| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,313,864 | Δ16,405 bp | yjdP–rdcB | 18 genes yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnD, phnC, yjdN, yjdM, rdcA, rdcB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4313864 | 4330268 | 16405 | 24 [0] | [0] 24 | yjdP–rdcB | yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnD,phnC,yjdN,yjdM,rdcA,rdcB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4313863 | 0 (0.000) | 24 (0.520) | 24/486 | 0.8 | 100% | intergenic (+64/‑5) | rpiB/yjdP | allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B/protein YjdP |
| ? | NC_000913 | 4330269 = | 0 (0.000) | intergenic (+31/‑233) | rdcB/proP | regulator of diguanylate cyclase RdcB/osmolyte:H(+) symporter ProP | |||||
ACCATCAGTGGTTTGCCTCTTCGACCGTTCCGACGGGCGGGGAGCATGCTGATTTTTTAAGTTGGCTGGGAAAGTGGACCACGGCAGATAAACAACCCGTTTGCTGGTCAGTGACCCAACGCTGGCAAACTGTCGCGCTGGGGATGCCACGACTCTGTTCAGCGCAGCGTCTGGCGGGGGCAATGCTCGAGGAAATCTTCTCTGTAAATTTGGCGTAAATAATCAGTTACATCAATGAGTCCTAAACGAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTATGC > NC_000913/4330021‑4330505 | accttattacgagcacctttcgcggcagcataaagccaccaacgcgctggcttttgattcaagagtggttggcatcgaactggcaaaaatgattgtggatgcgaggctgggcgaacagtacgaaggcggtcgtcatccacaccgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagcaatgattaatgtggatagagtttctttttcaggttgaa > 2:41056‑M2/249‑250 (MQ=255) attccgcgcaactttcgcggcagcataacgacaccaacgtgctggcttttggttcacgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCAt > 2:52241‑M2/244‑251 (MQ=255) caactttcgcggcagcataacgacaccaacgtgctggcttttggttcacgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGa > 1:59957‑M2/236‑249 (MQ=255) tttcgcggcagcataacgacaccaacgtgctggcttttggttcacgagtggttggcctcgaactggaaaaaatgattgtggatgcgtggctgggcgcacagcacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaacttgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTg > 1:216207‑M2/232‑250 (MQ=255) cgcggcagcataacgaccccaacgtgctggcttttggctcccgagacgaaggcctcgaactggcaaaaatgattgtggatccgtggctgggcgcccagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcctggctgagtaatgattaatgtggatagagtttctttttgtggttgAAATCCATGTGTGAAGTTGATc > 2:441366‑M2/229‑250 (MQ=255) cggcagcataacgacaccaacgtgctggcttttggttcacgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATcac > 1:155737‑M2/227‑250 (MQ=255) tttggttcacgagtggttggcctcgaactggcaaaaaggattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggagtcgattacggcaatagagcagcggagaaattgagattcatccacttcttgcatggatgagtaatgattaatgtggatagagtttcttttggaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTc < 1:441366‑M2/54‑1 (MQ=255) acgagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGc < 1:334461‑M2/63‑1 (MQ=255) gagtggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGccc < 2:432507‑M2/65‑1 (MQ=255) gggttggcctcgaactggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAAt < 2:59957‑M2/68‑1 (MQ=255) actggcaaaaatgattgtggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACt > 1:336857‑M2/171‑251 (MQ=255) ggatgcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGGGTGAAGTTGATCACAAAGTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTc < 2:173219‑M2/98‑1 (MQ=255) gcgtggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAATGTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACGGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTa < 1:71570‑M2/102‑1 (MQ=255) ggctgggcgcacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaagagagcagcggagaaattgagattcatccacttcttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTTCATTCCTTAACCg < 1:380691‑M2/106‑1 (MQ=255) cacagtacgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACAGTCCTTAACCGGAGGGTGTaa < 2:209232‑M2/116‑1 (MQ=255) cgaaggcggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGATGGTGTAAGCAAAcc < 1:120725‑M2/123‑1 (MQ=255) cggtcgtcatcaacaacgcgtggaggcgattacggcaatagagcagcggcgaaattgagattcatccactacttgcatggatgagttatgattaatgtggatagagtttcttttttaggttgAAATCCATGTGTGAAGGTGATCACAAATTTAGACACTGGTAGGGTAAAACGGTCCATAACTGCCAAAGTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGGGTCAGCAAACCCGCTAc > 2:287766‑M2/123‑251 (MQ=255) cgattacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCa < 2:336857‑M2/155‑1 (MQ=255) attacggcaatagagcagcggagaaattgagattcatccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAAt < 2:155737‑M2/157‑1 (MQ=255) ccactacttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTAAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTc > 2:329425‑M2/58‑251 (MQ=255) acttgcatggatgagtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCg > 1:9083‑M2/53‑251 (MQ=255) agtaatgattaatgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATGCCTGAACCGGAGGGTGTAAGCAATCCCTCTACGCTTGTTTCTGAGATTGCGTCCTGCAATTCCCGGTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTTGCGTTTGCGGAAATgg < 1:25781‑M2/212‑1 (MQ=255) atgtggatagagtttctttttgaggttgAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGCTTGCATCCTGCAATTCCCGATCCCCTTTTGCGGCCGTCGCGCTGCTTTTTCTGGCGGTTGCGGAACTGGGCCACCTCTGc > 2:163919‑M2/29‑251 (MQ=255) ttttgaggttgAAATCCATGTGTGAAATTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGGTTGATTGTACATTCCTTAACCGAAGGGTGTAAGCAAACCCGCGACGCGTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCGCTTTTGGGGCCGTCGCGCTGTTTGTTCGGGCGGTGGCGGAAATGGGGGAATTCTGCGAGGAAATCTATGc < 2:189643‑M2/237‑1 (MQ=255) | ACCATCAGTGGTTTGCCTCTTCGACCGTTCCGACGGGCGGGGAGCATGCTGATTTTTTAAGTTGGCTGGGAAAGTGGACCACGGCAGATAAACAACCCGTTTGCTGGTCAGTGACCCAACGCTGGCAAACTGTCGCGCTGGGGATGCCACGACTCTGTTCAGCGCAGCGTCTGGCGGGGGCAATGCTCGAGGAAATCTTCTCTGTAAATTTGGCGTAAATAATCAGTTACATCAATGAGTCCTAAACGAAATCCATGTGTGAAGTTGATCACAAATTTAAACACTGGTAGGGTAAAAAGGTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTATGC > NC_000913/4330021‑4330505 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |