New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4542682 =	19 (0.620)	7 (0.240)	7/472	2.0	26.3%	intergenic (+49/‑433)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	4542996 =	21 (0.710)					intergenic (+363/‑119)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit

ATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATT  >  NC_000913/4542443‑4542929                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                        atatGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCattt                                                                                                                                                                                                                                              <  1:79449/251‑4 (MQ=255)                aaagtgaacggtcccaccattaaccgtcgtggcagcggccagagccgctgtagaactgagggacagcgccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataa                                                                                                                                                                                                                                <  2:242499‑M1/26‑1 (MQ=255)                               ttgCGGAACGTGGTGCAGCTACTCCTTTCATTCCGGATTATCTCGAGCCTCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGATTGGTTTGCCGGATTATGGAAAAGAAATAATCTCAGAAATGAAAAATTAAAACAAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACACGAAAATTGGGGCCTAACTGTCCATAACATAAATAAATTACG‑Attttt                                                                                                                                                                                                               >  2:303934/3‑251 (MQ=255)                               accattaaccgtcgtggcagcggccagagccgctgtagaactgagggacagagccgacagaacaacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTGACGTAtttt                                                                                                                                                                                                                >  1:242499‑M1/210‑251 (MQ=255)                                              aaaaTACTCGTTTAATCCAGGATTATCGCGGGCATCGAAATATTCGCCATACTGTGCTTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAAGTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAGTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa                                                                                                                                                                                                 <  1:158933/248‑1 (MQ=255)                                                            aTTCAGGATTATCGCGGGCATCAAAATATTCGCCATATGGGGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                                                                                                                   <  2:254055/251‑1 (MQ=255)                                                                                  agccgaaagaacaacgattgacagagttttaattttaatgctgctctactttcaaaaaactatttctaactcgccatgggcagtcgttctgtacactttgttttgtaaacgcgtttgcctgccaaaactgcacagttttcccccaaaagctgcaacctTTGGGGCCAAACTGTCCATATCATACATAAGTTACGTATTTTTTCTCCAGCATAAAAATATTAAAAAACGACAACAAGCATCTAACTGTTtgt                                                                                                                                                             <  1:21430‑M1/93‑2 (MQ=255)                                                                                   aaaTATTCGCCATACTGTGATTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                                                                                                                            <  2:49502/251‑1 (MQ=255)                                                                                    aaTATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCCCGTAATCCCGGATTATGGGAAAGAAATAATATCATAAACGCAAAGTTAAAAAGAGAAGAGGCTTGATTTAACTTATTGATAATAAAGTTATCAAAACAAATAAATACAAGACAATTGGCGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAACATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                                                                                                                            >  1:134114/1‑250 (MQ=255)                                                                                                            aCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatt                                                                                                                                   <  1:227669/251‑1 (MQ=255)                                                                                                             ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatt                                                                                                                                   >  1:173933/1‑250 (MQ=255)                                                                                                                 cAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAACTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                                                                                                                              >  1:53092/1‑251 (MQ=255)                                                                                                                        gctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGACAAATTACAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATc                                                                                                                        >  1:36391/1‑250 (MQ=255)                                                                                                                         gctgctttcctttcaaaaaactattgctaaatcgacatggacagtcgttctgtacactttgttttgtcaacgagtttgactgccaacactgcacagttttcccccataagatgaaacctTTGGGGCCAAACTGTCCATATCATACATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGCTATGTAACTTATTTCTTTTGTAAATTAATTTCACATCAc                                                                                                                      <  2:249359‑M1/132‑1 (MQ=255)                                                                                                                                                   agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGttt                                                                                            <  1:86154/251‑1 (MQ=255)                                                                                                                                                     aaatcgacatgggcagtcggtctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGGTTGATATGTAAATTATTTCTATTGTAAAGTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTc                                                                                           >  1:277087‑M1/92‑250 (MQ=255)                                                                                                                                                                    gtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATc                                                                           <  1:168358‑M1/175‑1 (MQ=255)                                                                                                                                                                     gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCctct                                                                          >  2:245685/1‑251 (MQ=255)                                                                                                                                                                                                           gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCAGAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTCTTTGATATGTAAATTATTTCTATTTTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTGCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAATCCACCTCATGCAatat                                    <  2:285656/251‑1 (MQ=255)                                                                                                                                                                                                           gATAATAAAGTTAAAAAAAAAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGAATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCacta                                     >  2:14510/1‑247 (MQ=255)                                                                                                                                                                                                            ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAAtata                                   <  1:282540/251‑1 (MQ=255)                                                                                                                                                                                                                   gcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATTTAAATTATTTCTATTGTAAATTAATTTCACAGCCCCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTGCTCTCCAAAAACCCCCTCATGCAATATAAACATCt                            >  2:148657‑M1/30‑251 (MQ=255)                                                                                                                                                                                                                            aaCAAATAAATACAAGACAAGTGGGGCCAAACAGTCCATATCATAAATAAGTTACGTATGTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTCTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACTTTTCTGTGGCTCGACGCAACTTCCTCATTCTTTTCTCCAAAAACCTCCTCATGCAAGATAAACATCTataaataac                   <  2:41041/251‑2 (MQ=255)                                                                                                                                                                                                                                aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCGCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATa               <  1:245685/251‑1 (MQ=255)                                                                                                                                                                                                                                           aaCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAGTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTTTAAATGAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTGCTCTCCAAAAACCACCGCATGCAATATAAACATCTATAAATAAAGATAACAATAGAata    <  2:269997/250‑1 (MQ=255)                                                                                                                                                                                                                                              aaTTGCGGCCAAACTATCCATATCATAAATAAGTTACGTATTTTTTCTCAAGAATAAAACTATTAAAAAACGACAACAAGCATCTAAATGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCAACTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACCTCTATAAATAAAGATCACAATAGacaatt  >  2:157352/1‑245 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                        ATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATT  >  NC_000913/4542443‑4542929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.