| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,522 | Δ12,535 bp | mdtP–alsB | mdtP, mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299522 | 4312056 | 12535 | 39 [0] | [0] 39 | mdtP–alsB | mdtP,mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299521 | 0 (0.000) | 39 (0.750) | 36/488 | 0.4 | 100% | intergenic (‑155/+43) | fdhF/mdtP | formate dehydrogenase H/putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4312057 = | 0 (0.000) | intergenic (‑15/+44) | alsB/alsR | D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR | |||||
CGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGACGAAACGAAATACCGCGTGACAGCCATCACGCGGCAGACATTTTATTTTTTCTCGACGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGC > NC_000913/4299288‑4299740 | cGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACTTGAggtaaggggacagtaac < 1:456932‑M1/251‑18 (MQ=255) gacgacCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACATGAggtaaggggacagtaactccgcgatggcgga > 1:100238‑M1/1‑218 (MQ=255) gacgacCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACATGAggtaaggggacagtaactccgcgatggcgga < 2:100238‑M1/249‑32 (MQ=255) gacCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcg > 1:205622‑M1/1‑215 (MQ=255) gacCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaacgccgcg < 2:205622‑M1/238‑24 (MQ=255) aTTTTGCAACCTGATGCGCAAGAGGGGCAAACCGTGACGACTTGTTTCATCGGTCTCGCTCCATTTAATCAAATCACGCATACTCGCTCTCGACTAGAGTATGCATCTTTTATGCCACATTTTAGGTGGGGTCATTCCCTGATAGTACGGGCACTATTTATTCAGAACGCTGACGAAAAACAGGCTGGCTTCAGTTTTGGTGTTGggtaaggggacagtaactccgcgatggcggaattacctttttctta < 1:478519‑M1/251‑47 (MQ=255) ttGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatt < 1:420561‑M1/250‑49 (MQ=255) tGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactcctcgatggcgtaattacttttttcttattt < 1:412882‑M1/250‑50 (MQ=255) gCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGTTCTCGCTCCAGTTAATCAAATCACGCATTCGCGCTCTCGACTACAGTATGCATCTTCTATTCCACATTTTATGTGGGGTCATTCCCTGATCTTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGGTTTGACGTTAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttca < 1:478‑M1/251‑52 (MQ=255) gCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTGTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACAGTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattaccttttgcttatttc < 2:53511‑M1/250‑51 (MQ=255) gcgcAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctgg > 2:201484‑M1/1‑190 (MQ=255) cAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCCCTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatc > 1:506009‑M1/1‑178 (MQ=255) aaaCCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTGTGACGTGAggtaaggggacagtaacgccgcgatggcggaattacctttttct < 1:443198‑M1/221‑45 (MQ=255) aaaCCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATAAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttct > 2:443198‑M1/1‑177 (MQ=255) acgacTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgc > 1:367414‑M1/1‑169 (MQ=255) acgacTTTTTTCATCGGTCTCGCTCAAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgc > 1:398898‑M1/1‑169 (MQ=255) gacgtttttcatcGGTCTCGCTCTAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCAGCTTTTATGCCACATTTTATGTGGTGTCATTCCCTGATATTACGTGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTTAgttaaggtgacagtaactccgcgatggcggaattaccttttgcttatttcatcgcgcctggtgggaaggaatcaacaattgcgc < 2:212095‑M1/247‑85 (MQ=255) tttttCATCGGTCTCGCTCCAGTTAATCAACTCACGCCTACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaatgacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccg < 2:117918‑M1/249‑87 (MQ=255) aGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattag < 2:120026‑M1/251‑109 (MQ=255) aatcaaatcaCGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTGATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctgtttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttg < 2:155556‑M1/251‑113 (MQ=255) caaatcaCGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaatggcgccggttttttccatattaatattagcttgtt < 2:15258‑M1/250‑115 (MQ=255) gACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacag > 1:74222‑M1/1‑114 (MQ=255) aCTACAGAATGCATCTTTTATGCCACATTTTATGTGGGGCCATTACCTGATATTACGGGCACTATTTATTCAACACTCTGCCGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggcattacctttttcttatttcagagcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagatgggcgacagcg > 1:265767‑M1/1‑113 (MQ=255) cTACAGTATGCATCTTTTATGCCACATTTTCTGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagac > 2:141027‑M1/1‑112 (MQ=255) cATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcg > 1:136677‑M1/1‑102 (MQ=255) tCTTTTATGCCACATTGTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCGGTTTTGACGTGAggtaaggggacagtaactccgctatgtcggaattacctttttcttagttcagcgcgcctggtgagaagaaatcagcaattgcgccggttttttccatatgaagagtatctgggtcaatgttgagctgggcgacagagacaaaaaaagcgt < 1:223654‑M1/250‑151 (MQ=255) tGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagca > 1:23229‑M1/1‑93 (MQ=255) tCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAACCAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggcattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccg > 1:515910‑M1/1‑70 (MQ=255) gATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcat < 1:109393‑M1/251‑187 (MQ=255) cACTATTTATTCAAAACTCTGACGAAAAACAGGCGGTCGTCAGGTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcgtatttcagcgcgcctggtgagaagaaagcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaataggcttgccgaggcattacgacctaat < 2:506009‑M1/251‑198 (MQ=255) aCTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttctgcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgtgcaatgtttagctggtcgacagagacaaaaaaagcgtccagcaaggttggttataagattcttcccgaggcattacgacctaata < 2:265767‑M1/251‑199 (MQ=255) atttattCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaatggcgccggttttgtccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacg < 1:43484‑M1/251‑202 (MQ=255) ttCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtt > 2:446496‑M1/1‑45 (MQ=255) gACGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctgg > 2:451557‑M1/1‑34 (MQ=255) cGAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccgggtctggtg < 1:384221‑M1/251‑220 (MQ=255) gAAAAACAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggcattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggttggttgtaatattcttgccgaggcattacgacctaataacggcgtttccggggctggtg > 1:282994‑M1/1‑31 (MQ=255) aaaCAGGCTGTCGTCAGTTTTGACGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagcgcgcatggtgaggagaaatcaacaattgcgccggttttttccatattact > 1:242557‑M1/1‑28 (MQ=255) cGTGAggtaaggggacagtaactccgcgatggcggaattacctttttcttatttcagagcgcctggtgagaagcaatcaacaattgcgccggttttttccatattaatattagcttgttcaatgttgagctgggcgacagagacacaaaaagcgtccagcaaggt > 2:472181‑M1/1‑5 (MQ=255) cGTGAggtaaggggacaggaactccgcgatggcggaattacctttttcttatttcagcgcgcctggtgagaagaaatcaacaattgcgccggtgttttccatattaatattagcttgttcaatgttgagctgggcgacagagacaaaaaaagcgtccagcaaggt < 1:472181‑M1/165‑161 (MQ=255) | CGATTTTGCCGTTATCGACGACCAGGTTGATTTTGCAACCTGATGCGCAATAGGGGCAAACCGTGACGACTTTTTTCATCGGTCTCGCTCCAGTTAATCAAATCACGCATACGCGCTCTCGACTACAGTATGCATCTTTTATGCCACATTTTATGTGGGGTCATTCCCTGATATTACGGGCACTATTTATTCAAAACTCTGACGAAAAACAGGCTGTCGTCAGTTTTGACGTGACGAAACGAAATACCGCGTGACAGCCATCACGCGGCAGACATTTTATTTTTTCTCGACGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGC > NC_000913/4299288‑4299740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |