| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,086,996 | Δ13,531 bp | yiiG–rhaT | yiiG, frvR, frvX, frvB, frvA, rhaM, rhaD, rhaA, rhaB, rhaS, rhaR, rhaT | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4086996 | 4100526 | 13531 | 18 [0] | [0] 18 | yiiG–rhaT | yiiG,frvR,frvX,frvB,frvA,rhaM,rhaD,rhaA,rhaB,rhaS,rhaR,rhaT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4086995 | 0 (0.000) | 18 (0.590) | 17/488 | 0.7 | 100% | intergenic (+146/‑7) | fdhD/yiiG | sulfurtransferase for molybdenum cofactor sulfuration/DUF3829 domain‑containing lipoprotein YiiG |
| ? | NC_000913 | 4100527 = | 0 (0.000) | intergenic (‑2/‑283) | rhaT/sodA | rhamnose/lyxose:H(+) symporter/superoxide dismutase (Mn) | |||||
CCACATAGCGCCGAACAGAAAAACAGGCAGTCGCGTAGAGAGACTAAACGAGCTGTAATACGCCCAGAAATTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGCAAAACCATACCCTTACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATG > NC_000913/4100277‑4100753 | cgcttgctgtagaagtggctgagcgctgtaatctgacactggtaggtttttgtaaaccgggtcgggcaacggtttatacccatccgcagcgtttgagcaattaattaaaataagtcctgcgaaatatattaaattgcaggacttattcatttcgtgaattttattattttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgtgcactctcttatctatatatttataaggct < 1:239820‑M2/1‑1 (MQ=255) tgctgtagaagtggctgagcgctgtaatctgacactggtaggtttttgtaaaccgggtcgggcaacggtttatacccatccgcagcgtttgagcaattaattaaaataagtcctgcgaaatatattaaattgcaggacttattcatttcgtgaattttattattttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgttcactctcttatctatatatttataaggcttc < 2:235603‑M2/3‑1 (MQ=255) gctgtagaagtggctgagcgctgtaatctgacactggtaggtttttgtaaaccgggtcgggcaacggtttatacccatccgcagcgtttgagcaattaattaaaataagtcctgcgaaatatattaaattgcaggacttattcatttcgtgaattttattattttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgttcactctcttatctatatatttataaggcttcttt > 1:60583‑M2/246‑250 (MQ=255) gacactggtaggtttttgtaaaccgggtcgggcaacggtttatacccatccgcagcgtttgagcaattaattaaaataagtcctgcgaaatatattaaattgcaggacttattcatttcgtgaattttattattttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgttcactctcttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACAtct > 2:156122‑M2/217‑251 (MQ=255) gcaacggtttatacccatccgcagcgtttgagcaattaattaaaataagtcctgcgaaatatattaaagtgcaggacttattcagttcgtgaattttattattgtatttataaacaaaatgcgtgtagtggcgttttctgtgtgcatgtattatgttcactctctgatctagatattgataaggcTTCTGATCCTCAGCATTTTTCGTCGCGTCACTTCTCCGACGagatgagtgtaaaaagcttactgtc < 2:120450‑M2/66‑11 (MQ=255) gcagcgtttgagcaattacttaaaataagtcctgcgaaatatattaaattgcaggacttattcatttcgtgaattttattattttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgttcactctcttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGCTTAACCTTTCGCCTGTTg > 2:36303‑M2/166‑251 (MQ=255) cagcgtttgagcaattaattaaaataagacctgcgaaatatattaaattgcaggacttattcatttcgtgaattttattcttttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgtttactctcttatctatatatttataatgcTTCTTATCCTCATCATTTTTCGTCACGTCACATCTCCGACGAGAAGAGTGTAAAAATCGTGATGAAGATTAACCTTTCGCCTGTTgc > 1:302505‑M2/165‑251 (MQ=255) taaattgcaggacttattcatttcgtgaattttattattttatttataaacaaaatgcttgtagtggcgttttcttttttcatttattatggtcactctcttatctatatatttataaggcTTCTTATCCTCATCAGTTGTCGTCGCGTCACATCTCCGACGAGATGAGTGAAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTg < 1:269159‑M2/129‑1 (MQ=255) ttgcaggacttattcatttcgtgaattttattattttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgttcactctcttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTg > 1:59517‑M2/118‑251 (MQ=255) caggacttattcatttcgtgaattttattattttatttataaacaaaatgcgtgtcgtggcgttttcttttttcatttattatgttcaatctcttctctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCt > 2:42491‑M2/115‑189 (MQ=255) caggacttattcatttcgtgaattttattattttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgttcactctcttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCGCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCt < 1:42491‑M2/75‑1 (MQ=255) aattttattattttatttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgttcactctcttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCt < 1:22085‑M2/157‑1 (MQ=255) ttataaacaaaatgcgtgtagtggcgttttcttttttcatttattatgttcactctcttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGCAAAACCATACCCt < 1:209957‑M2/172‑1 (MQ=255) gtggcgttttcttttttcatttattatgttcactcttttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGAATTGCTTCACATCTCGGGCATTTTCCTGCAAAACCATTCCCTTACGAAAAGTACGGCATTGAt < 1:169528‑M2/193‑1 (MQ=255) gttcactctcttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGCAAAACCATACCCTTACGAAAAGTACGGCATGGATAATCATTTTCAATATCATTTAATTAAc < 2:52217‑M2/220‑1 (MQ=255) cactctcttatctatatatttataaggcTTCTTATCCTAATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGACGACGTTGTCGATTTACTGGCAATCAAGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGCAAAACCATACCCTTACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACtat > 2:289024‑M2/29‑251 (MQ=255) ctcttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGCTGAGTGTAAAAATCGCGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGCAAAACCATACCCTTACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATg > 2:270731‑M2/25‑251 (MQ=255) cttatctatatatttataaggcTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGCAAAACCATACCCTTACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAAt < 1:156122‑M2/226‑1 (MQ=255) | CCACATAGCGCCGAACAGAAAAACAGGCAGTCGCGTAGAGAGACTAAACGAGCTGTAATACGCCCAGAAATTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGCAAAACCATACCCTTACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATG > NC_000913/4100277‑4100753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |