New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	1 (0.030)	16 (0.470)	14/486	1.1	94.1%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

TCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACC  >  NC_000913/1979032‑1979475                                                                                                                                                                                                                                                |                                                                                                                                                                                                             ggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttgtctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagctgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGtata                                                                                                                                                                                                   >  1:337690‑M1/240‑251 (MQ=255)          cgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATAc                                                                                                                                                                                           >  1:194695‑M1/231‑250 (MQ=255)           gccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggccgaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACtt                                                                                                                                                                                         <  1:123542‑M1/22‑1 (MQ=255)            ccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcgccttccttaaCAGAAATGTATAAGTCATACttt                                                                                                                                                                                        >  2:21101‑M1/229‑251 (MQ=255)            ccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGGATAAGTCATACttt                                                                                                                                                                                        >  1:96008‑M1/229‑251 (MQ=255)              aaTGATTTGCTGGTGCGTACCTGGTTGAGAAGCGGGGTAAGTGAACTGCAGTTGCCAGGTTTTACTGCAGTGAGAGCAGAGATAGCGCTGATTACCGGCGTTGGTTTTGCCGTTACGCACCACCCCGTCAGTAGCTTAACAGGAGGGACAGCTGAGAGAATCAGTAGCCACTGTAGCACCTCAAAAACACCATCATACACTGAAGCAGTAAGGTGACAGCATCAcccttttaacaatagtttcactccttg                                                                                                                                                                                      <  2:141426/251‑25 (MQ=11)                ccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACttttgtt                                                                                                                                                                                    >  2:123542‑M1/225‑251 (MQ=255)                                                              tttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                                                                                                                       >  2:41141‑M1/179‑250 (MQ=255)                                                                                  tccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat                                                                                                                   <  2:212803‑M1/92‑1 (MQ=255)                                                                                   ccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcattaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                                                                                                                  <  1:14587‑M1/93‑1 (MQ=255)                                                                                          ggacaagaaaatctctttgctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggcgccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAATCATTAATAATCGAAAt                                                                                                          >  1:118823‑M1/151‑251 (MQ=255)                                                                                                               ggtctgacggcgcttactgctgaattcgctgtcggcggagggaagttgatggcgcatgatgacccctgttgtatggatccagatgacaaacatgatctcatagcagtgacttgttcgcagcttccttaaCATAAATGTATAAGGCCTACTTTTGGTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTATCAAGCAAAAACGAAACAGGAATAATCCAAATGGGATGTTTCGCACAGtcata                                                                                     >  2:19988‑M1/130‑249 (MQ=255)                                                                                                                                 gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata                                                                    <  1:6457‑M1/139‑1 (MQ=255)                                                                                                                                      attcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc                                                              <  1:308192‑M1/145‑1 (MQ=255)                                                                                                                                                           gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCa                                         >  2:115459‑M1/86‑251 (MQ=255)                                                                                                                                                                                         ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGCATAAGTCATACTCTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCCCTTTCATGCAATACCAGATAAGCTATTTTTAAACAg           >  2:135509‑M1/56‑251 (MQ=255)                                                                                                                                                                                                   gacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAcc  >  1:202952‑M1/46‑250 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                             TCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACC  >  NC_000913/1979032‑1979475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.