Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,003,9210TG24.2% 52.8 / 10.7 33Y145D (TAT→GAT) xdhCputative xanthine dehydrogenase iron‑sulfur‑binding subunit XdhC
Reads supporting (aligned to +/- strand):  ref base T (4/21);  new base G (8/0);  total (12/21)
Fisher's exact test for biased strand distribution p-value = 3.57e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGACAGTTGCTTATACCTTGCCGCCTGGGCTGAAGGAAAAGAGATCCGCACGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTAACAACTCATATTTCTTAATCTTGCGATAGAGCGTAGCAATGCCGATGCCCAGTTCATCAGCAACTTGCTTCTTGCTGTTATGACGTGAAAGCGCCTCGCGGATCATTTGCTTTTCCATCTCCTCCAGCGC  >  NC_000913/3003671‑3004148
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                        
aGACAGTTGCTTATACCTTGCCGCCTGGGCTGAAGGAAAAGAGATCCGCACGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTTCACGGGGt                                                                                                                                                                                                                                          <  1:232479/251‑1 (MQ=255)
aGACAGTTGCTTATACCTTGCCGCCTGGGCTGAAGGAAAAGAGATCCGCACGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGGCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGt                                                                                                                                                                                                                                          <  1:272838/251‑1 (MQ=255)
        gCTTATACCTTGCCGCCTGGGCTGAAGGAAAAGAGATCCGCACGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGGCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAgatg                                                                                                                                                                                                                                 <  1:93544/251‑1 (MQ=255)
           tataCCTTGCCGCCTGGGCTGAAGGAAAAGAGATCCGCACGCTGGAAGGTGACGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTTGCTGCACGGGGTAttagctgaat                                                                                                                                                                                                                               >  1:193789/1‑242 (MQ=255)
            ataCCTTGCCGCCTGGGCTGAAGGAAAAGAGATCCGCACGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGGATCAGATGATTg                                                                                                                                                                                                                            >  1:233319/1‑251 (MQ=255)
                          gggCTGAAGGAAAAGAGATCCGCACGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGGAATATTTTTTGCTGCACGGGGGATAAGATGATTGTAAAAACAGTTCTg                                                                                                                                                                                                             >  2:93530/1‑251 (MQ=255)
                                                cACGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCATATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTaaa                                                                                                                                                                                       <  1:196026/251‑1 (MQ=255)
                                                  cGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAg                                                                                                                                                                                     <  1:97595/251‑1 (MQ=255)
                                                  cGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATCCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCCTTGACGCTGCCCGGGGGATCAGATGATTGTCAATACAGTTTTGGGATGCGCGAAAACGAAGGaaaa                                                                                                                                                                                      >  1:119269/1‑250 (MQ=255)
                                                  cGCTGGAAGGTGAAGCGAAAGGCGGAAAACTGTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAg                                                                                                                                                                                     <  2:171459/251‑1 (MQ=255)
                                                    cTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTTTCGCTTGACGGGGGGTCAAATGATGTACAATACAGTTTTGGATTGTGAGAAAAAGAAGAaaaaagg                                                                                                                                                                                   >  1:14937/1‑248 (MQ=255)
                                                      ggAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGata                                                                                                                                                                                 <  2:238188/251‑1 (MQ=255)
                                                         aGGTGAATCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATcc                                                                                                                                                                              <  2:167942/251‑1 (MQ=255)
                                                             gAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGc                                                                                                                                                                           <  2:182045/250‑1 (MQ=255)
                                                               aGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGGAATCTTTGTCGCTGCACGGGGGGTCAGCTGATTGTAAATACAGTTTTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGcc                                                                                                                                                                          >  1:150534/1‑249 (MQ=255)
                                                               aGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGcc                                                                                                                                                                          <  2:150534/249‑1 (MQ=255)
                                                                       gCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAgg                                                                                                                                                               <  1:190697/251‑1 (MQ=255)
                                                                          gAAAACTTACTCAGGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTGTGTACGCCGGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCAGTACGGAAATTCGTCGCGGACTGGCGGGAAATCGTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGACATCCGGCCTGAATTCAGGCCg                                                                                                                                                            <  2:158120/251‑1 (MQ=255)
                                                                           aaaaCTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCgg                                                                                                                                                           <  1:77149/251‑1 (MQ=255)
                                                                               cgttCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTAGTACGCCGGGCCTGAGTATGGCTACCACGGCAATGCGGGCGAGACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGGCGCTGCACGGGGTAGCAGATGATTGTAAAGACAGTTCTGGATTGCGAGAAAACGAAGCAAAAGGAGATCCGGCCTGAATTCAGGCCGGATTc                                                                                                                                                      <  2:247461/249‑1 (MQ=255)
                                                                                           cagcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTAtg                                                                                                                                          <  1:93530/251‑1 (MQ=255)
                                                                                           cagcagGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTAtg                                                                                                                                          <  2:233319/251‑1 (MQ=255)
                                                                                                    tATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTaac                                                                                                                                  <  2:86180/250‑1 (MQ=255)
                                                                                                               cGGCGCAGTGCAGTGCGACTTTTGTACGCCGGGCCTGATTAGGGCTACCCCGGCAATGCTGGCGAACCCACGCGAGAAGCCATTAACCATTACGGAAATTCTGCGCGGACTAGCGTGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTGCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAAGTCAGGCCGTATTCACTGAGGTTATGTGTTTAGCTACTCATATTTc                                                                                                                      <  2:175768/251‑1 (MQ=255)
                                                                                                                  cgcAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAAACTTTTTTGCTGCACGGGGGATACAATGGATTTAAAAACAGGTCTGGAATGCGAGAAAACGAAGTAAAAAGAGATCCGGCCTTAAATCAGGCCGGGTTCGCTGAGGGTATgtgtgttacaaacccaactttgtt                                                                                                                   >  2:6233/1‑231 (MQ=255)
                                                                                                                                           cctggcctgATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTTTCGCTGCACGGGGGATCAGATGATTGTAAATACAGTTCTGGGTTGCGGGAAAACGGAGGAAAAGGGTATTCCGCCTGAATTCAGGCCGGGTTTACTGGGGGTATGTGTTTAAACACTCATATTTTTTCATCTTGTGAt                                                                                                         >  1:243394/1‑236 (MQ=255)
                                                                                                                                           ccgggcctgATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTAACAACTCATATTTCTTAATCTTGCGAt                                                                                                         <  2:243394/233‑1 (MQ=255)
                                                                                                                                                 ctgATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGGAAACTCTTTCGCTGCACGGGGGATTAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACACAGTAAAAGAGTATCCGGCCTGGATTTAGGCCGGCGTTCCTTAGGGTTTGTGTTTTACCACTCATATTTTTTTATCTTTCGGTTGAGCGGAGACATGCCGATGc                                                                                    >  2:26015/1‑251 (MQ=255)
                                                                                                                                                     ttATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGGAATCTTTTTTGCTGCCCGGGGTATCAGATGGTTGTAAATACCGGTCTGGAGTTCGGGAAAAAGAAGTAAAAAGAGATTCGCCCTGTAATTCGGGCGGGTTCACTGAGGGTTTGTGTTTTACAAAACACATTTTTTTATCTTGTGGTAGAGGGTGGCAATGCCgcaggcccc                                                                                >  2:290506/1‑243 (MQ=255)
                                                                                                                                                       aTGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTAACAACTCATATTTCTTAATCTTGCGATAGAGCGTAGCAATGCCGATGCCCAGtt                                                                              <  1:263838/251‑1 (MQ=255)
                                                                                                                                                                                    aCGCGAGAAGCCATTAACCATTACGGAAATTCGGCGCGGACTGGTGGGAAATCGTTGTCGCTGCACGGGGTATCAGAGGAGTGTAAATACAGTTCGGGATTGCGAGAAAACGAAGTAAAAgg                                                                                                                                                                                    <  1:42635/122‑1 (MQ=255)
                                                                                                                                                                                        gagaAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCAAGGGGTATCAGATGATTGTAAATACAGTTCTGGGTTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTAACAACTCATATTTTTTAATCTTTCGATAGAGCGTAGCAATGCCGATGCCCAGTTCATCAGCAACTTGCTTCTTGCTGTTTTGACggg                                             >  1:276003/1‑249 (MQ=255)
                                                                                                                                                                                                         tACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTAACAACTCATATTTCTTAATCTTGCGATAGAGCGTAGCAATGCCGATGCCCAGTTCATCAGCAACTTGCTTCTTGCTGTTATGACGTGAAAGCGCCTCGCGGAt                             <  1:201657/250‑1 (MQ=255)
                                                                                                                                                                                                               aaTTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTAACAACTCATATTTCTTAATCGTGCGATAGAGCGTAGCAATGCCGATGCCCAGTTCATCAGCAACTTGCTTCTTGCTGTTATGACGTGAAAGCGCCTCGCGGATc                            <  1:302276/245‑1 (MQ=255)
                                                                                                                                                                                                                                   gAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTAACAACTCATATTTCTTAATCTTGCGATAGAGCGTAGCAATGCCGATGCCCAGTTCATCAGCAACTTGCTTCTTGCTGTTATGACGTGAAAGCGCCTCGCGGATCATTTGCTTTTCCATCTCCTCCAgcgc  >  2:159822/1‑251 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                        
AGACAGTTGCTTATACCTTGCCGCCTGGGCTGAAGGAAAAGAGATCCGCACGCTGGAAGGTGAAGCGAAAGGCGGAAAACTTTCTCATGTTCAGCAGGCTTATGCGAAATCCGGCGCAGTGCAGTGCGGGTTTTGTACGCCTGGCCTGATTATGGCTACCACGGCAATGCTGGCGAAACCACGCGAGAAGCCATTAACCATTACGGAAATTCGTCGCGGACTGGCGGGAAATCTTTGTCGCTGCACGGGGTATCAGATGATTGTAAATACAGTTCTGGATTGCGAGAAAACGAAGTAAAAGGATATCCGGCCTGAATTCAGGCCGGATTCACTGAGGTTATGTGTTTAACAACTCATATTTCTTAATCTTGCGATAGAGCGTAGCAATGCCGATGCCCAGTTCATCAGCAACTTGCTTCTTGCTGTTATGACGTGAAAGCGCCTCGCGGATCATTTGCTTTTCCATCTCCTCCAGCGC  >  NC_000913/3003671‑3004148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: