Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,098,391 | 0 | A | C | 29.3% | 103.9 / 10.9 | 78 | Y219S (TAC→TCC) | rhaS | DNA‑binding transcriptional activator RhaS |
Reads supporting (aligned to +/- strand): ref base A (37/16); new base C (1/21); total (39/39) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.01e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTTCTCTGGCCGAGGT > NC_000913/4098150‑4098638 | gATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCCGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTTTCTTTCACTGCGTACGCT‑ACCTCGGCA‑GCTTAAGCAGCAAACGGGGCTGAC‑GCCTCAGCGATACCTGAACCg > 2:432959/1‑251 (MQ=255) gATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAAcc < 1:429220/250‑1 (MQ=255) tACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTGGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAACTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCt < 1:193450/250‑1 (MQ=255) gACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACtg > 1:264875/1‑250 (MQ=255) cGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAAACGCCTGCGACtgatg > 1:599092/1‑250 (MQ=255) aTGCAATTACCGCTCTCGCTGCGAAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCTCATCACGTCGCAACTTGCTGCTGGCCTGGCGGGAGGACCTTTTT‑GCCGATGAGGTGAATTGGGATGCCGGGGCGGATCAATTTTCTCTTTCCCTGCGTACGCT‑ACAGCGGCC‑GCTTAAGCAGCAAACGGGACTGCC‑GCCTCAGCGATCCCGAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGcc < 2:568045/250‑1 (MQ=255) cAATTACTGCTCTTGCTGCGTCAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTATGGCCTGGCTGGCGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCCGCGATACCTGAACCGCCCGCGACTGATGAAAGCCCGACATCTGCTACGCcac > 2:686201/1‑249 (MQ=255) tgcgtcGTAAAAGCAGTTGGCAGGAGAACCTGGAAAACAGCGACTCCCTTCTCAACTTGCTTCTGGCCTGTCTGGAGGACCATTTT‑GCCGATGAGGGGAATTGGGAGGCGGTGGCGGATCAATTTTCTCTTTCCCTGCGTCCGCT‑CTTTCGGCA‑GCTTAAGCAGCAAACGGGGCTGAC‑GCCTGAGCGGTACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGc < 1:360922/243‑1 (MQ=255) cGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTg > 1:393288/1‑250 (MQ=255) gTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGAACATTTT‑GCCGCTGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGCTACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGAc > 1:657090/1‑251 (MQ=255) aaaaGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATTCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGCGGCCAGCGTTACTGACac > 1:230385/1‑250 (MQ=255) aaaaGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCC‑ACATCGGCA‑GCTTAAGAAACAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCCGCGACTGATGAAAACCCGCCATCTGCTACGCCCCAGCGAGGCCAGCGTTACTGAcct > 2:519943/1‑249 (MQ=255) gTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAACGTTACTGACATCCCCTAt > 2:514292/1‑251 (MQ=255) ttGCAGGAGAACCTGGAAAACAGCGCATCACGTCCCAACTGGCTTCGGGCCTGGCTGGAGGCCCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACAGCGGAA‑GCTTAAGCAGCAAACGGGACTGAC‑CCCTCAGCGATACCGGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATc < 1:15264/250‑1 (MQ=255) agtagacccTGAAAACCAGCGCATCACGTCTCAACTTGCTTCGTCCCTGGCTGGAGGCCCATTTT‑CCCGATGAGGTGATTTGGATTGCCGTGGCGAATCATTTTTCCCTTTCCCTGCGTCCGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGAACTGCC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCTCCTATCGCtgt < 1:532650/244‑1 (MQ=255) ggAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑CCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGTTGAAAGCCCGACATCTGCTACGCCCCCGCGAGGCCCGCGTTACTGACACCGCCCATCGCtttg > 2:556296/1‑248 (MQ=255) gagaACCGGGAAAACAGCGCATCACGTCGCAACTTGCTTCGGGCCGGGCTGGAGGACCATTTT‑GCCGAGGAGGTGAATTGGGATGCCGTGGCGGATAAATTTTCTCTTTCACTGCGTACTCT‑ACTTGGGCA‑TTTTAAGCAGCAAACGGGACTGCC‑TCCTCAGCGTTACGGGAGCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTGCTGACATCGCCTATCGCTGTgg < 1:620918/251‑1 (MQ=255) aaCCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGAtt > 2:157350/1‑251 (MQ=255) cccTGGAAAACAGCGCATCACTTCTCAACTTCCTTCTGGCCTGGCTGGAGCACCATTTG‑GCCGATGAGGGGAATTGGGTTGCCGTGGCGTTTCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGCC‑GCCTCAGCAATTCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTc < 1:359245/250‑1 (MQ=255) ccTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCCCAGCGATACCTGAACCGCCTGCGACTTATGAAAGCCCGACATCTGCTACGCCACAACGAGGCCAGCGTTACTGACATCGCCCATCGCTGTGGATTcc > 2:502374/1‑250 (MQ=255) ccTGGAAAACAGCCCTCCCCGTCTCATCTGGCTTCTGGCCGGGCGGGAGG‑CCATTTTTGCCGATGGGGTGATTTGGGATGCCGTGGCGAAACAATTTTCTCTTCCGCTGGGTGCGTT‑ACATCGGCA‑GCTTAGGCAGCAAAGGGGACTGAC‑GCCTCGGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCa < 2:537076/251‑1 (MQ=255) aaaaCAGCCCATCACGTCTCAACTTGTTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGAATCAATTTTCTCTTTCACGGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATTCCGTAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGATGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGAc < 1:432959/251‑1 (MQ=255) gcaccACGTCTCAACTGGCTTCTGGCCTGGCGGGAGGACCATTTT‑GCCGATGGGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCCCTGCGTACGCT‑ACACCGGCA‑GCTTAAGCAGCAAAGGGGCCGGAC‑GCCTCAGCGATACCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCa < 2:139987/247‑1 (MQ=255) cacttctcAACTTGCTTCGGGCCGGTCGGGAGGACCATTTT‑CGCGATGAGGTGAATTGGGATGCCGTGGCTGATAAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGAA‑GTTTAAGCAGCAAACGGAACTGAT‑GCCTCAGCTATCCCTGAACCGCCTGCGACGGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACttt < 2:601083/247‑1 (MQ=255) aCGTCTCAACTTGCTTCTGGCCTGGATGGAGGACCATCAT‑GCCGATGCGGAGAATTGGGATGCCGCGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCC‑GCTTACGCAGACAACGGGCATGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAACCCGACATCTGCTACGCCACAGCGAAGCCAGCGTTACTGCCATCGCCTAACGCTGTGGATTCAGCGACAGTAACCACtttt > 1:282550/1‑251 (MQ=255) cGTCTCAACTTGCTTCTGTCCTGGCTGGAGGACCATTTG‑GCCGAGGAGGTGAATTGGGATGCCGTGGCGGATTAATGGTCTCTTTCGCTGCTTACGCT‑ACAGCGGCA‑GCTTAAGCAGGAAGCGGTTCGGGC‑TCCTCAGCGATCCCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCTAGTGTGACTTATAGCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTc < 1:606711/251‑1 (MQ=255) ctcAACTTGCTCCTGGCCTGCGTGGAGGACCATGTT‑GCCGTTGGGGTGAATTGGGATGCGGGGGCGGATCAATTTTCTCTTTCACTGCTTTCGCT‑ACTTCGGCA‑GCTAAAGCAGCAAAGGGGACTGAC‑GCTTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACTCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCg < 1:438028/249‑1 (MQ=255) ttGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑AAATCGGCA‑GCTTAAGCCGCAAACGGGACTGAC‑GCCGCAGCGATACCTGAACCCCCTGCGAATGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAAACACTTTTCGACGCtttt > 1:500276/1‑251 (MQ=255) ttcTTCTGGCCGGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATGGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGAAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCttt < 1:319297/247‑1 (MQ=255) gctcctggcctggcTGGAGGCCCTTTTT‑GCCGATGAGGTAAATTGGAATGCCGTGGCGAATAAATTTTCTCTTTCCCGGCTTACGCT‑ACATCGGCA‑GCTTAACCAGCAAACGGGACGGAC‑GCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTc < 1:145228/247‑1 (MQ=255) gtggttggaggcccttttgtccGATGAGTTGAATTGGGATGCCGGGGCGGAGAAATTTTCTTTTTCGCTGCGTAGGCG‑ACATCG‑CATGCTAAAGGAGAAACCGGGCCTGCC‑GCCTCAGCGATCCCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACGTTTCGACGCTGTTTCGCCGAGAGt < 2:301367/231‑1 (MQ=255) ggaggaCCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCCATTTTCTCTTTCACTGCGGACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGGTACCTGAACCGCCTGCGCATGATGAAAGCCCGACATCTGCTACGCCCCAGCg > 2:168816/1‑167 (MQ=255) ggaggaCCATTTT‑GCCGATGAGGGAAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCTTACGCT‑ACACCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCg < 1:168816/167‑1 (MQ=255) gaggaCCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTg > 1:151241/1‑251 (MQ=255) aggaCCTTTTT‑GCCGTGGAGGGGATTTGGGATGCCGGGGCGGATCAATTTTCTCTGTCCCTGCTTCCGCT‑ACAGCGGCA‑GCTTAAGAAGAAAACGTGACTGAC‑GCCTAAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACAGCGCCTATCGCTGTGGATGCAGCGACAGTAACCACTTTTCGACTCTTTTTCGCCGAGAGTTTAACTgg < 2:675504/251‑1 (MQ=255) aggaCCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCCATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGCGAGTTTAACTgg > 2:159612/1‑251 (MQ=255) gaCCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTc > 1:571847/1‑251 (MQ=255) aCCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCCATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGAAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGCGAGTTTAACTTGTc > 1:467849/1‑250 (MQ=255) t‑GCCGAAGGGGTGAATGAGGATGCCGTGCAGGATCATTTTTCGCTTCCAGTGCGTACCCT‑CAATCGGCA‑GCTAAAGCAGCAAACGGACCGGCC‑GCCTAGGGGATACCTGACCCGCCTGCGACTGATGAAAGCCCGACATCGGCTACGCCACAGCGAGGCCAGCGTTTCTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTGAACTGGTCACCGCGt < 2:121773/250‑1 (MQ=255) ggcctatggggtgatgtGGGATGCGGTGGCGTATCAATTTTCTCTTGCACTGCGTCCGCT‑ACAGGGGCA‑GCTTAAGAAGCAAACGGGACTGAC‑GCCCCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTGTCTCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACGGGTCACCGCGt < 2:334356/234‑1 (MQ=255) gCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTCCACGGCGTCCGCT‑ACATCGGCA‑GCTTAAGCAGCAACCGGTACTGCC‑GCCTCAGCGATCCCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGa < 1:330617/251‑1 (MQ=255) cGATGAGGTAAATGGGGATGCCGTGGCGGATCATTTTTCTCTTCCACTGCGTCCGCT‑ACATCGGCA‑GCTAAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCGAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGata < 1:258345/251‑1 (MQ=255) gATGAGGTAAATTGGGATGCGGTGGCGGATCATTTTTCTCTTTCACTGCTTCCGCT‑CCATCGCCA‑GCTTAAGCACCAACCGGGCCTTAC‑GCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCTCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGatat < 1:686201/251‑1 (MQ=255) gTGAATTGGGATGCTGTGGCGGATAAATTTTCATTTTCACTGCGTCCGCT‑ACTTCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCCTTCCCGGAGCCGCCTGCGACTGATGAAAGCCCGACTTCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCa < 1:447624/251‑1 (MQ=255) tGGGATGCCGTGGCGGATCAATTTTCTCTTTCACGGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAACCGGGCCTGAC‑GCCTCGGCGATCCCGGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGAc < 1:519943/250‑1 (MQ=255) ggATGCCGTGGGGGATCAATTTTCTCTTTCACGGCGTACCCT‑ACACCGGCA‑GCTTAACCAGAAAGCGGGACTGAC‑GCCTCAGCGATCCCGGAGCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACggg < 2:129417/251‑1 (MQ=255) gggCGGAACAATTTTCTCTGTCACGGCGT‑CGGTGACTCCGCCA‑GCTGAACCAGCAAACGGGACTGAC‑CCCCCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATGCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCtt < 2:590996/249‑1 (MQ=255) gggATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTg < 1:514292/250‑1 (MQ=255) gATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGc > 1:191847/1‑250 (MQ=255) tCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTACCGCtgtg > 2:425579/1‑155 (MQ=255) tttCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGCGTTTAACTGGTCACCGCGTGATATTCGCCCGGGACGGGATGGCTTTCTGCAATAAcgc > 2:444383/1‑251 (MQ=255) ctTTCACTGCGTCCGCT‑ACACCGGCA‑CCTTAAGCAGAAAACGGGAC‑GACCGCCTCGGCGATCCCGGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCCTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGaa < 2:17291/249‑1 (MQ=255) tttCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAAtct > 2:503213/1‑251 (MQ=255) ttCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCATGCGACTGATGAAAGCCAGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGCAtctt > 2:640234/1‑251 (MQ=255) ccggggcacgtcacagcGGCA‑GCTAAAGCACGAATCGGGACGGAC‑GCCTCAGCGATCCCGGAGCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTGCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGTTTTCTGCAGTAACTCGAATCTtctc < 1:571796/235‑1 (MQ=255) cGTACGCA‑CCATCGGCA‑GCTTAAGCAGCAAACGGGACTGCG‑GCCCCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACg < 2:264875/251‑1 (MQ=255) gtccGCT‑ACACCGGCA‑GCTTAAGCAGAAAACGGGACTGAC‑CCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATg < 1:368763/216‑1 (MQ=255) gTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATg > 2:368763/1‑219 (MQ=255) cGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAAAGTAtt > 2:486981/1‑251 (MQ=255) gCT‑ACATCGCCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTGCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGTTTTCTGCAATAACGCGAATCTTCTCAACGTAttt < 1:423532/251‑1 (MQ=255) t‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGt > 2:21282/1‑251 (MQ=255) aCATCGGCA‑GCTTAAGCAGCAAACGGGACTGAA‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGCCATCTGCTACGCCACAGCGCGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGCTATTCGCCAGGGACGGGATGGCTTTCTGCAATCACGCGAATCTTCTCAACGTATTTGt > 2:407961/1‑250 (MQ=255) ggCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGccc > 2:471203/1‑250 (MQ=255) ggCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGACCCCTGAACCGCATGCAACTGATGAAAGCCCGACATCTGCTACGACACAGCGAGGCCAGCGTTACTGACATCGCCTCTCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGCTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGcc > 1:87441/1‑250 (MQ=255) cggCTTAAGCAAAAAACGGGCCGGAC‑GCAGCAGGGATCCCGGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCata < 2:571847/249‑1 (MQ=255) gCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATAtt > 1:400400/1‑251 (MQ=255) ccTTAAGCAGCAACCGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATAtt < 1:20357/250‑1 (MQ=255) tAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCg > 2:212133/1‑251 (MQ=255) aaGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCg > 1:471267/1‑250 (MQ=255) agcaAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGaata > 1:120249/1‑250 (MQ=255) caAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGCCGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATc > 1:72074/1‑251 (MQ=255) aaaCGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGACTCTTCTCAACGTATTTGTACGCCATATTGCGAATAATc > 1:599338/1‑250 (MQ=255) gggACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACtt > 1:488591/1‑251 (MQ=255) cggAC‑GCCTCAGCGATACCTGACCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGtt < 1:682642/249‑1 (MQ=255) gaccccccAGCGATACCCGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTtct < 2:191847/244‑1 (MQ=255) ccAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTTCGCTGGcc < 1:207061/250‑1 (MQ=255) cAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCa > 1:536583/1‑203 (MQ=255) gATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTTCTCTGGCCGAGGt > 1:389703/1‑251 (MQ=255) | GATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTT‑GCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCT‑ACATCGGCA‑GCTTAAGCAGCAAACGGGACTGAC‑GCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTTCTCTGGCCGAGGT > NC_000913/4098150‑4098638 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |