| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,640,057 | Δ7,591 bp | [rrrQ]–[dicC] | 18 genes [rrrQ], [ydfR], essQ, ynfU, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, [dicC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1640057 | 1647647 | 7591 | 35 [0] | [1] 36 | [rrrQ]–[dicC] | [rrrQ],[ydfR],essQ,ynfU,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,[dicC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1640056 | 0 (0.000) | 35 (1.150) | 35/486 | 0.1 | 98.6% | coding (2/534 nt) coding (310/312 nt) |
rrrQ ydfR |
putative lysozyme protein YdfR |
| ? | NC_000913 | 1647648 = | 1 (0.030) | coding (203/231 nt) | dicC | putative DNA‑binding transcriptional regulator DicC | |||||
TGGTGTCGATAGCCTTCCAGCGTTCAAATATCTTCACTCGATTAACGCCAAGCGCTCGCTGATCAATCGCGCCACCTTCATATGTGACACGCTGAACATCGATGTTCGGGCGCTCTTTCAAAGCCCAGAATGCTTCAGTGATTAATATCGTCGCCTGCTCCTGTGTCATTCCTGGTCGACATATCCAGGCATCCAGAGCCTCACGAGCCTGTTCAGGAGTGATTTTCATTGTTCAACCGCCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAAAACACCTTTATTGTTAGTCATAACTAACAAGATAGATGTTA > NC_000913/1647408‑1647895 | aatggcgttgacctggtcgcatttttccttcgacagtttcatattgggaaaaacggtttttccgtccaccacggtggcgccccgacagatggtccatatgcgagaaccatcgcggtatgccattgtgtggttaccttctttttcggccagaaactggtcaagtatctgatgatcagatgcgcctgcaccaatcagcgccagaactgcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCtt < 1:125465‑M2/11‑1 (MQ=255) atggcgttgacctggtcgcatttttccttcgacagtttcatattgggaaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcaggcgacaggccgtagctgatcttttgtgttcaCCCGCCCGCTTc < 1:95018‑M2/12‑1 (MQ=255) gttgacctggtcgcatttttccttcgacagtttcatattgggaaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcggccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccggatctgatcttttgtgttcaCCCGCCCGCTTCGTCtt < 2:217589‑M2/17‑1 (MQ=255) ccctggtcgcatttgtccttcgacagtttcatattgggaaaaacggtttttccatccaccactgtggctccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttcttttgcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagcggacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGa < 2:234297‑M2/21‑1 (MQ=255) gtcgcatttttccttcgacagtttcatattgggaaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATtc > 1:7584‑M2/226‑251 (MQ=255) cgcatttttcctgcgacagtttcatatttgaaaagacgggttttccatccgctactgtggcaccccgccagatggtccatatgccagaaccatcgctgtatgccatggtgtggttaactgctttttcgtccagaaactggtcaaggatctgaggagcagatccgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttaaCCCGCCCGCTTCGTCTTACGATATtca < 2:5590‑M2/27‑1 (MQ=255) ccttcgacaatttcatattgggaaaaacggtttttccatccaccactgtggcaccccgaaagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaacaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttacCCCGCCCGCTTCGTCTTACGATATTCATCATAAACtt > 2:18654‑M2/215‑251 (MQ=255) cttcgacagtttcatattgggaaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACttt > 2:228139‑M2/214‑251 (MQ=255) tcgacagtttcatattgggaaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACttt < 1:303042‑M2/38‑1 (MQ=255) agtttcatattgggaaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatcggatcttttgtgttctCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCa < 1:287622‑M2/45‑1 (MQ=255) actgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGc > 1:253260‑M2/171‑251 (MQ=255) caccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATcgcgc > 1:10995‑M2/164‑251 (MQ=255) accccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATcgcgcg > 2:248537‑M2/163‑251 (MQ=255) cgacagagggtccaaatgccagaaccaccgcggtatgccattgtggggtttccttccttttcgtccagaaactggtcaagtatctgaggagcaggtgcgccagccccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtttccaCCCGCCCGCTTCGTCTGACGATATTCATCATAAACTTTGGGATCATACTGATGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCt < 1:20834‑M2/93‑1 (MQ=255) gacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCtt < 1:228139‑M2/94‑1 (MQ=255) agaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCttt > 1:467‑M2/139‑251 (MQ=255) aaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTcc < 1:248537‑M2/115‑1 (MQ=255) cattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGc < 1:109425‑M2/131‑1 (MQ=255) ttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCaaa < 1:11857‑M2/135‑1 (MQ=255) ttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACATTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGACGCCaaa > 2:11857‑M2/111‑245 (MQ=255) accttctttttcgtccagaaactggtcaagtatctgaggagccgatgcgccagcaccaatccgcgccagaccggcagccgcaagcccgtatctgatcttttgagttcaCCCGCCCGCCTCGTATTACGATATTCATCATAAACTTTGGGCTCATACTGAAGCTCCCCGCCCGATGCCTCCTGTAGACGCCTCGCGCGACCTTCGGGAACTAACTCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATAcc > 1:280237‑M2/109‑251 (MQ=255) ttttcgtccagaaactggtcaagtagctgaggagcagaggcgccagccccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCtgctgc < 2:253260‑M2/149‑1 (MQ=255) tccagaacctggtcatgtatctgccgagaagatgcgccagcaccaatccgcgccagaacgacagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATCTTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCATTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGATTGTGc > 1:100765‑M2/96‑250 (MQ=255) aaactggtctagaatctgaggagcagatgcgccagcaccaatcagcgccagaaaggcagccgacaggccgtatctgatcttttgcgttcaCCCGCCCGCTTCGTCTTAAGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAACAGAATACCTGCTGCTTGGGCCAgttt > 2:23576‑M2/91‑251 (MQ=255) tggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAgttttgtt > 1:47184‑M2/87‑251 (MQ=255) ctgaggagcagatgcgccagcaccaatcagcgccagcacggcagccgacaggacgtatctgatcttttgtgttcaCACGCCCACTTCGTCTTCCGATATTAATCATTACCTTAGGGATCATCCTGAAGCTACCCGCCAGACGCCTCCTGTAGACGCATAGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGa > 1:281403‑M2/76‑250 (MQ=255) gaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAAt > 1:94227‑M2/74‑251 (MQ=255) gccagcaccaatcagcaccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTc > 2:2626‑M2/61‑251 (MQ=255) cagccccaaacagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCAGCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTTTGCAAGTTGTGTTTTTGAACCGAAATACAAAAGAGCGTCAg < 2:280237‑M2/193‑1 (MQ=255) gcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACGTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAAAACACCttt < 1:284362‑M2/216‑1 (MQ=255) gccgacaggccgtatctgatcttttgtgttaaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAAAACCCCTTTAtt > 2:286975‑M2/33‑251 (MQ=255) gccgtatatgatcttctgtattcccccgcctGCTCCGTCTTAAGCTATTCATCATAAACTTTGGGATCCTTCTGCAGCAACCCACCAGATGCCTAATGTAGACGCATCACGCGACCTTCGGGACCTACCTCCCCTTTCCAGCTATACAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTCTGTTTTTGAACCGACATACACCAGACCGTCAGTTTTAAGCATTTAAAACACCTTTATTGTTAgcc > 2:195756/24‑248 (MQ=255) cgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAAAACACCTTTATGGTGAGTCAta < 1:79744‑M2/229‑1 (MQ=255) atctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGGTTTAAGCATTTAAAACACCTTTATTGTTAGTCAtaac < 1:286975‑M2/231‑1 (MQ=255) tcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAAAACACCTTTATTGTTAGTCATAACTAACAAGATAGATGtt < 2:42051‑M2/247‑1 (MQ=255) caCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAAAACACCTTTATTGTTAGTCATAACTAACAAGATAGATGTTa > 1:244454‑M2/3‑250 (MQ=255) | TGGTGTCGATAGCCTTCCAGCGTTCAAATATCTTCACTCGATTAACGCCAAGCGCTCGCTGATCAATCGCGCCACCTTCATATGTGACACGCTGAACATCGATGTTCGGGCGCTCTTTCAAAGCCCAGAATGCTTCAGTGATTAATATCGTCGCCTGCTCCTGTGTCATTCCTGGTCGACATATCCAGGCATCCAGAGCCTCACGAGCCTGTTCAGGAGTGATTTTCATTGTTCAACCGCCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAAAACACCTTTATTGTTAGTCATAACTAACAAGATAGATGTTA > NC_000913/1647408‑1647895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |