New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2407180 =	0 (0.000)	45 (0.870)	39/486	0.3	100%	intergenic (‑539/‑381)	lrhA/alaA	DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA
	?	NC_000913	3583428 =	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

AGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAACCTTTTATTTATAAGGGTCATTGCGAATTATCTGATGCAAAGTTATGTTATGTTAGGCAAAGTAATCTTCTATTATTAATAAGCACATCAAAACCTTTTTGAATATTAAATAATAATTAATTAGCATCATCCTCATTCATTAATTCCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGTTAT  >  NC_000913/2406937‑2407423                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                    ccattcatggccatatcaatgattttctggtgcgtaccgggttgagaatcggtgtaagtgaactgcagttgccatgtttgacggcagtgagagcagagatagcgctgatgtccggcggtgctttggccgttacgcgccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagttacgggagcaccgcaaaaacaccatcattcactaaatcagtaagttggcagcatcaccCGCTTAAc                                                                                                                                                                                                                                              >  1:491061‑M1/244‑251 (MQ=255)      catggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAg                                                                                                                                                                                                                                         >  2:138126‑M1/239‑251 (MQ=255)             atatcaatgattttatcgtgcgtaccggcttgagacgcggtgtacgtgaactgcagttgccatgttttacggcagtcagagacgagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaccaggagggacagctgacagaaacagaagccactggagcacctcaaaacaaccctcatacactaaatccgtaagttggcagcatcacccgcttaacaaacgtttcccc                                                                                                                                                                                                                                  <  2:55799‑M1/20‑11 (MQ=255)                 caatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCt                                                                                                                                                                                                                               >  1:509099‑M1/228‑250 (MQ=255)                  aatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTg                                                                                                                                                                                                                             <  1:63559‑M1/25‑1 (MQ=255)                     gattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGcc                                                                                                                                                                                                                           >  1:88824‑M1/224‑250 (MQ=255)                             ggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTg                                                                                                                                                                                                                    >  1:313072‑M1/216‑249 (MQ=255)                                         gttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggcgggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGaa                                                                                                                                                                                                       <  1:272423‑M1/47‑1 (MQ=255)                                            gagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgcgagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCCTTGCGACACCTCGGAAatc                                                                                                                                                                                                    <  1:96286‑M1/50‑1 (MQ=255)                                                         agtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTaaa                                                                                                                                                                                      >  1:62990‑M1/188‑251 (MQ=255)                                                          gtgaactgcagtggccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcaggaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACTCCTCGGAAATCATCACGCAGTTAAAc                                                                                                                                                                                     >  2:456469‑M1/187‑251 (MQ=255)                                                                      tgccatgttttacggcagtgcgagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtcgctgaacaggagggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATg                                                                                                                                                                          <  1:459617‑M1/76‑1 (MQ=255)                                                                            gttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAat                                                                                                                                                                   <  1:415645‑M1/83‑1 (MQ=255)                                                                            gttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAat                                                                                                                                                                   <  1:128004‑M1/83‑1 (MQ=255)                                                                            gttttacggcagtgagagcagagatagcgcggatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgagagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATATGTTCACACGGTGCCCCCATTGCGACTCCTCGGAAATCATCTCGCAGTTAAACTCTCCGTAATGAGGAAat                                                                                                                                                                   >  1:509300‑M1/169‑251 (MQ=255)                                                                             ttttacggcagtgagagcagagatagcgctgatgtccggaggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTCACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAat                                                                                                                                                                   <  1:320960‑M1/83‑1 (MQ=255)                                                                                tacggcagtgagagcagagatagcgctaatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACGCCTTGCCCCCAGGGCGACACCTCTGAAATCAGCACGCAGTTAAGCTCGCCGGAATTAGGAAATatc                                                                                                                                                                >  2:502974‑M1/165‑250 (MQ=255)                                                                                   ggcagttagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcagacactagatcagtaagttggcagcatcaccCTCTTAACAATAGTGTCTCACCTTGCGCCCATTGCGATGCCTTGTAAATGATTACGCAGTTAAACTCTCCGTAATGAGGAAATatcatca                                                                                                                                                            >  1:285789‑M1/162‑251 (MQ=255)                                                                                       gtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATcgc                                                                                                                                                        >  2:397970‑M1/158‑251 (MQ=255)                                                                                        ggagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATcgcg                                                                                                                                                       >  2:320960‑M1/157‑251 (MQ=255)                                                                                                gagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCAtt                                                                                                                                                <  1:141488‑M1/102‑1 (MQ=255)                                                                                                gagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAAGATCATCATCGCGTTTCATTa                                                                                                                                               >  1:117206‑M1/149‑251 (MQ=255)                                                                                                