Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,890,411 IS1 (–) +9 bp coding (176‑184/1248 nt) tnaB → tryptophan:H(+) symporter TnaB

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1979270NA (NA)40 (1.310) 37/486 0.1 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 3890411 = 0 (0.000)coding (176/1248 nt) tnaB tryptophan:H(+) symporter TnaB
* ? NC_000913 = 3584195NA (NA)28 (0.920) 25/486 0.3 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 3890419 0 (0.000)coding (184/1248 nt) tnaB tryptophan:H(+) symporter TnaB

ACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3583974‑3584195
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATGATGCCACCTTTAGAGGAAGGCTATTTTTGTTATTGAGGATGTAGGGTAAGAGAGTGG  <  NC_000913/3890419‑3890178
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
ACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATT                                                                                                                                                                                                                       <  1:204511/251‑1
     TGGCTGGCCGCTGTATGACTCCCGCCTGAAGGGACAGCTGCACGTAATCAGCAAGCGATATACGAAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCCCGGCTGGGACGGAAGTCGCTGACGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGA‑CACTAAAACACTATCAATAAGTTGGAGTCATTACCATAATAACAATAACCCGGAATGAAGCATTGAAA                                                                                                                                                                                                                   >  2:117598/1‑250
                 GTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGAT                                                                                                                                                                                                      >  1:173580/1‑251
                         CCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAAAACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATA                                                                                                                                                                                               >  1:286828/1‑250
                         CCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCGGAATCTGAGGCAGCGCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTAGCAATAAGTTGGAGTCATTACCCGAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATA                                                                                                                                                                                               <  1:198910/250‑1
                           CGCCTGAAGGGAAAGCTGCACATAATCAGCAAGCGATCTCCGCAGCGAATTGAGCGGCATAACCTAAATCTGAAGCAGCACATGGCACGGAAGGGACGGAAGTCGATGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCAGGCATTATCTGAACA‑TAAAACACTATCAATACGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGATAAACAGGCAATGATAAGGATAAcg                                                                                                                                                                                            >  1:128223/1‑249
                                GAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACC                                                                                                                                                                                       >  2:261777/1‑251
                                                  AATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACC                                                                                                                                                                     <  2:178426/251‑1
                                                              ATATACGAAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAAC                                                                                                                                                         >  1:80443/1‑251
                                                                ATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAAC                                                                                                                                                         >  1:220053/1‑249
                                                                   aGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTTAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGT                                                                                                                                                     >  2:57337/2‑250
                                                                   CGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTA                                                                                                                                                    <  1:107115/251‑1
                                                                          AATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAA                                                                                                                                              >  1:74133/1‑250
                                                                                       AACCTGAATCTGCGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGG                                                                                                                                                      >  2:25206/1‑229
                                                                                       AACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGG                                                                                                                                                      <  1:25206/229‑1
                                                                                                                        GGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACTTACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAA                                                                                               <  1:155950/251‑1
                                                                                                                           CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAAT                                                                                            <  2:173580/251‑1
                                                                                                                                 tagaTGTCGTTCTCAAAATCGGTTTATCTTCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAG                                                                                        >  1:188905/5‑249
                                                                                                                                         GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATAAGGAATTATCTGTACC‑TAAAACAACATCAAAAAGTTGGAGTCATTACCCTAATAACAATAACACGGAATGCAGCATTGAAAACCAGGCAATGCTAAGGATAAAGGCACACCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATCACTCACCCAATTACTGTACCTGCTATACCCATAACACCCCAAAATGCAGAGTGCTTTTT                                                                              >  1:301928/1‑251
                                                                                                                                                          AGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGCGTCATTCCCCTAATAACAATAACCCGGCATGAAGCATTGAGAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTC                                                              >  2:208529/1‑250
                                                                                                                                                              GCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATG                                                           <  1:47722/249‑1
                                                                                                                                                                ATGACAAAGGCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATTCAGAGTGCGTTTTTTCAGCTTGATCAGTCATGATGC                                                       <  1:117598/251‑1
                                                                                                                                                                    CAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATGATGCCACC                                                   <  1:86931/251‑1
                                                                                                                                                                    CAAAGTAATCGGGCATTATCTGAACA‑TAAACCACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATGATGCCACC                                                   >  2:29879/1‑251
                                                                                                                                                                              GGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATGATGCCACCTTTAGAGGA                                          >  2:143023/1‑250
                                                                                                                                                                              GGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATGATGCCACCTTTAGAGGA                                          >  2:207759/1‑250
                                                                                                                                                                                GCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACCCTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATGATGCCACCTTTAGAGGAAGG                                       >  2:224809/1‑251
                                                                                                                                                                                                                      GTCATTACCCTACTAACAATAACCCGGAATGAAGCCTTGCAAACCAGCCAATGATAAGGATAAAGGCACACCCGAAAAACCAGGCACCGGCAAGATCAACAGGAAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACACCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATGATGCCACCTTTAGAGGAAGGCTATTTTTGTTTTTGGGGATGCAGGGTAAGAGAGTGG  >  2:151572/1‑251
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
ACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACA‑TAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3583974‑3584195
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATAACAATAACCCGGAATGAAGCATTGAAAACCAGGCAATGATAAGGATAAAGGCACCCCAGAAAAACCAGGCACCGGCAAGATCAACAGGTAAAGCAAACATACCTCCACCAATTACTGTACCTGCTATAACCATAACACCCCAAAATGCAGAGTGCTTTTTTTCAGCTTGATCAGTCATGATGCCACCTTTAGAGGAAGGCTATTTTTGTTATTGAGGATGTAGGGTAAGAGAGTGG  <  NC_000913/3890419‑3890178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.