| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 96.4% | 203.8 / ‑1.2 | 56 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (21/33); total (23/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGG > NC_000913/3560207‑3560686 | cttcttTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑cgc > 1:292615/1‑249 (MQ=255) tcttTTACCATCAACGTGTAAGCAAGTTTGAAATTGTTGGTGAAAATGCGCAAATTGCGGTGAGTGAGCAGTGCGTGCGCTACCGCTTCCGTCTTTGGCCCAATATGAAAAAACGTCGTCGAGCCA‑TTGGGGATGTG‑CTCCGCCAGTTTCCGGGGGATGCGCTCTTTTTCTTCGGTCGGTGGGGCCTTGCGATCGGGCCACGGTGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑cg < 1:459546/248‑2 (MQ=255) ttGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCCGCTCAtt > 2:344260/1‑251 (MQ=255) gggaTTGTGGGGGACAATGCGCAAATTGCTGTGATTGGGAAGTGGGTGCGCTACCGCTCCGGGCGGGGGGCGGATATCGAGAAACGGGGGCGCGCCA‑GGGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTGCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCCGCTCCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGa < 1:216218/249‑1 (MQ=255) gagaTTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTg > 2:354053/1‑250 (MQ=255) ggaTTTTTGGTGACAATGCGCAAATTGCTGGGATGGAGCAGGGCGTGCGCTCCCGTTCCCGGGGGGGTGCCGTTGTCGTTAACCAGCGGCGAGCCA‑TGGGGGATTGG‑CCCCGCCACTGTTCGGGCGATGCGCTCTTTTTCGTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGGGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAg < 1:89264/250‑1 (MQ=255) gggTGACAATGCGCAAATTGCTGTGATTGAGCAGGGCGGGCGCTACCGCTTCCGGCGTGGTTCCGATATCGATAACCGGCGTCGGGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcgg < 1:372308/250‑1 (MQ=255) gggTGAAAATGGGCAAATTGCTGGTTTTGAGCGGGGCGTGCCCTCCCGTTTCGGGCGGGGTGCCGATATCGAAAAACAGCGTCG‑GCCAATTGGGGATTTC‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcgcg < 1:163200/249‑1 (MQ=255) cAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAAt > 2:240834/1‑250 (MQ=255) agggcgcAAATTGTTGTGATTGAGCGGGGCGTGCGCTCCCCCTTCCGGCGTGGTCCCGATACCGAAAACCAGCTTCGGGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAg < 1:394924/248‑1 (MQ=255) aTGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGt > 1:111271/1‑251 (MQ=255) gcAAATTGCTGTGATGGAGCAGTGCGTGCGCTCCCGCTCCGGGCGTGTGGCCGATATCGATAACCAGCGTGGAGCCT‑TTGGGGTTTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTGGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAGGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGTATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGTCGAATAGTCTGc < 1:164770/251‑1 (MQ=255) gCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTg > 1:239983/1‑250 (MQ=255) gtgggATTGAGCAGTGCGTGCGCTACCGCTCCGGGCGTGGTGCGGAAATCGATAAACAGCGTCGAGCCT‑TGGGGGTTTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGGCTGCGGGCTGAc < 1:167351/247‑1 (MQ=255) cTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGAc > 2:249139/1‑251 (MQ=255) gAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGCAGGCAGCGCCGCACCGCCATG‑ATGGAG‑CAGGATCAGGTTTTGCTCCGCAAGCCCATTGCGGTAGCGGCGACTAATCTGCGGGATGACGGAGAAAt > 1:180248/1‑251 (MQ=255) gtgcgCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAcc > 1:105972/1‑250 (MQ=255) ttCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAc > 2:246094/1‑251 (MQ=255) gggtggtgCCGATATCGAAAAACAGGGGCGAGCCT‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACa < 1:382377/249‑1 (MQ=255) cGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGCTGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCCGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACAt > 1:470042/1‑251 (MQ=255) gggggcctataccGATAACCGGCGTGGAGCCA‑TTGGGGTTTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATaa < 1:164474/239‑1 (MQ=255) gccgaaagagaaaaaccggcgtgAGCCA‑GTGGGGGTTTGTCTCCTCCATTTTGCGGGGGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATGGCGCCCCGGCGTGTTAACCGAACGGGAAGGCAGCCCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAAccc < 2:75793/229‑1 (MQ=255) cagcgccggtccA‑TTGGG‑ATTTGGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:354053/241‑1 (MQ=255) cggggcggggcatttgggtttttG‑CCCCGCCCCTTTGCGGGCGATGCGCTCTTTTTCTGCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTTTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:428756/231‑1 (MQ=255) cgtggAGCCA‑TTGGGTATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa < 1:17449/247‑1 (MQ=255) cGTCGAGCAA‑TTGGGGATTTG‑ATCAGCCCCTTTGCGGGCGATGCGCTCTTTTTATTCGGTATGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGCAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGCGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTATTCGGTCCTGACATACCCCTGCTGTTTAACCAGTTCg > 2:455280/1‑250 (MQ=255) gcgtagagtcattgggtgttgccaccGCCTCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCGTGCGAGCGTGCCCCGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGATAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTc < 2:350468/226‑1 (MQ=255) cGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTATGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGGAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGACATGCTCTCCAAGCTCTTCGGTACTGACCTCACCCTGCTGTTTAACCAGTTCGata > 2:217834/1‑250 (MQ=255) cgggcattgggggTTTTG‑CTCCGCCACTTGGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataa < 1:199146/242‑1 (MQ=255) cccGCCACTTTGCGGGCGTTGCTCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGGGCCCCGGCGTGTTACCCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTgtgt < 1:132616/250‑1 (MQ=255) ccACGTTGCGGGCGATGCGGTCTTTTTCGTCGGTCTGGGTGGCCTTGCGTGCGTGCCACGTCGTGTAAACCTCACTGGAGGGCAGCCCCGCACCGCCATG‑ATGG‑CGCTGGATCAGGTTTTGCGCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGATCTGACGGAGAAATGCTCTGCCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtttgt < 1:304441/251‑1 (MQ=255) cccTTTGCGGGCGATGCTCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGGGCCACGGCGTGTTACCCGAACGGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtttgtt < 1:367355/249‑1 (MQ=255) cTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc > 1:369367/1‑251 (MQ=255) tttGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTACCCGAACTGGTCGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATAAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGGTCGATAATACCGTTGTGACGTTGTGTTTGTTTct > 1:305102/1‑250 (MQ=255) tggcgtgcgagccgcTCTTTTCCGTCGGGCGGGGGGCCCTTGCGAGCTTGCCACGTCGTGTTAACCGAACGGGAACGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc < 1:468942/237‑1 (MQ=255) gggCGATGCGCTATTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGCCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCg > 2:252476/1‑224 (MQ=255) ggCGATGCGCTCTTTTTCTCCGGTCTGGGTGGCCTGGCGTTCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtata < 1:205839/251‑1 (MQ=255) cGATGCGCTTGTTTTCTTGGGTGTGGGGGTCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCCGCTCCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATaaa < 2:221312/251‑1 (MQ=255) ttttCTTCGGTCTGGGTGGACTTGCGATCGTGCCACGGCGTGTTAACCGCACTGGAAGGCAGCGCCGCACCGCCCTG‑CTGG‑CGCAGGATCAGGTTTTGCTCCGCCCGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAACTGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCCTTTATAAATCCCTGGAatt > 2:71906/1‑251 (MQ=255) tcttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAGGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAattat < 1:452552/250‑1 (MQ=255) cggcggtgggggTGGCCTTGCGATCGTGCCCGGGCGGGTTAACCGACCTGGAGGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAattatt < 2:239983/241‑1 (MQ=255) tcGGTCTGGGTGGCCTGGCGATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAtttt < 1:240834/250‑1 (MQ=255) gTCTGGGTGGCCTTGAGATCGTGCCACGGCGTGTTAACCGCACTAAAAGCCCGAGCCGCACCGACGTGCAGGA‑C‑CAGGATCCGGTTTTCCTACGCCAGCTCCTTGAGGTCGCGGCCACTAGCCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCATCGGACCTGACCTAAACCTGCTGCTTAACCAGTTCGATAACACCGTTCTGACGTTGTGTTTGTTTCATTTATAAATCGCTGGAATTAttttcgtt > 1:254753/1‑251 (MQ=255) cggggTGGCCGTGCGATGGTGCCACGGCGTGGTAACCGACCTGGATGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTGTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgttt < 1:315344/248‑1 (MQ=255) gCCTTGCGATCGTGCCACGGCGTGTTAACAGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCCTTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCAt > 2:402679/1‑251 (MQ=255) ccTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCAtt < 1:228067/251‑1 (MQ=255) gTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATc > 2:261560/1‑250 (MQ=255) ggCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaa > 1:110437/1‑249 (MQ=255) gCGTGTTAACCGAACGGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAAGTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGc < 1:319369/251‑1 (MQ=255) gttacccgacctgtacgccAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTGTTGCTCCGCCAGCTCATGGAGGTCGCGGCGAATAGTCGGCGGGCTGACGGAGAAATGCTCTACCAGCGCTTCGGTACGGACATAACCCTGCTGTTTAACCAGTTCGATAATGCCGTTTTGACTTTGTGTTTTTTTCAGTTATAAATCCCGGTAATTATTTTCGTTGTCGCGCATTGATCTAATCAACAAAAGCCATc < 2:438090/233‑1 (MQ=255) acccaaacgggacggcgccgcccagccGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt < 2:120929/226‑1 (MQ=255) aCCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt > 2:150641/1‑250 (MQ=255) ggaatgcggccccggaCCGCCAGG‑ATGG‑CGCAGGAACAGTTTGTGCTCCGCCAGCTCATTGAGGGCGCGGCGAATAGGCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGGCATAACCCTGCGGTTTAACGAGTTCGATAATACCGGTGTGACGTTGTGTTGGTTTCATGTATAAGTCCCTGGGATTATATTCGTTTTCGCGGATTAAGGGAAGCAACGAAGGCCAGCGCGAACCCCACg < 2:233128/236‑1 (MQ=255) ggAAGGCAGCCCCGCCCCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGCACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCAc < 1:308541/250‑1 (MQ=255) gAAGGCAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGATCGCGGCGAATAGTCTGCGGGCTGACGGAGACATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACgg > 1:80132/1‑251 (MQ=255) gccggcccgccccgccATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGGCGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAAACCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTaa < 2:292615/245‑1 (MQ=255) cAGCGCCGCACCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc < 1:246094/251‑1 (MQ=255) gccgcTCCGCCATG‑ATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGCCCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGATCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCgg > 2:457297/1‑251 (MQ=255) | CTTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCA‑TTGGGGATTTG‑CTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATG‑ATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGG > NC_000913/3560207‑3560686 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |