Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,016,437	Δ2 bp :: IS186 (–) +8 bp :: Δ1 bp	coding (570‑577/687 nt)	fliH →	flagellar biosynthesis protein FliH

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2016437 =	0 (0.000)	60 (1.320)	55/478	0.0	100%	coding (570/687 nt)	fliH	flagellar biosynthesis protein FliH
	?	NC_000913	2514274 =	NA (NA)					noncoding (2/1345 nt)	IS186	repeat region
*	?	NC_000913	= 2016444	0 (0.000)	57 (1.250)	52/480	0.1	100%	coding (577/687 nt)	fliH	flagellar biosynthesis protein FliH
	?	NC_000913	= 2515615	NA (NA)					noncoding (1343/1345 nt)	IS186	repeat region

CGGTGGCTTCCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2016680‑2016437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCATGGG  >  NC_000913/2514274‑2514520                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cgggGGCTTCCAGCACCAGCCCGGGAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCAGTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGAGCGCCCATAA                                                                                                                                                                                                                                                  <  2:414931/247‑1          CCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAAC                                                                                                                                                                                                                                          <  1:106855/250‑1                              cggtgtattcgaCCGTCGCGACGGCCCGCAGGTAACTGCGCCAGTTGTGCTTCAAAGTTATCCAGCGTGGGTCGCCAGCGATTCAAGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTGCTTGCCAGCGAGAGGCGCCCCTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGC                                                                                                                                                                                                                     <  2:427217/239‑1                                gatcaatcgaccggtGCGACGTACCGCAGGCGACGGCGCCAATTTGGCTTAAAAGTTATCCAGCGGGGTTAGCCAGCGAGTCAGGCGCGTGGTAATTACACCACTCCTGGTGCTGCCTGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCT                                                                                                                                                                                                                   <  2:143244/236‑1                                GGTTAACCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCT                                                                                                                                                                                                                   <  2:317748/251‑1                                 GTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTG                                                                                                                                                                                                                  >  1:447202/1‑251                                           CGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTGCTGGTGCTGCCATACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTGCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTA                                                                                                                                                                                                        <  1:460956/251‑1                                           CGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGCGGGGGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT                                                                                                                                                                                                         >  1:129674/1‑250                                              AGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGGTGGAGGGGGGGATCGCCCATAAGCGCTCACTTAAGGGTTGGGGATTTACGCCTGTTATttttttacg                                                                                                                                                                                                     >  2:246792/1‑242                                                 GACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGC                                                                                                                                                                                                  >  1:97569/1‑251                                                  ACGTCCCGCAGGCAACGGCGTCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC                                                                                                                                                                                                 <  2:129674/251‑1                                                  ACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC                                                                                                                                                                                                 <  1:246792/251‑1                                                      ACCGCAGGCAACTGCGCCATCTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGCGACTTTACAGCCGCCAGGGTGGAGGGTGGGGTCGCCCATAAGCGCTAACTTCAGGGTTGTGGCAATACGCCGGGTCTGCTTTAACGTGCCGATG                                                                                                                                                                                             >  2:465171/1‑251                                                          CAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGATACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATT                                                                                                                                                                                         >  1:158013/1‑251                                                           aggcacccGCGCCATTTTGGATTCCAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCCTTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGTGATCGCCTTCATCGGCGGAGGCTTTACAGCCGCCCGGATGGAGGGGGGGATCGCCCATAAGCGCTAAATTAAGGGTTGTGGTATTACGCCCGATATGATTTAACGTGCCGATGAAat                                                                                                                                                                                         >  2:24447/9‑248                                                             GCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCCGGATGGGGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT                                                                                                                                                                                                                            >  2:365215/1‑213                                                             GCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGT                                                                                                                                                                                                                            <  1:365215/213‑1                                                                     GCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGAT                                                                                                                                                                              <  2:119040/251‑1                                                                      CCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATA                                                                                                                                                                             <  1:44253/251‑1                                                                      CCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATA                                                                                                                                                                             <  1:404013/251‑1                                                                           TTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTCGCAATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGACAGGATGGAGGGTGGGATCGCCCATAAGCGCTACCTTAAGGGTTGTGGTATTTCGCCTGATATGATTTAACGTGCCGATGGATTACTCTCACGATAACTGG                                                                                                                                                                        >  1:426806/1‑251                                                                              GCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGAGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTC                                                                                                                                                                      >  1:396608/1‑250                                                                                TTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGC                                                                                                                                                                   >  1:122775/1‑251                                                                                  CAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCGCTCCTGTGGCTGCCAGACGGCAGAGTGCTTTCCAGCGAGTGGCGACACTGGCGTTGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGGCCATAAGCGCTAACTTAAGGGTTGTGTTATTACGCCGGATATGATTTAACTTGCCGATGAATTACCCTCACGATAACTTGTCAGCA                                                                                                                                                                  <  2:174445/250‑1                                                                                    AAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTAAAGCCGCCAGGATGGAGGGGGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGGTATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGGCAGCAATT                                                                                                                                                               >  1:20467/1‑251                                                                                        TATCCAGCGTGGTTAGCCAGCTGGTCAGGCGCGTGGTCATTACACCACTCCTGGGGCTGCCATACGGCAGAGTGCTTGCCAGCGAGTGGCGACACTGGCGGCGATATCGGCTTCATCGGCGGAGACTTGACAGCCGCCAGGAGGGAGGGTGGGATCGCCCATAATCGCTAACGTAAGGGTTGGGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAGTCTCACGATAACTGGTCAGCAATTCTG                                                                                                                                                            <  2:450478/250‑1                                                                                           CCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCC                                                                                                                                                         <  1:128009/250‑1                                                                                            CAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCA                                                                                                                                                       <  1:109047/251‑1                                                                                            CAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCAGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCC                                                                                                                                                        >  1:409527/1‑250                                                                                             AGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCCGGGTGGAGGGTGGGATCGCCCATAAGGGCTAACTTAAGGGGTGAGGGATTACGCCTGATATGATTTAACGTGCCGGTGAATTACTCTCACGATAACTGGTAGGCAATTCGGGCCCg                                                                                                                                                       >  1:255568/1‑249                                                                                                GTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATT                                                                                                                                                   <  1:328305/251‑1                                                                                                       GCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGACGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGC                                                                                                                                            >  1:179462/1‑251                                                                                                         CAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCATCGAGTGGCGACACTGGCGTCGAGATCGCCGTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTT                                                                                                                                                                                                                                        <  1:222787/157‑1                                                                                                         CAGCGAGTCAGGCGCGTGGTCATTACACCAATCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGCGACTTTACCGCCGCCAGGATGGAGGGTGGGGTCGCCCATACGCGCTCACTT                                                                                                                                                                                                                                        >  2:222787/1‑157                                                                                                            CGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAA                                                                                                                                       <  1:362745/251‑1                                                                                                             GAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGA                                                                                                                                        >  1:83281/1‑249                                                                                                                 CAGGCGCTTGGTCATTACACCACGCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGAGGGAGGGTGGGATCGCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAAC                                                                                                                                   <  1:305866/250‑1                                                                                                                     CGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAT                                                                                                                              <  2:258940/251‑1                                                                                                                     CGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAAGCCTGATATGATTTAACGTGCCGATGAATTACTATCACGATAACTGGTCCGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAT                                                                                                                              >  1:249924/1‑251                                                                                                                                           TGGTGCTGCCAGACGGCAGAGTTCTTGACAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGCGACTTTACCGCCGCCAGGGTGGAGGGTGGGATCGCCCATAAGCGCTAACTTACGGGATGTGGGATTACGCCTGATATGATTTAAAGTGCCGACGAATTACTCTCACGATAACTGGGCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCCCGTAATGCCGGGG                                                                                                        >  2:58733/1‑251                                                                                                                                             GTGCGGCCAGACGGCAGAGTTCGTGCCAGCGAGTGGCGACACTGGCGTCTAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCT                                                                                                      <  2:158013/251‑1                                                                                                                                                   ccagtcgtCAGAGTTCTTGCCAGCGAGAGGCGACACTGGCGTCGAGCTCGCCATCATCGGCGGATACGTTACTGCCGCCTGGATGGACGGTGGGATAGCCCATAAGCGCTAACTTAAGGGTTGCGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCCGCAATTCTGGCCCATATTGGGACGCCCGAAGAACTGGATACTTCGGCACGTATTGCCGGGGCTCTAACC                                                                                                <  2:133191/243‑1                                                                                                                                                    CAGACGTCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCC                                                                                               <  2:262534/251‑1                                                                                                                                                       ACGGCAGAGTTCTTGCCAGCGTGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGTCTCTAACCCGCC                                                                                            <  2:396608/251‑1                                                                                                                                                               GTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGGCGCCAGGATGGAGGGCGGGATCGCCCATAAACGCTAACTTACGGGTTGTGGTATTACGCCTGCTATGATTTAACGTGCCGATGAATTACTCACACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCCCTAACCCGCCGCCGCGA                                                                                     >  1:445944/1‑250                                                                                                                                                               GTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGA                                                                                     >  1:235260/1‑250                                                                                                                                                                 TCTTGCCAGCGAGTGGCGACTCTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAA                                                                                   <  1:372510/250‑1                                                                                                                                                                             gaGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGC                                                                      <  1:151063/249‑1                                                                                                                                                                               GGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGCTGGAGGGTGGGATCGCCCATAAGCGCTAAATTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGCATTACTCTCACGATAACTGGGCAGCAATTCTGGCCCATATTGGTAAGACCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAAACCGCCGCCGCGCAATTCGgtatgcttca                                                                     >  2:420329/1‑240                                                                                                                                                                                        GGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTA                                                            <  1:31922/250‑1                                                                                                                                                                                                GATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCCACGTCTGGGG                                                   >  1:372707/1‑251                                                                                                                                                                                                   CGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCGCTAACCCGCCGTGGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCT                                                 <  1:29337/250‑1                                                                                                                                                                                                        TCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCT                                             <  1:261612/249‑1                                                                                                                                                                                                                GGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGACTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCG                                   >  1:300356/1‑251                                                                                                                                                                                                                  AGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGG                                 >  1:9063/1‑251                                                                                                                                                                                                                                 CAGGATGGAGGGGGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCGCACGATAACTGGTCAGCAATTCTGGCCCATATGGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGTGATGTCATTACGT                  <  2:447202/251‑1                                                                                                                                                                                                                                          GGGTGGGATCGCCCATACGCGCTAAGTTAGGGGTTGTCGTATTCCGCCTGAAATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGATCAGCAATTCTGGACCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTACTGCCGGGGCTCTAACCCGCCGCCGCGACATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTAACT         >  1:421497/1‑251                                                                                                                                                                                                                                                 ATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCATGGG  <  2:238725/251‑1                                                                                                                                                                                                                                                   CGCCCATAAGCGCTAACTTACGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGAT                            >  2:463314/1‑223                                                                                                                                                                                                                                                   CGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGAT                            <  1:463314/223‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGGTGGCTTCCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2016680‑2016437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCATGGG  >  NC_000913/2514274‑2514520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.