| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 96.6% | 213.9 / ‑0.6 | 59 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (31/26); total (33/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑C‑C‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCG > NC_000913/3560209‑3560685 | tcttTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTACCCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑cgc > 2:42743/1‑247 (MQ=255) tACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGagc > 2:356295/1‑248 (MQ=255) aCCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATc > 2:273205/1‑249 (MQ=255) catcGTGTTAGCAACGGGGAGTTTGTGGGTGACAATGCGCAAATTG‑CTGTGATGGAGCAGTGCGTGCGCGACC‑GCTTCGGGCGTGGTGCC‑AATATCGATAAACAGCGTCGAGCGTTTGGGGATTTGCTCC‑GCCCCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGCCATCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCATGttt < 1:248821/247‑1 (MQ=255) cAACGTGTTAGCAACGTTGAGATTGTTGGTGAAAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGCTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGtttt > 1:162311/1‑251 (MQ=255) ttAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGc > 1:233286/1‑251 (MQ=255) gCAACGTTGAGATTGTTGGTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGcc > 2:425104/1‑249 (MQ=255) cAACGTTGAGATTGTTGGTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGc > 1:245770/1‑251 (MQ=255) ggtGAGACTGTTGGAGCCAATGCCCAAATTG‑ATGCGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAGCAGCGTCGAGCCATTGGGGCTTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCCTTTTCTGCGGCCTGGGAGGCAGTGCGATCGTGCCACGGCGTGTTAACACAACTGGAAGGAAGCGACCG‑ACCGCAATGAAGG‑C‑CCAGCATCAGGTGTTGCgccgcccgcccat > 2:174644/3‑244 (MQ=255) agaTTGTGGGTGACATTGCG‑AAATTGGCTGTGATTGAGCAGTGCGTGCGGTACC‑GCTTCCGGCGTGGTGCG‑GATTTCGAAAAACGGCGTCGGGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAg < 1:18464/251‑1 (MQ=255) ggTGACAAGGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTCCC‑GCTGCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGACCCATTGGGGATTTGCTCC‑GCCCCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGACCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcggc < 1:215393/251‑1 (MQ=255) gTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcggcg > 1:424159/1‑251 (MQ=255) gtgaaatggcgaaattggttgggATTGAGCAGGGCGTGCGCTACC‑GCTTCCGGGGTGTTGCG‑TATATCGAAAAACGGCGTCGTGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcggcg < 2:343891/229‑1 (MQ=255) aCAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAt > 1:226469/1‑251 (MQ=255) aaTTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGACCTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCggg > 2:299362/1‑251 (MQ=255) aaTTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCggg > 2:191574/1‑251 (MQ=255) gtgtgATTGAGAATGGCGTGCGCTACC‑GCTTCCGGCGGGGGGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGGGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGAc < 1:114072/250‑1 (MQ=255) gATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACgg > 1:397620/1‑249 (MQ=255) gAGCGGTGCGTGC‑CTACCCGCTTCCGGGGTGTTGCC‑AATATCAAAAAACAGCGTGGAGCCATGGGGGGTTTGCTCC‑GCCTCGTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCGTGCGATCGGGCCACGGCGTGTTAACGGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAAt < 1:359324/251‑1 (MQ=255) gAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGcc > 2:20873/1‑205 (MQ=255) gAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAAt > 2:100109/1‑251 (MQ=255) gAGCAGTGCGTCCGCTCCC‑GCTCCCGGCGTGGTGCC‑GATATGGATAACCAGCGTCGAGCCTTTGGGGATTTCCTCC‑GCCTCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGcc < 1:20873/205‑1 (MQ=255) aGTGCGTGAGCTACA‑GCTTCCGGAGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCCCATTGAGGTCGCGGCGAATAGTCTGCGGGCGGCCGGAGAAATGctc > 1:198109/1‑251 (MQ=255) gcgcgccc‑GCTTCCGGCGTGGTGCC‑GATATCGATAACCAGCGCCGAGCCATGGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGc < 1:358658/245‑1 (MQ=255) tACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt > 2:235373/1‑251 (MQ=255) gttccgggggtggtgCC‑GATATCGATAAACAGCGTCGACCCTTGGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGt < 1:223856/242‑1 (MQ=255) ccTTCCGGCGTG‑TGCCCGTTTTCGATAAACAGCGGCGACCCATGGGGGTTTTGCCCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCCCGGCGTGTTACCCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGt < 1:261198/250‑1 (MQ=255) cttaaggCGTGATGCG‑GATATCGATAAACAGCGACGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGAGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGCTCGTGCCACGGCGTGTTACCCGAACTGGCAGGCAGCG‑CCGCACCACCATGATGGAG‑C‑AGGATCAGCTTTTGCTCCGCCAGCTCTTTGAGGTCGCGGCGAATAAGCTGCGGGCCGACGGAGAAATACTCTACTAACTCTTCggc > 2:300391/6‑249 (MQ=255) cGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACAt > 1:404202/1‑251 (MQ=255) cc‑GATATCGATAAACGGCGTCGAGCCATGGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctg < 1:112352/251‑1 (MQ=255) cc‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctg > 1:87591/1‑251 (MQ=255) gATATCAATAACCAGCGTCGACCCATTGGGGTTTTGCTCC‑GCCACTTTGCGGGGGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctgct < 1:313006/251‑1 (MQ=255) aTAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAc > 1:114356/1‑251 (MQ=255) aaaCAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAcc > 2:268489/1‑250 (MQ=255) cAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt > 1:411821/1‑251 (MQ=255) cAGCGTCGACCCATGGGGGATTTGCCCC‑GCCCTTTTGGGGGCGATGCGCTCTTTTTCTTCGGTCGGGGGGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 2:92250/251‑1 (MQ=255) cGTCGGGCCATTGGGTATTTGCCCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa < 1:395490/251‑1 (MQ=255) gCCATTGGGGTTTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAc < 1:19537/251‑1 (MQ=255) aTTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGCTGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGt > 1:358868/1‑251 (MQ=255) gtggggtttggcccccgccgttgtGCGGGTGATGCGCTCTTTTTTTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATAcc < 2:405235/226‑1 (MQ=255) gtgggATTTTCTCCCGCCCCTTGGGGGGCGATGCGTTTTTTTTCGTGGGTCGGGGTGGCCTTGGGATCGGGCCACGGGGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGtt < 2:157973/249‑1 (MQ=255) cccc‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTtgtg < 1:268489/249‑1 (MQ=255) cTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc > 2:69811/1‑251 (MQ=255) tttGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc > 2:370094/1‑250 (MQ=255) gCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCAttt > 1:262418/1‑251 (MQ=255) ggcgcTCTTTTTCTGCGGTCGGGGTGGCCTTGCGACCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCCCCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATcc < 2:300692/250‑1 (MQ=255) ctctTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTgg > 1:215177/1‑251 (MQ=255) ggCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCgcgc > 2:144936/1‑250 (MQ=255) aTCGTGCCACGGCGTGTTAACCGAACGGGAAGGCGGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGaa < 2:222747/251‑1 (MQ=255) tCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt > 1:204712/1‑251 (MQ=255) gTGCCACGGCGCGTTAACCGAACTGTAAGGCAGCG‑CCCCACCGCCATGATGG‑CGC‑AGGATCAGGTCTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTCACCAGTTCGATAATACCGTTGTGACGTTGTGCTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATc > 1:114326/1‑250 (MQ=255) gggCGTTTTAACAGAACGGGAGGGCGGCG‑CCGCTCCGCCGTGTTGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaaa < 2:389143/250‑1 (MQ=255) gtTAACCGAACTGGAAGGCAGCG‑ACGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATc < 1:31578/251‑1 (MQ=255) acccGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGc < 1:146296/248‑1 (MQ=255) aaCTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATACCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAcc > 1:416777/1‑251 (MQ=255) ggAAGGCGGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACg < 2:245770/251‑1 (MQ=255) ggAAGGCAGCG‑CCGCACCGCCATGCTGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACg > 1:398725/1‑251 (MQ=255) gggCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCt < 1:34296/250‑1 (MQ=255) aGGCAGCG‑CCGCACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCt < 1:345789/251‑1 (MQ=255) cg‑ccgcACCGCCATGATGG‑CGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCg > 2:408918/1‑251 (MQ=255) | TCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTG‑CTGTGATTGAGCAGTGCGTGCGCTACC‑GCTTCCGGCGTGGTGCC‑GATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCC‑GCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCG‑CCGCACCGCCATGATGG‑C‑C‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCG > NC_000913/3560209‑3560685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |