Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 557,635 | A→T | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 557,635 | 0 | A | T | 97.2% | 111.8 / NA | 36 | L36Q (CTG→CAG) | folD | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (13/22); minor base G (0/1); total (13/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
TCCAGCACTTTGACGTTATCAATACCCGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCAGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCGACCTCTTGCG > NC_000913/557407‑557855 | cccaccttttggacgtaacaaacccccGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCgg < 1:179642/226‑1 (MQ=255) cagatatttgcatatactCAATCCCCGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGTGCGGGAGACGAACCCGACTTCTTCCCAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCt < 1:254114/234‑1 (MQ=255) gttagtctaacacattccccGCCGGTAACGGCAGTTTAACCAGAATGACATCGTGGGTGTTGTCGGCATTCAGGGTATCGATAAGCTCCATCAGCTCCGCTTCGCGGGTGGTTGCCGGTAGGTCATAAGAGCGGGAGACTAACCCGACTGCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGATTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCaaga < 2:84046/234‑3 (MQ=255) ttgatgtcaTCATTACCCGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATAc < 1:99543/242‑1 (MQ=255) tctggttagaaaaaccccGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATGCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATGTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTTCAATAc < 2:414958/235‑1 (MQ=255) aCGTTATCAATACCCGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGGATCGATAAGCTCCAGCAGCTCCGCGTCGCTGGTGGTTTCCGGGCGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGAAGGGTTACTACCCACCAGCCCAAAGGCCTGTCCTGGTGCCCGCAGTCCTGCTGCCATACgcgc > 2:340560/1‑251 (MQ=255) aTCAATACCCGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCCCAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGa > 1:422262/1‑250 (MQ=255) tCAATACCCGCCGGTAACTGCAGTCGAAACAGAATTCCATCGATGGTGCTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGCCATAAGAGCGGGAGACGAACCCGCCTTCTTCCCAAGCCCTGCGGTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCCGCACCACAGCCTGTCCTTGTGACCGCAGTCCGGCTGCCATCCCCGCCTGAAc > 2:165643/1‑251 (MQ=255) ccccGCCGGTAACGGCAGTTGAACCAGAATGGCATCGATGCTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCCGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGTAGACGAGCCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACttttt < 1:227173/250‑1 (MQ=255) aCCCGCCGGTAACGGCAGTTGACCCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACttttt > 1:406944/1‑251 (MQ=255) cccGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTg < 1:235698/251‑1 (MQ=255) aCGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCa < 1:364447/251‑1 (MQ=255) gAATGCCATCGATGGTGGTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGTTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCtgctgc < 1:226231/251‑1 (MQ=255) cGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGt < 2:109822/250‑1 (MQ=255) aTGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGtttt < 1:177542/251‑1 (MQ=255) ggTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTAc > 1:16989/1‑251 (MQ=255) ggttgtCGGCATTAGGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTTCGCAATCGTTTTACCg < 2:406944/250‑1 (MQ=255) gttttCGGCATTCAGCTGATCGGTAAGCTCCAGCAGCTCCGCTTCGCTGTTGGTTTCCGTGAGGTCATAAGAGCGGGAGACGACCCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCGCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTTAGCAACTTTAGAGCGCACCTGCTGCGCAATCTGTTTACCGt < 2:156489/247‑1 (MQ=255) ttCAGCGAATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGAGGTTTCCGGGAGGTAATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAGCTTTTTGAGCAACTTCAGAGCGCACCTGCGGCGCCATCGTTTTACCGTCAATAATCtt > 2:31602/1‑251 (MQ=255) cAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATCATCTT‑tg > 2:94081/1‑251 (MQ=255) cGATAAGCTCCAGCAGCTCCGATTCTCTGTTGGTTTCCGGTAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTGGCGGTTGCTTTCGACATAAATTTGCGATGCATGGTTACTACCCACCTGCACAACGTCCTTTCCTGGTGCCCGCATTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACCTCAGAGCGCACCTGGTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCAt < 1:449327/250‑1 (MQ=255) cccAGCCGCTGCGCTGCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCATCagagagag < 2:305004/250‑1 (MQ=255) gggAGGTCATAAGAGCGGGAGACGAACCCGGCTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCGGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGcc < 1:323216/117‑1 (MQ=255) gggAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGATTGCGACATACCTTTGCGATGCAGGGTTACTACCCACCAGCACCACGGCCTGTCCTGGTGcc > 2:323216/1‑117 (MQ=255) gAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATTAATTGGCAATGCATGGTTTCTACCCACCAGCACTACGGCCGGTCCTGGTGCCCGCAGTCCGGCTTCAATACGCGCCGTATCTTTTTGAGCAGCGTCATAGCTCACCTGCTGCGCAATCGTGTTACCGTTAAGAATCGG‑TGTTGCCATCAGAGAGAGGATTCTATCTGTTACTGAGATCGAATGGGATg < 2:45807/251‑1 (MQ=255) aaGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTAtt > 1:119901/1‑251 (MQ=255) gaCGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGa > 1:260703/1‑249 (MQ=255) tcACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCa < 1:98391/250‑1 (MQ=255) aGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCAACAAGCACAACGGCCTGTCCTGGTGCCCACAGTCCGGCTGCAATACGCGCCTGCACTTTTTGGCCACCTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATACTCTT‑TGCAGCCATCAGAGAGAGGATTCCATCTGTTACGTCGATCGAAGGGGATGAGCCTATTTTGTCAGAAGCGGGGCGCGTTCTCAGgtttc > 1:248055/1‑251 (MQ=255) tGCGGTTGCTGGCGACATAAATTGGCGATGCAGGGGTACTACCCACCAGCACAACGTGCTGGCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCGGCGCTATCGTTTTACCGTCAATAATCTT‑TGCTTCCATCAGAGAGAGGATTCCATCTGTTCCGTAGAGTGAAGGGGAGGCTCCTTTTTTGTCACAAGCGGGGCGCGCTGTCatttgtcgttt < 2:432793/250‑11 (MQ=255) ggcgtgcGACATGAATTTGCGATGCAGGGTTACTACCCACCAGCACAACTGCCTGTCCTGGGGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTGTTGAGCAACTGCAGAGCGCACCTGCTGCGCAATCGTTTGACCGGCAATAATCTTGTG‑TTCCATCAGAGGGAGGAGTCCAGCTGGTACGTAGATCGAAGGGGATGCGGTTATTGTGTCAGAAGCGTGTCGCGCTGTCAGGTTTGGTTTCAGAttt < 2:417831/247‑1 (MQ=255) cattgcGACATAAATTTGCGATTCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATATGCGCCTGAACTTTTTGAGCAACTTCAGAGGGGACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGATGCCATGAGAGAGAGGGTTACATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTATCCGAGTTCGTTTCAGAtgat > 2:268301/3‑248 (MQ=255) aagttGCGATGCAGGGTAACTACCCACAAGCACAACAGCCTGTCCTGGTGCCCAGAGTCCGGCTACAAAACGCGCCTAAACTTTTTGACCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTGCCGTCAATAAACTA‑TGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGCGATGCGACTATTTTGTCAGAAGCGAGTTGCGCTGGCAGGTTTCGTTTCAGATATATCGCGTGAAGCg < 2:260703/248‑1 (MQ=255) cGATGCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCGACctct < 1:47567/251‑1 (MQ=255) gCAGGGTTACTACCCACCAGCACAACGGCCTGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCGACCTCTTGCg > 1:396862/1‑251 (MQ=255) ctacCCTCCATCACAACGGCCTGTCCTGGTGCCCTCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCAcc < 1:239343/87‑1 (MQ=255) | TCCAGCACTTTGACGTTATCAATACCCGCCGGTAACGGCAGTTGAACCAGAATGCCATCGATGGTGTTGTCGGCATTCAGCGTATCGATAAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCACAAGCCTTGCGTTTGCTTGCGACATAAATTTGCGATGCAGGGTTACTACCCACCAGCACAACGGCCAGTCCTGGTGCCCGCAGTCCGGCTGCAATACGCGCCTGAACTTTTTGAGCAACTTCAGAGCGCACCTGCTGCGCAATCGTTTTACCGTCAATAATCTT‑TGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCGACCTCTTGCG > NC_000913/557407‑557855 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |