| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,313,864 | Δ16,405 bp | yjdP–rdcB | 18 genes yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnD, phnC, yjdN, yjdM, rdcA, rdcB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4313864 | 4330268 | 16405 | 26 [0] | [0] 27 | yjdP–rdcB | yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnD,phnC,yjdN,yjdM,rdcA,rdcB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4313863 | 0 (0.000) | 26 (0.850) | 26/488 | 0.2 | 100% | intergenic (+64/‑5) | rpiB/yjdP | allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B/protein YjdP |
| ? | NC_000913 | 4330269 = | 0 (0.000) | intergenic (+31/‑233) | rdcB/proP | regulator of diguanylate cyclase RdcB/osmolyte:H(+) symporter ProP | |||||
ACCATCAGTGGTTTGCCTCTTCGACCGTTCCGACGGGCGGGGAGCATGCTGATTTTTTAAGTTGGCTGGGAAAGTGGACCACGGCAGATAAACAACCCGTTTGCTGGTCAGTGACCCAACGCTGGCAAACTGTCGCGCTGGGGATGCCACGACTCTGTTCAGCGCAGCGTCTGGCGGGGGCAATGCTCGAGGAAATCTTCTCTGTAAATTTGGCGTAAATAATCAGTTACATCAATGAGTCCTAAACGAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTATGCTGAAAAGGAAAAAA > NC_000913/4330021‑4330519 | accttattccgcgcaactttcgcggcagcataacgacaccaacgtgctggcttttgattcacgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagaacagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagggtttctttttgaggttgaa > 2:68127‑M2/249‑250 (MQ=255)accttattccgcgcaacgttcgcggcagcataacgacaccaacgtgctggcttttggttcacgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaaggtggatagagtttctttttgaggttgaaa < 2:88520‑M2/3‑1 (MQ=255) tattccgcgcaactttcgcggcagcataacgacaccaacgtgctggcttttggttcacgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaattattaatgtggatagagtttctttttgaggttgAAATc < 1:28173‑M2/5‑1 (MQ=255) tattccgcgcaactttcgcggcagcataacgacaccaacgtgctggcttttggttcacgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATcc < 2:235888‑M2/6‑1 (MQ=255) caactttcgcggcagcataacgacaccaacgtgctggcttttggttcacgagaggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGa > 1:176307‑M2/236‑249 (MQ=255) cgttcgcggcagcataacgacatcaacgtgctggcttttggttcacgagtggttggccgcgaacgggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacgtgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTg < 1:142344‑M2/19‑1 (MQ=255) cgacaccaacgtgctggcttttggttcacgagtggttggcctcgaactgccaaaaatgattgaggatgcgaggctgggcgcacagtacgcaggcggtcgtcatcaacaacgcgtggaggagattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAacac > 1:268228‑M2/216‑251 (MQ=255) caacgtgctggcttttggttcacgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACCCTGGTAg < 2:63146‑M2/42‑1 (MQ=255) acgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGc < 1:169808‑M2/63‑1 (MQ=255) gcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAAGCCATGTGTGAAGTTGATCACAAATTTAAACACTGGGAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGc < 2:221381‑M2/74‑1 (MQ=255) gtggattcgtggctgggcgcacagttcgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTATGGTAAAAAGGTCATTAACGGCCCAATTCAGGCGTCAACTGGTTTGATTGTACAtt < 2:72283‑M2/97‑1 (MQ=255) gcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTa < 1:126654‑M2/102‑1 (MQ=255) gtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagacattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGCTCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAAcc > 2:67800‑M2/147‑251 (MQ=255) cagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGc > 2:93389‑M2/134‑251 (MQ=255) aaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACGGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCg < 2:76240‑M2/125‑1 (MQ=255) cgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCtt < 2:144303‑M2/133‑1 (MQ=255) ggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAg > 2:52208‑M2/102‑152 (MQ=255) ggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAg < 1:52208‑M2/51‑1 (MQ=255) ggagaaattgagattcatccactacttgcatggatgagtaatgattaatgcggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAACAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCgg > 1:120067‑M2/76‑251 (MQ=255) catggatgagtaatgcttactgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAATTTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGAGTaa > 2:126916‑M2/48‑163 (MQ=255) catggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTaa < 1:126916‑M2/116‑1 (MQ=255) gagtaatgattaatgtggatagaggttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAAt < 1:79353‑M2/210‑1 (MQ=255) agagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCGACGCTTGTTACAGAGATTGCATCCTGCAATGCGCGCTCCCCTTTTGCGGCCTTCGGGCGTATTTGTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGaaa < 1:190941‑M2/230‑1 (MQ=255) ctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTATGCt > 1:253335‑M2/14‑251 (MQ=255) tttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTATGCTGa < 1:50903‑M2/240‑1 (MQ=255) tgaggttgAAATCCATGTGTGAAGTGGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTTCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTATGCTGaaa < 2:4622‑M2/242‑1 (MQ=255) aaaTCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCGGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTATGCTGAAAAGGaaaaaa < 2:16773/251‑1 (MQ=255) | ACCATCAGTGGTTTGCCTCTTCGACCGTTCCGACGGGCGGGGAGCATGCTGATTTTTTAAGTTGGCTGGGAAAGTGGACCACGGCAGATAAACAACCCGTTTGCTGGTCAGTGACCCAACGCTGGCAAACTGTCGCGCTGGGGATGCCACGACTCTGTTCAGCGCAGCGTCTGGCGGGGGCAATGCTCGAGGAAATCTTCTCTGTAAATTTGGCGTAAATAATCAGTTACATCAATGAGTCCTAAACGAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTATGCTGAAAAGGAAAAAA > NC_000913/4330021‑4330519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |