New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	37 (0.800)	34/486	0.4	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 2406787	0 (0.000)					intergenic (‑146/‑774)	lrhA/alaA	DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA

AGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCC  >  NC_000913/2406540‑2407027                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                 aGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCGCTTATCATATATTATCACTTACTGGCGGCTCATATTGAGCTGGGTAATGCTTTGCACACACAAACAAGCAATTCCATTTGTAAGGTGCCTCCCTGGCAGTTGCATCCGGAATCCGTACTAAAGTAAAAAGTCATATGATTTTCACTAAAAAAGCggt                                                                                                                                                                                                                                               >  2:416020‑M2/1‑248 (MQ=255)                      aGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAACAGATCGCGGTCGAGGTTAATTATCGGACGATTTGCACTTATAATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTTCCTCCCTGGCTGTTTCATCCGGAACCCGGACGAAAGTAAAACTGCATCTGCGTTGCACTAAAAAAGCggtaatgactccaacttcttg                                                                                                                                                                                                                             <  2:199158‑M2/248‑22 (MQ=255)                         gtTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagt                                                                                                                                                                                                                        >  2:339243‑M2/1‑224 (MQ=255)                                   gcaacagcaacaAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGCAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaccttattgatagtgttttatgttc                                                                                                                                                                                                             <  2:379089‑M2/251‑38 (MQ=255)                                           aacaaATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatg                                                                                                                                                                                                     >  2:316384‑M2/1‑206 (MQ=255)                                            acaaATGTTCTCAGCAGCTCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAACAAAGCggtaatgactccaacttattgatagtgatttatgttcagataatgc                                                                                                                                                                                                    <  1:332669‑M2/251‑47 (MQ=255)                                             caaATGTTCTCAGCAGATCGATGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGGTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCtgtaagggcgccaacttattgatagtgttttatgttcagataatgcc                                                                                                                                                                                                   >  1:424604‑M2/1‑204 (MQ=255)                                               aaTGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtagtgactccaacttattgatagtgttttatgttcagataatgcccg                                                                                                                                                                                                 <  2:14363‑M2/251‑50 (MQ=255)                                                       cagcagATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAACAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                                                                                                                         <  1:83546‑M2/251‑58 (MQ=255)                                                                      gaggtTCATTATCAGACGATTTGCAATTATCATATATTATCACTTACTGGAGCCTCATACAGAGCTGGTTAAAGCTGTGCACACACCAACAAGCAATTCCATTTGTCATGTGCCTCACTGGCAGCTTCATCCGGAACCCGGACGACAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagctaatgcccgatgactttgtcatgcagctccac                                                                                                                                                                          <  2:211619‑M2/251‑73 (MQ=255)                                                                      gaggtTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCCGTTTCATCTGGAACCCGGACGAAGGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactcccacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                                                                                                                          <  1:44247‑M2/251‑73 (MQ=255)                                                                                     aCGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacg                                                                                                                                                            <  1:409782‑M2/250‑87 (MQ=255)                                                                                            gCACTTATCATCTATTATCACTTACTGACGGCTCATACTGAGCTGGTTAATCCTATGCAAACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaataactccaacttattgatagtgttttatgttcagatcatgcccgatgcctttgtcatgcagctccacagattttgagaccgcacgcga                                                                                                                                                     <  2:423852‑M2/250‑94 (MQ=255)                                                                                                ttATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc                                                                                                                                                <  1:2814‑M2/251‑99 (MQ=255)                                                                                                 tATCATATATTATCACTTACTGGCGGGTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacgtattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc                                                                                                                                                 >  2:226809‑M2/1‑152 (MQ=255)                                                                                                                          gcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                                                                                                                      <  2:45623‑M2/251‑125 (MQ=255)                                                                                                                                         gTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgc                                                                                                       >  2:409782‑M2/1‑112 (MQ=255)                                                                                                                                             aTGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttatt                                                                                                                                                                                                                              <  2:11635‑M2/128‑21 (MQ=255)                                                                                                                                             aTGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttatt                                                                                                                                                                                                                              >  1:11635‑M2/1‑108 (MQ=255)                                                                                                                                               gCTGTGCACACACAAACAAGCAAGTCCATTTGTAATGTGCCTCACTGGCAGTTTCATCCGGAACCCGGACGAAAGGAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgacaggtgctgcctcagattcaggttatgccgctca                                                                                                 >  2:83546‑M2/1‑106 (MQ=255)                                                                                                                                                            aaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtat                                                                                    <  1:62453‑M2/251‑159 (MQ=255)                                                                                                                                                                             tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattac                                                                    >  2:37996‑M2/1‑76 (MQ=255)                                                                                                                                                                                   gtgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagc                                                             <  1:94076‑M2/251‑182 (MQ=255)                                                                                                                                                                                   gtgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacaacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagc                                                             <  1:398706‑M2/251‑182 (MQ=255)                                                                                                                                                                                         cccTGTCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCtgtaatgactccaacttattgatagtgttttatgttcagagaatgcccgatgacgttgtcatgcagctccaccgatttggagaacgacagggacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatttcgcttgctgattacgtgcagctttcc                                                        >  2:450868‑M2/1‑64 (MQ=255)                                                                                                                                                                                             ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATAGGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttaagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttca                                                   >  1:379089‑M2/1‑60 (MQ=255)                                                                                                                                                                                                        ccGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattc                                         >  1:14363‑M2/1‑49 (MQ=255)                                                                                                                                                                                                                cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcagacagcgg                                >  1:132896‑M2/1‑41 (MQ=255)                                                                                                                                                                                                                  gACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggcc                              >  1:293878‑M2/1‑39 (MQ=255)                                                                                                                                                                                                                  gACGAAAGTAAAAAGGCATATGATTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagccccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattctctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggcc                              >  2:266118‑M2/1‑39 (MQ=255)                                                                                                                                                                                                                       aaGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccacattattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaacgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgcagctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggcttcctaccgcggccagcc                          <  2:321672‑M2/250‑217 (MQ=255)                                                                                                                                                                                                                             aaaTGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtc                   >  1:164962‑M2/1‑28 (MQ=255)                                                                                                                                                                                                                               aTGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcat                 >  2:398706‑M2/1‑26 (MQ=255)                                                                                                                                                                                                                                        aGTTGCACTAAAAAAGAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcac        <  2:322416‑M2/251‑235 (MQ=255)                                                                                                                                                                                                                                           tGCACTAACAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccac     <  2:153182‑M2/251‑238 (MQ=255)                                                                                                                                                                                                                                            gCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgccccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccctttcaccacg    <  2:12092‑M2/251‑239 (MQ=255)                                                                                                                                                                                                                                              aCTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgtc  <  1:410594‑M2/251‑241 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                 AGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCC  >  NC_000913/2406540‑2407027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.