttgttcaatgttgagctggtcgacagagacaaaataagcgtacagccaggttgggtgtaatattcttgccgaggcattacgacct > 2:238158‑M1/1‑56 (MQ=255) aaaaaCAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctggtg > 1:273393‑M1/1‑30 (MQ=255) aaCAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctgttgagca > 2:395741‑M1/1‑27 (MQ=255) aCAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctggtgagcaa > 2:308749‑M1/1‑26 (MQ=255) cAGGCTGTCGTCAGTTTTGACGTGAggtaatggtacagtaactccgagatggcggaattacctttttcttatgtcagcgcgcctggtgagaagaaatcaacaattgcgccggtttttgccagattaatattagcgggttcaatgttgagctgggcgacagtgacaaaaaaagcggccagcaaggttggttgtaagatgcttgccgaggcattacgacttaataacggcgtttccggggctgttgagcaaat < 2:134858‑M1/251‑227 (MQ=255) aGGCTGTCGTCGGTTTTGACGTGAggtaaggggccaggaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcacggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctggtgagcaaat > 2:246136‑M1/1‑24 (MQ=255) aGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgccctaataacggcgtttccggggctggtgagcaaat > 1:430425‑M1/1‑24 (MQ=255) gtcAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctggtgagcaaataatatgatc > 1:102236‑M1/1‑16 (MQ=255) tttGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctggtgagcaaataatatgatcggcca < 1:308749‑M1/250‑241 (MQ=255) gTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctggtgagcaaataatatgatcggccagtttcgc > 2:291562‑M1/1‑4 (MQ=255) | CCGCCCGGACGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGACGAAACGAAATACCGCGTGACAGCCATCACGCGGCAGACATTTTATTTTTTCTCGACGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTG > NC_000913/4299279‑4299768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |