New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	1 (0.020)	34 (0.660)	30/488	0.6	97.1%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

AACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAA‑ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAA  >  NC_000913/1979024‑1979503                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                         gtttcccccggataaggaaaccggccattaccagccttggggtaaaccgacccgatgacttcaaccatgttttgcaatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgacttcactgtcggcgaaggtaaggtgatgactcatgatgaaacctgttctatggctccaggtgacaaacatgatatcatatcagggaattgttcgcaccttccttaaCAt                                                                                                                                                                                                                                        <  2:482735‑M1/3‑1 (MQ=255) gtttccagcgtgtaaggtcgcgtgccattagcagccttgggtgaaagcggctcgatgacttccatcatgttttgccatggcagaatcggcttcatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgacgcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCAt                                                                                                                                                                                                                                        >  2:312088‑M1/249‑251 (MQ=255)         cggataaggtcgccggccattaccagccttggggtaaaacggctctatgacttccaccatgtttggccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGtat                                                                                                                                                                                                                                >  1:230541‑M1/241‑251 (MQ=255)                cATATCACTGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTACGTGAAATGCCGTTGCCATGTTTTCCGGCAGTGAGAGCAGGGCTAGCGCTGATGTCCGGCGGTGCTTTTGACGTTACGCCCCACCCCCTCAGTAGCTGGACAGGAGGGACAGCTGATCGGAAAAGAAGCCACTGGTGGCCCTCAAAAGAAACC‑TCATCCACCAAATCCGTACGTTGGCAGCATCAcccgcttaaaaatagtttcac                                                                                                                                                                                                                        >  2:35156/1‑233 (MQ=2)                        gccattaccagccttggggcacaccggctcgatgatttccaacctgttttgccatggcagcatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattccccgtcggcgaaggtaagttgatgactcctgatgaaccctgttctatggctccagctggccaacatgatctcatatctgggacttgttcgcaccttccttaaCATTAatgtattagtccgttaggacg                                                                                                                                                                                                                 <  2:331737‑M1/26‑11 (MQ=255)                        gccattaccagccgtggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatcgctttgctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaacccttttctatggctccagagtacaaacaggatctcagatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTc                                                                                                                                                                                                                           >  1:331737‑M1/226‑241 (MQ=255)                           attaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACttttgtttt                                                                                                                                                                                                              <  1:308492‑M1/29‑1 (MQ=255)                              accagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTggg                                                                                                                                                                                                           <  1:382219‑M1/32‑1 (MQ=255)                                cagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGgtg                                                                                                                                                                                                         <  1:171796‑M1/34‑1 (MQ=255)                                   ccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTAt                                                                                                                                                                                                      <  1:107003‑M1/37‑1 (MQ=255)                                      tggggtaaaccggctcgatgactgccaacatgttttgccatggcagaatctgctccatgcgggacaagaaaagcgctttgctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTGTTGGGTGTAtt                                                                                                                                                                                                     >  2:281770‑M1/212‑249 (MQ=255)                                      tggggtaaaacggctcgatgacttccaccatgttttgccatggaagactctgctccatgcgggacaagcaaatctcttttccggtctgacggcgcttaccgctgaattcactgtcggcgaaggtaagttgctgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggccttgttcgaaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                                                                                                                                                   <  1:51754‑M1/40‑1 (MQ=255)                                              aacggctcgatgacttccaccatggtttgccatggcagaatctgctccattcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagtggatgactcatgatgaaccctgtgctatggctccagatgacaaacatgatcgcatatcatggacttgttcgcaccttccttaaGGTAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTTGATCTGtt                                                                                                                                                                                           >  2:465078‑M1/204‑251 (MQ=255)                                                       atgacttccacaatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                                                                                                                  <  2:465147‑M1/57‑1 (MQ=255)                                                          acttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgtcaaacatgatctcatatcagggacttgttcgcaccttccgtaaCAGAAATGTATAAGTCAGTCGTTTGTTTTGGGTGTATTTCAATCTGGTAAAAGGTTTTTc                                                                                                                                                                               >  2:487048‑M1/192‑251 (MQ=255)                                                                                             catgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccatatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGTGTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                                                                                                            >  1:482735‑M1/157‑251 (MQ=255)                                                                                                                  ttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                                                                                                        <  1:21410‑M1/115‑1 (MQ=255)                                                                                                                    ttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCgcacac                                                                                                                      >  2:308492‑M1/134‑249 (MQ=255)                                                                                                                      ctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                                                                                                                    <  1:101698‑M1/119‑1 (MQ=255)                                                                                                                      ctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                                                                                                                    <  2:276867‑M1/119‑1 (MQ=255)                                                                                                                            tgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                                                                                                              <  2:188628‑M1/125‑1 (MQ=255)                                                                                                                                ggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTc                                                                                                          <  1:21419‑M1/129‑1 (MQ=255)                                                                                                                                   gcttactgctgaattcgctgtcggcgccggtaagttgatgacttctgatgtaccatgttctctggctccagatgacaaacatgatctgatatcagggacttgttcgaaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAACAGTTTTTCGCTACGCTAGCAAGCAAAACTGAAACAGGAATAATCGAAATGGGAGGTTGCGCAAAGTCAAACTAACTCACCg                                                                                                      <  2:57913‑M1/133‑1 (MQ=255)                                                                                                                                   gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGGGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                                                                                                      <  2:763‑M1/133‑1 (MQ=255)                                                                                                                                                            gaaggtaagtagatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTCGCACGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATATTCATCTGCTATAaataat                                                                             <  2:300287‑M1/158‑1 (MQ=255)                                                                                                                                                               ggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCAc                                                                          >  2:175779‑M1/91‑251 (MQ=255)                                                                                                                                                                  aagttgattactcatgattaaccctgttctttggctccagatgacaaacatgatcacatatcagggacttgttcgcgccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAAGCATCTGCTAGAAATAATCActtc                                                                       >  2:78401‑M1/88‑250 (MQ=255)                                                                                                                                                                   agttgatgactcatgatgaacccagttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATGCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTc                                                                      >  2:14364‑M1/87‑251 (MQ=255)                                                                                                                                                                                      accctgttctatggctccagatgactaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCt                                                   <  2:295909‑M1/184‑1 (MQ=255)                                                                                                                                                                                      accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCt                                                   >  1:267928‑M1/68‑251 (MQ=255)                                                                                                                                                                                                  ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAg                                       >  2:139119‑M1/56‑251 (MQ=255)                                                                                                                                                                                                      ccagatgacaaacaggatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGac                                     >  2:305846‑M1/52‑249 (MQ=255)                                                                                                                                                                                                                             atcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTa             <  2:342618‑M1/222‑1 (MQ=255)                                                                                                                                                                                                                                        gttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACaaagaa  <  1:540020‑M1/233‑1 (MQ=255)                                                                                                                                                                                                                                         ttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACaaagaa  <  1:109075‑M1/233‑1 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                         AACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAA‑ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAA  >  NC_000913/1979024‑1979503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.