| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 3,720,136 | IS3 (–) +3 bp :: +TCA | coding (88‑90/213 nt) | cspA → | cold shock protein CspA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315229 = | NA (NA) | 20 (0.380) +TCA |
19/480 | 1.1 | 100% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 3720136 = | 0 (0.000) | coding (88/213 nt) | cspA | cold shock protein CspA | |||||
| * | ? | NC_000913 | = 2171428 | NA (NA) | 51 (0.970) | 50/484 | 0.1 | 100% | noncoding (1258/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 3720138 | 0 (0.000) | coding (90/213 nt) | cspA | cold shock protein CspA | |||||
TATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGT > NC_000913/314999‑315465 | aatagattttatcacgcgatcgattatttatttcctgaaaacaaataacaccatccccgccaaatggcagggatcttagattctgtacttttaagaagagattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttatggatagcagagaagtgtacgcacactgaTCTTACCCAGCAATAGTGGa < 2:310430‑M1/20‑1 (MQ=255) attacgcgatcgattatttatttcctgaaaacaaatcaaaaaatccccgccaaatggcagggatcttagattctgtgcttttaagcagcgattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcttcccgagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:40666‑M1/30‑1 (MQ=255) tacgcgatcgattatttatttcctgaaaacaaataaaaaaatccccgccaaatggcagggatcttagattctgtgcttttaagcagagattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:272189‑M1/219‑250 (MQ=255) tacgcgatcgattatttatttcctgaaaacaaataaaaaaatccccgccaaatggcagggatcttagattctgtgcttttaagcagagattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:196329‑M1/33‑1 (MQ=255) atcgattatttatttcctgaaaacaaataaaaaaatccccgccaaatggcagggatcttagattctgtgcttttaagcagagattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:108317‑M1/38‑1 (MQ=255) ctgaaaacaaataaaaaaatccccgccaaatggcagggatcttagattctgtgcttttaagcagagattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 2:125743‑M1/55‑1 (MQ=255) aaatccccgccaaatggcagggatcttagattctgtgcttttaagcagagattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaa > 1:125743‑M1/181‑251 (MQ=255) caaatggcagggatcttagattctgtgcttttaagcagagattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACCCTCAGTCAGAGGTGAATCACATGACCAAAACAGTATCa < 2:397454‑M1/80‑1 (MQ=255) ggcagggatcttagagtctgtgcgtgtaagcagagattacaggctggttacgttaccagctgccgggccgttagcgccgctgtcgatggtgaaggacactttctgaccttcgtccagagagttgtaaccatcgttctggatagcagagaagtggacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCGAAGGGAGTAAACACTCAGTCAGAGGTGAATCACATGACAAAAACAGTATCAACCAGt > 2:40666‑M1/166‑251 (MQ=255) tagattctgtgcttttaagcagagattacaggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacacttgctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAGCCAGTAAAAAAc > 1:397454‑M1/155‑247 (MQ=255) caggctggttacgttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt < 1:356665‑M1/125‑1 (MQ=255) gttaccagctgccgggcctttagcgccgctttcgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGa < 1:277324‑M1/135‑1 (MQ=255) ggcctttagcgccgctttcgctggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCAt < 1:404636‑M1/151‑1 (MQ=255) cgatggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACATTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGc < 2:396378‑M1/169‑1 (MQ=255) cgatggtgaaggacactttctgaccttcgtccagagatttgtaaacaccgttctggatagcagacaagtgtacgaacactgaTCTTACCCAGCAATAGTGGCCACACGGCTAAGTGAGTGAACTCTCAGTCAGCGGTGACTCACATGACAACAACAGTATCAACCAGAAAAAAACCCCGTACACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGc < 1:287866‑M1/169‑1 (MQ=255) atggtgaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGccc < 1:251287‑M1/171‑1 (MQ=255) gaaggacactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGa < 1:318544‑M1/175‑1 (MQ=255) aaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGgcg < 1:335172‑M1/211‑1 (MQ=255) agcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAAt < 2:349575‑M1/227‑1 (MQ=255) gtacgaacactgaTCTTACCCAGCAATAGTTGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAGCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAAGCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGt > 1:485681‑M1/14‑250 (MQ=255) | TATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGT > NC_000913/314999‑315465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |