| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,048,805 | Δ48,085 bp | [gfcB]–ycdU | 45 genes [gfcB], gfcA, insA4, insB4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF4, insE4, ycdU |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1048805 | 1096889 | 48085 | 23 [0] | [2] 27 | [gfcB]–ycdU | [gfcB],gfcA,insA4,insB4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF4,insE4,ycdU |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1048804 | 0 (0.000) | 23 (0.500) | 21/480 | 0.9 | 100% | coding (529/645 nt) | gfcB | lipoprotein GfcB |
| ? | NC_000913 | 1096890 = | 0 (0.000) | intergenic (+61/+675) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
ATTACGCTGGTGTCGGTATTGGCAACGCTTGTAGAATGGCGGATTTGGTTTGAAGCCTATTTTTTACTCTGCTATGTACCGTGCTTAATTTACTATTTTTTCTATTGTCGATTCCTCTGGCATAACGATTTTATGATGGCATGTGACATGTATTTCCGTTGGGGGCATTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG‑GCTGTCGCCAGTTGTC‑GACCCCCGGTCGGGGCTTCTCATCC > NC_000913/1096650‑1097140 | ccacggggccaacggaaagtgtctgttgttcaccaggcagataaatagtcaccgttccttgcgcaaaggcatggggtgtcattacgtaaagtacgctggcaatgaaatacgactgtaatttattcatggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACt < 1:292546‑M2/10‑1 (MQ=255) gccaacggaaagtgtctgttgttcaccaggcagataaatagtcaccgttccttgcgcaaaggcatggggtgtcattacgtaaagtacgctggcaatgaaatacgactgtaatttattcatggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgAGTGTGGACTGAGTAAcc < 2:55280‑M2/18‑1 (MQ=255) acggaaagtgtctgttgttcaccaggcagataaatagtcaccgttccttgcgcaaaggcatggggtgtcattacgtaaagtacgctggcaatgaaatacgactgtaatttattcatggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGAc < 1:317650‑M2/22‑1 (MQ=255) gtgtctgttgttcaccaggcagataaatagtcaccgttccttgcgccaaggcatggggtgtcattacgtaaagtacgctggcaatgaaatacgactgtaatttattcatggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgcccctgATTGTGGACTGAGTAACCAGACAGGTGAt > 2:664‑M2/223‑251 (MQ=255) ctgttgttcaccaggcagataaatagtcaccgttccttgcgccaaggcatggggtgtcattacgtaaagtacgctggcaatgaaatacgactgtaatttattcatggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGc > 1:308644‑M2/219‑251 (MQ=255) ctgttgttcaccaggcagataaatagtcaccgttccttgcgcaaaggcatggggtgtcattacgtaaagtacgctggcaatgaaatacgactgtaatttattcatggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagacgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGc > 2:115422‑M2/219‑251 (MQ=255) ataaatagtcaccgttccttgcgcaaaggcatggggtatcattacgtaaagtacgctggccatgaaatacgactgtaatttattcatggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCt > 1:285342‑M2/201‑251 (MQ=255) cattacgtaaagtacgctggcaatgaaatacgactgtaatttattcatggtgcgggtttaagaaacgtcattgctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAAtata < 2:1793‑M2/89‑1 (MQ=255) attacgtaaagttcgctggcaatgaaatacgactgtaatttattcagggtgcgggtttaagaaacgtcgtttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGTCGGGGGCACCCGGTGTGTGCAATATACg < 2:249672‑M2/91‑1 (MQ=255) aatttattcatggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt < 1:456893‑M2/127‑1 (MQ=255) atggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCCCGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATAc > 2:12701‑M2/116‑205 (MQ=255) atggtgcgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAatataa < 1:12701‑M2/90‑2 (MQ=255) ggtgctggtttaagacacgtcatttctacgggaataacccctgcgcctaacatttgccgtctttgacgaacctggccagtagccgaatcgacccggaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCTTCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCg < 1:249018‑M2/137‑1 (MQ=255) cgggtttaagaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTc > 1:20703‑M2/110‑220 (MQ=255) agaaacgtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgcatcgaaccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATCTACGAAAAACAAGCCCGTACTTTCGTACGAGCTCTTCtttaaatatggcggggggtggggggg > 2:458637‑M2/102‑239 (MQ=255) gtcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTGGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGTGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGAGGTGGGGATTGACtc < 2:401230‑M2/156‑1 (MQ=255) tcatttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATAtggcgg‑ggagggggggggtgagtcg > 1:37636‑M2/95‑242 (MQ=255) catttctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTTTGCAATATACGAAAACAAAGCCCGTACTTTCGTCCGAGCTCTTCTTTAAATAGGGCGGTTGggggggggagtgctgcg > 2:258667‑M2/94‑243 (MQ=255) tctacgggaataacccctgcgcctaacatttgccgactttgacgaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGAGGGGGGGATTGACtcgcttc < 1:115422‑M2/161‑1 (MQ=255) aacccctgcgcctaacatttgccgactttgacgaacctggcaagcagcagaatcgacccaggatgcgttttgccactgCTTGTTGCCTGAGTAACCAGACAGTTGATGTGCACGATTTCCACTCACCCTAACAGACGTGGCCGGGGGCACCCGGGGAGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGCGGGGGGGATTgactcacttctctcccgcctcg > 1:222739‑M2/79‑243 (MQ=255) gaacctggccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGCGGGGGGGGGTGACTTGCTTTCTTCGCCCCTCGGGGCGCCCGCCCACTCCGGTCACGGGCTGTcc > 1:269442‑M2/47‑251 (MQ=255) ggccagtagccgaatcgacccagaatgtggtttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCATCCCGCTCACTGCGTTCTCGGTCTGTCCAACTg‑g < 2:233744‑M2/211‑1 (MQ=255) ccagtagccgaatcgacccagaatgtgttttgccactgATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG‑GCt < 1:107865‑M2/213‑1 (MQ=255) tGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAg > 1:141098/1‑120 (MQ=255) tGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCACGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAg < 2:141098/120‑1 (MQ=255) aTTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGAGGGGGGGGGTGAATCGCCTCCCTCGCCCCTCGGGCCGCCCCCCCACCGCGGTTACGCTCTGTCCACCCGCGCT‑TCGCCAGTTGTCTGACCCCCGGTCGGG‑CGTCTCATcc > 1:129077/1‑251 (MQ=18) aTTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCGCACTGCGTTCACGGTCTGTCCAACTG‑GCTGTCGCCAGTTGTC‑g < 1:246953/227‑1 (MQ=255) | ATTACGCTGGTGTCGGTATTGGCAACGCTTGTAGAATGGCGGATTTGGTTTGAAGCCTATTTTTTACTCTGCTATGTACCGTGCTTAATTTACTATTTTTTCTATTGTCGATTCCTCTGGCATAACGATTTTATGATGGCATGTGACATGTATTTCCGTTGGGGGCATTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG‑GCTGTCGCCAGTTGTC‑GACCCCCGGTCGGGGCTTCTCATCC > NC_000913/1096650‑1097140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |