Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,299,522 Δ12,535 bp mdtPalsB mdtP, mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4299522 4312056 12535 22 [0] [0] 22 mdtP–alsB mdtP,mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42995210 (0.000)22 (0.720) 20/486 0.5 100% intergenic (‑155/+43) fdhF/mdtP formate dehydrogenase H/putative multidrug efflux pump outer membrane channel
?NC_000913 4312057 = 0 (0.000)intergenic (‑15/+44) alsB/alsR D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR

CGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGACGAAACGAAATACCGCGTGACAGCCATCACGCGGCAGACATTTTATTTTTTCTCGACGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGG  >  NC_000913/4299288‑4299769
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                        
cGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaac                                                                                                                                                                                                                                         <  1:303532‑M1/251‑18 (MQ=255)
        ccGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCATGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATGTTATGTGGGGTCATTCCCTGAGATTACGTGCGCTATGTATTCAAAACTCTGACGAAAAACAGGCTGTCGGCAGGTTTTACGTGAggtaaggggacagtaactccgcgat                                                                                                                                                                                                                                 <  2:301196‑M1/251‑26 (MQ=255)
                         gTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCGGATATTACGGGCACTATTGATTCAAAACTCGGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggtgacagtaactccgcgatggcggaattgccttttt                                                                                                                                                                                                                <  2:111260‑M1/251‑43 (MQ=255)
                                 tgcgacccgatgcgcaaTAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttattt                                                                                                                                                                                                         <  2:137358‑M1/242‑50 (MQ=255)
                                          aTGCGCACTAGGGACAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAACTCACGCCTACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcct                                                                                                                                                                                               >  2:129896‑M1/1‑192 (MQ=255)
                                                   aGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgaga                                                                                                                                                                                        >  2:73571‑M1/1‑183 (MQ=255)
                                                             cGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaaca                                                                                                                                                                             >  1:149233‑M1/1‑173 (MQ=255)
                                                                gacgacTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTGATTCAAAACTCTGACGAAAAACAGGCTGGCGTCAGTTTTGACGTGAggtaaggggacagtaacgccgcgatggcggaattacctgtttcttatttcagcgcgtctggtgagaagaaatcaacaattg                                                                                                                                                                         <  2:115090‑M1/251‑82 (MQ=255)
                                                                                      gCTCCAGTTAATCAAATCACGCCTACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaat                                                                                                                                                   >  2:284282‑M1/1‑148 (MQ=255)
                                                                                                        aCGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagctggttcaatgtt                                                                                                                                 <  1:88040‑M1/251‑122 (MQ=255)
                                                                                                         cGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttctt                                                                                                                                                                                                             <  1:195511‑M1/174‑46 (MQ=255)
                                                                                                         cGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttctt                                                                                                                                                                                                             >  2:195511‑M1/1‑129 (MQ=255)
                                                                                                          gCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgctatggcggaattacctttgtctgatttcagcgcgcctggtgagaagaaatcaacaattgcgccggt                                                                                                                                                                  <  1:276973‑M1/216‑89 (MQ=255)
                                                                                                          gCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggcattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggt                                                                                                                                                                  >  2:276973‑M1/1‑128 (MQ=255)
                                                                                                               cgcgCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgg                                                                                                                          <  1:163985‑M1/251‑129 (MQ=255)
                                                                                                                       cGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgac                                                                                                                     <  2:149233‑M1/248‑134 (MQ=255)
                                                                                                                                                                 cATTCCCTGATCTTACGGGCACTATTTATTCAAAACTCTGACGAAACACAGGCTGTCGCCAGTTTTGACGTGAggtaaggggccagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattactattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgc                                                                        >  2:276852‑M1/1‑73 (MQ=255)
                                                                                                                                                                                        atttattCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacg                                                 >  2:73132‑M1/1‑50 (MQ=255)
                                                                                                                                                                                            attCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTAGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggtgggttgtaatattcgtgccgaggcattacgacgtaataacttcg                                              <  1:278356‑M1/250‑205 (MQ=255)
                                                                                                                                                                                              tCAAAACTCTGACGAAAAACAGGCTGTCGGCAGTTTTGACGTGAggcaaggggacagtaactccgcgatggcggcattacctttttcttatttcagcgcgcctggtgagcagaaatcaacaattgcgccggttttttccatattaatattagcttgatcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtactattcttgccgaggcattacgacctaataacggcgttt                                           >  1:142042‑M1/1‑44 (MQ=255)
                                                                                                                                                                                                                             aGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattatcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaagaacggcgtttccggggctggtgagcaaataatatgatcggc            <  1:284282‑M1/251‑239 (MQ=255)
                                                                                                                                                                                                                                        gAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcctgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataactgcgtttccggggctggtgagcaaataatatgatcggccagtttcgct  <  1:188855‑M1/250‑249 (MQ=255)
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                        
CGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGACGAAACGAAATACCGCGTGACAGCCATCACGCGGCAGACATTTTATTTTTTCTCGACGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGG  >  NC_000913/4299288‑4299769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.