| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,652,331 | 0 | T | C | 100.0% | 84.4 / NA | 23 | intergenic (+2346/+397) | ydfD/ynfP | lysis protein/protein YnfP |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/11); total (12/11) | |||||||||||
TTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGCCAT > NC_000913/1652095‑1652573 | tttCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGCCTGAGCAAAGAGCATATCATTGATGTTCACCCCAGAGAGAATggg > 1:230828/1‑250 (MQ=255) tCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGATCATATCATTGATGTTCACCTCAGAGAGTATGGca < 2:259561/250‑1 (MQ=255) ggTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCt < 1:105976/250‑1 (MQ=255) gAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCC‑CCTTTGt < 2:33722/251‑1 (MQ=255) gaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTGTGTTTTTCAACCTGAAGTGTCAGCgag < 1:404823/251‑1 (MQ=255) aTAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAAACGGGGCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGGAGAACAAAAAAACAAAAATGCA‑CCTTTGTTTTTTAAACTGAAGTGTCAGCGagagg > 1:356669/1‑250 (MQ=255) aCAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCCGGTCCTTAATCTTCTTAAGCCCGAAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGCATGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCCTTGTTTTTCAACCTGAAGTGTCAGCGAGGATAAAAAATTATGGTGAcc > 1:288647/1‑250 (MQ=255) tCAGGAGAAATTTAGCAAAAGACCGTTTCCCGGTACCAAAAACACAGGCGGGGACCCAACGGGTCAATACTTTTATTAAGCCAGCAAACGACGCCCTCCCGAGTCAGAATACATTAACCTGAATGAGCAAAGAACAAATCATTCATGTTTACCTCAGAAGGTATAGGAGAACAGGAAAACAAAAAAGCAACCTTTGTTTTT‑AACCCGAAGTGTCAGCGGGCGTAAAAAATTATGGTGCACATTTTTCCGtt > 2:140874/1‑251 (MQ=255) gTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTTAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACCTTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCAACTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCtt > 1:449751/1‑169 (MQ=255) gTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCtt < 2:449751/169‑1 (MQ=255) gTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCGTATTAAGCCAGCAATCGACGCTCGCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTGTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAAGTATGGCGACCATTTGACCGTTGACTCAATAAGGCAGACGTGGGAc < 2:80053/251‑1 (MQ=255) gTTTCACGGTACCAAAAACACAGGCGGGAACCAATCAGGGCATTCATCTTCTTAAGCCAGCAATTGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGGCAAGAGCATAACATTGATGTTTACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGGAAAAAATTATGGTGACCCTTTTACCCTTGACTCAATAAAGCAGGTGTggggc > 1:395012/1‑249 (MQ=255) ggTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAAAGCA‑CCTTTGTTTTTCAACCTGAAGGGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAAAAAGGCAggaggggggagcagcg > 1:330543/1‑235 (MQ=255) catCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATc < 2:203201/250‑1 (MQ=255) catCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATc < 2:366144/250‑1 (MQ=255) taAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATGATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGTACGGAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCgaga < 1:191121/250‑1 (MQ=255) aCGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAACAAATTATGATGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAACATCATATCCGTCGAGCCATCCTTATGCctgc > 2:361333/1‑251 (MQ=255) ccGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAAAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGc > 1:262433/1‑251 (MQ=255) aGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGAc > 1:341074/1‑192 (MQ=255) aGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGAc < 2:341074/192‑1 (MQ=255) agagCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACCTACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCa > 2:4888/1‑250 (MQ=255) atatCATTGATGTTCACCTCAGAGAGTATGGCAGAAACGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGCAGTGTCAGCGCGAGTAAACAATTATGGTGAACATTTTACCGTTGCCTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAAcc > 1:39227/1‑249 (MQ=255) aTGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAGTAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGCCAt < 1:383567/251‑1 (MQ=255) | TTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA‑CCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTACCGTTGACTCAATAAGGCAGATGTGGGACGCAGCGATAAAACGTGCCGGACTCCGCCATCGAAAATCATATCAGTCGAGACATACTTATGCCTGCTGGTCGCTGACAGCTGGTGCTAACCCGGCATTTATAGCAAACCAGATGGGCCAT > NC_000913/1652095‑1652573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |