New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	20 (0.650)	18/490	0.6	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

CGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAAT  >  NC_000913/1979026‑1979513                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                   tccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATaa                                                                                                                                                                                                                                                >  2:75309‑M1/246‑250 (MQ=255)           aaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcagatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTc                                                                                                                                                                                                                                     >  2:245649‑M1/236‑251 (MQ=255)           aaggtccccggccattaccagccttgggggaaaacggctcgatgacttccaccatgttgtgccatggcagaatctgctccatgcgggacaagaaaatctctttgctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGt                                                                                                                                                                                                                                      >  2:162458‑M1/236‑250 (MQ=255)                cgtcggccattgcccgccttgggataaaacggctcgatgacagcggtcatattctgccatgtcagaatctgctccatgcgggagagtaaaatctcttttcgggtctgacggcgcttagttctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACt                                                                                                                                                                                                                                >  1:175189‑M1/231‑251 (MQ=255)                 gccggccattaccagccttggggtaaaactgctcgatgacttccaccatgttttgccattgcagaatcggctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcaggatgaaccctgtgctatggctccagatgacaaacatgatctcagatcatggacttgttcgcaccgtccttaaCAAATATGTAGAAGTCATACtt                                                                                                                                                                                                                               >  2:277591‑M1/230‑251 (MQ=255)                                 cttggggtaaaacggctcgatgacttcaaccatgttttgccatggaagaatctgctccatgcgggacaagaaaatctcttttctggtatgacggcgcttactgctgacttcactgtcggcgaaggtaagttgatgactcatgatgaaccatgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATCAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                                                                                                               <  1:146628‑M1/38‑1 (MQ=255)                                                      gacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                                                                                                                           >  1:193329‑M1/193‑250 (MQ=255)                                                                         catggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACgctagcaagaaa                                                                                                                                                                        <  2:163040‑M1/77‑4 (MQ=255)                                                                                  atctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                                                                                                                               <  1:93011‑M1/86‑1 (MQ=255)                                                                                                 gacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                                                                                                                               >  2:40827‑M1/150‑251 (MQ=255)                                                                                                     agaaaagctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggtcttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGaaatgcgat                                                                                                                                           >  2:128147‑M1/146‑247 (MQ=255)                                                                                                                tttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                                                                                                                  <  2:225155‑M1/115‑1 (MQ=255)                                                                                                                        acagatcccagcgtttcagtaaccactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                                                                                                                        >  1:47051‑M1/127‑251 (MQ=255)                                                                                                                                   tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa                                                                                                              >  1:170166‑M1/116‑250 (MQ=255)                                                                                                                                               cactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTGTTGGGTGTATTTCAAGCGGTTAAAAAGTTTTGCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCTAAATGGGATGTTGCGTACAGTCAAAATAACTCGCCGTAAATAATCATCTGc                                                                                                 >  2:46726‑M1/104‑251 (MQ=255)                                                                                                                                                      ggcgaaggtaagttgatgacacatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                          <  1:215120‑M1/155‑1 (MQ=255)                                                                                                                                                       gcgaaggtaagttgatgacgcatgatgaaccctgttctatggctccagatgacaaacatgatctcagatcagggacttgttcgcaccttccttaaCAGAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCGGTTAAAAAGTTGTTCGCTACGCTAGCAAGCAAAAATGAAACATGAAGAATCGAAATGGGATGTTGCTCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata                                                                                         >  1:294022‑M1/96‑251 (MQ=255)                                                                                                                                                                                        gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTCTCATGCAATACCAGAGAAGCTAttt                                                         >  2:290760‑M1/63‑250 (MQ=255)                                                                                                                                                                                                                  gatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCAcaacaa                               <  1:256613‑M1/214‑1 (MQ=255)                                                                                                                                                                                                                                               tccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAAt  >  2:63050‑M1/8‑250 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                   CGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAAT  >  NC_000913/1979026‑1979513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.