gagatagcgctgatgtccggcggtgcttttgccgttacgcaacaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTa                                                                                                                                               >  1:23622‑M1/149‑251 (MQ=255)                                                                                                aagatagcgcggatggcctgcggttcttgtgccgtgacgcaccaccccgtcagtagctgaacatgagggacagctgatagaaacggaagccactggagcacctcaaaaacaccatcatactctaaatcaataagttggcagcatcaccCGCTTAACAATAGTTTCACTCCTGGCCCCCAGTGCGACACCTCTGAAATCATCACGCAGTTAAACTCGCCGTAATGATGAAATATCATCATCTCGGTTCATTa                                                                                                                                               >  2:475829‑M1/149‑251 (MQ=255)                                                                                                                  ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAgg                                                                                                                             >  1:471044‑M1/131‑251 (MQ=255)                                                                                                                     ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCAt                                                                                                                          >  1:125687‑M1/128‑251 (MQ=255)                                                                                                                     ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTGAAATGAGGCAt                                                                                                                          >  2:328411‑M1/128‑251 (MQ=255)                                                                                                                                cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAAt                                                                                                               >  1:131693‑M1/117‑251 (MQ=255)                                                                                                                                    acgccccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcgtcaccCGCTTAACAATAGTGTCACACCTTGCCCCCATTGCGACACCTCTGAAATCAGCACGCAGTTAAACTGTCCTTAATGAGGAGATATCAGCATCGCGTGTCATTAGTGGATTCTTAAATGGGTCAGTTTCGCACAATTATc                                                                                                           >  2:60967‑M1/113‑251 (MQ=255)                                                                                                                                          caccccgtcagtcactgaacaggagggacagctgatagaacaagaagcccctggagcacctcaaacacaccatcatccactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACCCCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAATTGAGGCATTTTCACACAATTATCTTAc                                                                                                       <  2:318494‑M1/143‑1 (MQ=255)                                                                                                                                          caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTAc                                                                                                       <  1:95493‑M1/143‑1 (MQ=255)                                                                                                                                                              aggaggtacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcagcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCAGCATCGCGTTTCATTAGTGAATTCTTAAATTAGGCATTTTCACACAATTATCGTACATATAAAAAAACCATACTTACa                                                                                 >  2:443943‑M1/87‑251 (MQ=255)                                                                                                                                                                     acagctgatagaaacagaagccactggagcacctcaaaaacgccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCAGTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAAGATCATCAGCGCGTTTCATTAGTGAATTCTTAAATGGTGCATATTCACACAATGATCTTACAGATAAAAAATCCAGACTTACAATTAAGa                                                                          >  1:35156‑M1/80‑251 (MQ=255)                                                                                                                                                                       agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGCAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAAt                                                                        <  2:449883‑M1/174‑1 (MQ=255)                                                                                                                                                                               gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACaa                                                                >  1:176992‑M1/70‑251 (MQ=255)                                                                                                                                                                                  acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTc                                                             >  2:141488‑M1/67‑251 (MQ=255)                                                                                                                                                                                  acagaagccactggagcacctcaaaaacaccatcatacactaaatcagcaagttggcagcatcaccCGCTTAACAATCGTTTCACACCTTGCCCCCATTGCGACACCTCGGCAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACACTTAAGAATCAGAACAATTc                                                             <  1:287805‑M1/185‑1 (MQ=255)                                                                                                                                                                                          cactggagcacctcaaaaaccccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACtatata                                                     >  2:56927‑M1/59‑251 (MQ=255)                                                                                                                                                                                                  cacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCa                                             >  2:158784‑M1/51‑251 (MQ=255)                                                                                                                                                                                                                   cataccctaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACAcc                            <  1:154005‑M1/218‑1 (MQ=255)                                                                                                                                                                                                                    atacactaactcagtaagttggcagcatcaccAGCTTAACACTAGTTTCACCCCTTGCCACCATTGCGCCACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATCACATTGCATGTAAAGCATATACACCt                           <  2:183927‑M1/219‑1 (MQ=255)                                                                                                                                                                                                                            aatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTAttt                   >  1:105402‑M1/25‑251 (MQ=255)                                                                                                                                                                                                                            aatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATGGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGTAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGATGCATTTTCACACAATTATCTTACAAATAAAAAAACCAGACGTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACGCCTCATTAttt                   >  2:459617‑M1/25‑251 (MQ=255)                                                                                                                                                                                                                                   aagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCatt            <  1:512791‑M1/234‑1 (MQ=255)                                                                                                                                                                                                                                             catcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCACCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGttat  >  2:415645‑M1/8‑251 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                    AGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAACCTTTTATTTATAAGGGTCATTGCGAATTATCTGATGCAAAGTTATGTTATGTTAGGCAAAGTAATCTTCTATTATTAATAAGCACATCAAAACCTTTTTGAATATTAAATAATAATTAATTAGCATCATCCTCATTCATTAATTCCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGTTAT  >  NC_000913/2406937‑2407423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.