New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2407180 =	0 (0.000)	46 (0.870)	45/484	0.2	100%	intergenic (‑539/‑381)	lrhA/alaA	DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA
	?	NC_000913	3583428 =	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

TGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAACCTTTTATTTATAAGGGTCATTGCGAATTATCTGATGCAAAGTTATGTTATGTTAGGCAAAGTAATCTTCTATTATTAATAAGCACATCAAAACCTTTTTGAATATTAAATAATAATTAATTAGCATCATCCTCATTCATTAATTCCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGTT  >  NC_000913/2406934‑2407421                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                  acgccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccacccagtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCtt                                                                                                                                                                                                                                               <  1:294965‑M1/5‑1 (MQ=255) acgccattcatggccatatcaatgattgtctggtgcgtacctggttgagaagcggtgtaagtgaactgcagttgccaggttttacggcagtgagagcagagatagcgctgatgtccggcggggctggtgccgttacgcaccaccccgtcaggagctgaacaggagggacagcttatagaaacagaagccgctggagcaccttaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCtt                                                                                                                                                                                                                                               >  1:469717‑M1/247‑251 (MQ=255)        tcatggccaaatcaaggattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAAt                                                                                                                                                                                                                                         >  2:352696‑M1/240‑250 (MQ=255)            ggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGttt                                                                                                                                                                                                                                    >  2:336554‑M1/236‑251 (MQ=255)             gccgtatcaatgattttcttgtgcttaccgggttgagatgcggtgtaagtgaactgcagttgccatgttttactgcagagagagcagagatagcgctgatgtccggccgtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccaacatacactaaatcagtaatttggcagcatcgccCGCTTAACAATAGTTTc                                                                                                                                                                                                                                   >  2:73037‑M1/235‑251 (MQ=255)                           tttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGccccc                                                                                                                                                                                                                      >  2:152999‑M1/221‑250 (MQ=255)                                   gcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagtcggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGac                                                                                                                                                                                                              <  1:358230‑M1/38‑1 (MQ=255)                                                       gtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAg                                                                                                                                                                                         >  1:155209‑M1/193‑251 (MQ=255)                                                        tgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggaccgctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCCCGCAGt                                                                                                                                                                                        <  2:192254‑M1/60‑1 (MQ=255)                                                              ggaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagtcggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAAct                                                                                                                                                                                  >  2:358230‑M1/186‑251 (MQ=255)                                                               gaactgcagttgccatgttttccggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccggtacgcaccaccccgtcagtagctgaacaggaggggcagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccCGCTTAACAATAGCTTCACACATTGCCCCCATTGCGACACCTCGGAAATCATCACGCATTTACActc                                                                                                                                                                                 <  2:190542‑M1/67‑1 (MQ=255)                                                                    gcatttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCGTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTcc                                                                                                                                                                              >  1:320092‑M1/180‑249 (MQ=255)                                                                                 tttacggcagtgagagcagagatagcgctgatgtcccgcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAatat                                                                                                                                                               <  2:399653‑M1/85‑1 (MQ=255)                                                                                    acggcagtgagagcagagatagcgctgatctccggcggtgcttttgccgttacgctcccccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCAATGCGACACCTCGGAAATCATGACGCATTTAAACTCTCCGTAAGGAGGAAATatcat                                                                                                                                                            >  2:29928‑M1/164‑251 (MQ=255)                                                                                        cagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATatcatcatc                                                                                                                                                        >  1:192254‑M1/160‑251 (MQ=255)                                                                                            gagagcagagctagcgcggatggccggcggtgcttttgcagttacgcacccccccgtcagtagctgaacaggagggacagctgacagaaacagaagccacgggagcacatcaaaaaccccatcatacactaaatcagtaagtgggcagcatcaccCGCGTAACAATAGTTTCCCGCCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCAtcgcgg                                                                                                                                                    >  2:336089‑M1/156‑250 (MQ=255)                                                                                             agagcagagatagcgctgatatccggcggtgcttttgccgttacgcacctccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATAGCAGCATCGCGtt                                                                                                                                                   >  1:170041‑M1/155‑251 (MQ=255)                                                                                              gagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGttt                                                                                                                                                  >  1:473853‑M1/154‑251 (MQ=255)                                                                                                agcagagatagcgctgatgtccggcggtgcttttgccgtacgcaccaccccgtcagtagctgaacaggagggaccgctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTg                                                                                                                                                                                                                  <  2:409088‑M1/34‑1 (MQ=255)                                                                                                agcagagatagcgctgatgtccggcggtgcttttgccgtacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatctccCGCTTAACAATAGTTTCACACCGTGCCCCCATTg                                                                                                                                                                                                                  >  1:409088‑M1/152‑185 (MQ=255)                                                                                                  agagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCAtt                                                                                                                                              <  1:363283‑M1/102‑1 (MQ=255)                                                                                                    agatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCAtt                                                                                                                                              <  2:372102‑M1/102‑1 (MQ=255)                                                                                                     gatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGt                                                                                                                                           >  1:476602‑M1/147‑251 (MQ=255)                                                                                                      atagcgctgatgtccggcggtgcttttgccgttacgcacccccccgtcagtagctgaacaggagggacagctgatcgaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTg                                                                                                                                          <  2:178092‑M1/106‑1 (MQ=255)                                                                                                         gcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATGAGTGAAt                                                                                                                                       >  1:372102‑M1/143‑251 (MQ=255)                                                                                                                 gtccggcggggcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagcaacagaagccactggagcacctcaaaaacaccatcatacactaaatccgtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGCAATCATCCCGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAAt                                                                                                                               <  2:123582‑M1/117‑1 (MQ=255)                                                                                                                         gtgctgttgccgttacgcaccaccccgtcagcagctgaacaggaggtacacctaatagaaacagaagccacttgagcacctcaaaaacaccatcatacactaaatcagtaagttgtcagcatcaccCGCTTAACAATAGTTTTACACCTTCTCCCCAGTGCGACACCTCGGAAACCATCACGCAGTTAAACTCTCCGGAATGAGGAAATATCATCATCCCGTTTCATTACTGAATTCTTTAATGAGGCAtt                                                                                                                       >  2:23320‑M1/127‑251 (MQ=255)                                                                                                                            catgtgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcaccgcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTc                                                                                                                    >  2:363283‑M1/124‑251 (MQ=255)                                                                                                                                                                 aggagggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTCTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTAc                                                                                <  1:359370‑M1/164‑1 (MQ=255)                                                                                                                                                                                    aacagaagccactggagcacctcaaaaacaccatcataccctaactcagtacgttggcagcctcaccCGCTTAACAATAGTTTCACACCTTACCCCCATTGCGACACCTCGCACATCATCACGAAGTTAAACTCTCCGTACTGAGGAACTATCCTCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAAtt                                                            <  1:482188‑M1/184‑1 (MQ=255)                                                                                                                                                                                             cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACAAAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACtatat                                                    <  1:272829‑M1/192‑1 (MQ=255)                                                                                                                                                                                                   ggcacctcaaaaacagcatcatacactaaatcagtaagtcggcagcatcaccCGATTAACAATAGTTTCACACCCTGCCCTCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATTATGAAATTTCATCAGCGCGTTTCATTAGTGAATTCTTAAATGATGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATCACATTg                                             >  2:397428‑M1/53‑251 (MQ=255)                                                                                                                                                                                                   agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTg                                             <  2:174658‑M1/199‑1 (MQ=255)                                                                                                                                                                                                    gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACGTACAATTGAGAATCAGAACAATTCACTATATAACATTGc                                            >  2:293447‑M1/52‑251 (MQ=255)                                                                                                                                                                                                     cacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGc                                            <  1:211064‑M1/200‑1 (MQ=255)                                                                                                                                                                                                       cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCTTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATg                                         >  2:335048‑M1/49‑251 (MQ=255)                                                                                                                                                                                                                    atcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATac                             <  2:76295‑M1/215‑1 (MQ=255)                                                                                                                                                                                                                          cactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCat                      >  2:198463‑M1/30‑251 (MQ=255)                                                                                                                                                                                                                              aaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAg                                    >  2:84701‑M1/26‑233 (MQ=255)                                                                                                                                                                                                                              aaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAg                                    <  1:84701‑M1/208‑1 (MQ=255)                                                                                                                                                                                                                                atcagtaagttggcagcatcaccCGCTTCACAATAGTTTCACACCTTGCCCCCATTGCGCCCCCTCGGCAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCatat                               <  2:237752‑M1/213‑1 (MQ=255)                                                                                                                                                                                                                                atcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTGCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTGACAAGTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCatat                               >  1:237752‑M1/24‑236 (MQ=255)                                                                                                                                                                                                                                       agttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGa                                                                                                  <  1:47954‑M1/146‑1 (MQ=255)                                                                                                                                                                                                                                       agttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGa                                                                                                  >  2:47954‑M1/17‑162 (MQ=255)                                                                                                                                                                                                                                        gttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCattat        <  1:400356‑M1/236‑1 (MQ=255)                                                                                                                                                                                                                                              agcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTGTGTCATTATTAAGtt  >  2:211064‑M1/10‑251 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                  TGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAACCTTTTATTTATAAGGGTCATTGCGAATTATCTGATGCAAAGTTATGTTATGTTAGGCAAAGTAATCTTCTATTATTAATAAGCACATCAAAACCTTTTTGAATATTAAATAATAATTAATTAGCATCATCCTCATTCATTAATTCCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGTT  >  NC_000913/2406934‑2407421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.