Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913729,7100TG30.9% 46.6 / 12.0 42V43G (GTG→GGG) rhsCrhs element protein RhsC
Reads supporting (aligned to +/- strand):  ref base T (7/22);  new base G (13/0);  total (20/22)
Fisher's exact test for biased strand distribution p-value = 3.04e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AAATATTTTCCTAATTGTTCTTATCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCACCT  >  NC_000913/729469‑729959
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                             
aaaTATTTTCCTAATTGTTCTTATCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTTCGG‑GTGCCCCGGCGGGGGGAccgtcgg                                                                                                                                                                                                                                                      >  1:616895/1‑245 (MQ=255)
                              gATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCaaa                                                                                                                                                                                                                     <  1:659770/251‑1 (MQ=255)
                                     cACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGt                                                                                                                                                                                                                  <  2:176657/247‑1 (MQ=255)
                                       cTTAAGGCTTTCTTATAAATATGTAGGGTATCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGACGGGGGACGCATCGGTGCCCCCCCCGGCGTGGCCTGTT‑CGGGGTTCCCCCGCGGGGGGAGGGCCGGCCCTCCGGGCAATCCgc‑tg‑caccggggaaagggccttcc                                                                                                                                                                                                             >  1:229096/1‑232 (MQ=14)
                                          aaGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGGGGCCTGTT‑CGGGGTGCCCCGGCGGGGGGGCGTCCGGCCCTCCGGTCAATCCGC‑TG‑CTC‑GGGGCCAAGGGCCCTccccg                                                                                                                                                                                                         >  1:143589/1‑249 (MQ=14)
                                            ggCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCTTGGCCTGTT‑CGGGGTGCCCCGGCGGGGTGACTTCCGGCCATCCGGTCAAGCCGC‑TG‑CTC‑GTTGCAAAGGTCCTTCCCGGTg                                                                                                                                                                                                       <  2:690543/251‑1 (MQ=255)
                                                      aaaaTCTGTAGGGTGTCGCCGGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGGGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACAt                                                                                                                                                                                             <  2:76172/250‑1 (MQ=255)
                                                               aGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTgcc                                                                                                                                                                                    <  1:640626/251‑1 (MQ=255)
                                                                     tCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGGATTGTCCAGGGATCAGACGGGGTACGGAACGGGGCCCCCACCGGCGTGGGCTGTT‑TGGGGTGCCCCCGCGGGGGGACGGTCGGCCAACCCGGCAAACCGCATG‑‑GC‑GGCGGAAAGGTCCTTCCCGGTGAAACCGACATCGGCCTgcccggcgc                                                                                                                                                                              >  1:311275/1‑249 (MQ=14)
                                                                      cGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTgcccggcccg                                                                                                                                                                             <  2:44967/251‑1 (MQ=255)
                                                                                    cAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGGGTGCCCCGGCGGGGGGACGTCCGGCCCTCCGGTCAATCCGC‑CG‑CTC‑GGGGCAAAGGGCCCTCCCGGGGGAACCGACATCGCCCCGCCCCGCCCCCTGCCGTTCATtct                                                                                                                                                               >  1:199372/1‑251 (MQ=14)
                                                                                      aaTAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCCGGGTTCAGCCGGGGTACGCATCGGTGCCCCCCCCGGCGTGGCCTGGT‑CGGGGTGCCCCCGCGGGGGGACGGCCGGGCCTCCCCGCAATCCCC‑CG‑CCC‑CGTGCCAAGGGCCTTTCCGGGGAAAACGCCATCGCCCCGCCCCGCCCCCCGCCCTTCCTtctcc                                                                                                                                                             >  2:180355/1‑250 (MQ=9)
                                                                                         aaCCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCCGTT‑CGGTGTGCCCCGGCGGGGGGGAGTCCGGCCCTCCCGGCAATCCGC‑CG‑CTC‑GGGGCAAAAGGCCTTCCCCGGGAAAACGACATCGCCCCCCCCCGCCCCCCGCCGTTCATTCTCTccc                                                                                                                                                          >  1:622717/1‑251 (MQ=14)
                                                                                                   aaCAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGGGTGCCCCGGCGGGGGGACGACCGGCCATCCGGTCAAACCGCCTG‑C‑C‑GGGGCGCAGGGCCCTCCACGTGCAACCGGCATCGCCCCGCCCCGCCCCCCGCCGTTTATTCTCTCCAGCACCtcc                                                                                                                                                  >  1:692948/1‑247 (MQ=14)
                                                                                                           tGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCCCCGGCGTGGCCTGTT‑CGGTGTGCCCCCGCGGGGGGACGGCCCGCCCTCCGGTCAAACCGC‑TT‑CCC‑GGGGCAAAGGTCCCTCCCGGGGAAACCGACATCGCCCTGCCCGGCCCCCTGCCGTTCATTCTCTccccccccttccgccggttcc                                                                                                                                        >  1:151708/1‑233 (MQ=14)
                                                                                                              gCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑a                                                                                                                                    <  1:93186/251‑1 (MQ=255)
                                                                                                               cAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑Ac                                                                                                                                   <  1:516135/251‑1 (MQ=255)
                                                                                                                        ggAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGcc                                                                                                                          <  1:535903/251‑1 (MQ=255)
                                                                                                                             aCCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGGCTGTT‑TGGTGTGCCCCGGCGGGGGGGAGTCCGGCCCTCCGGGCAAACCGC‑TG‑CCC‑GGGGCAAAGGGCCCTCCCGGTGAAACCCGCCTCGCCCCGCCCCGCCCCCCGCCGGTCCTTCTCTCCCGCACCTCCCGCAGGTTCCCG‑ACACAAACGCCCccgc                                                                                                                     >  1:563075/1‑251 (MQ=9)
                                                                                                                                 gctccgcaccagtgCGACATGACGCAGGATGTCGGGAGCATGTTCCAGGGTTTAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCAGGGTGACGTCCGGCCATCCTGTCAATCCGC‑GG‑CTC‑TGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTTCCGTTCATTCTCTCCCGCACCTTCAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGt                                                                                                                 <  2:255120/238‑1 (MQ=14)
                                                                                                                                 gcggcgCGTCAGGGCGACATGACGCAGTATGGCGGTGGCATTGTCCAGGGTTCAGCCGGGGTCCGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGt                                                                                                                 <  2:616895/251‑1 (MQ=255)
                                                                                                                                    gcgcTTCAGGGCGACATGACGCAGTATGGCGGTAGCAGTGTCCAGGGTTCAGCCGGGGTACGCACCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGGGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCAGTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCTCCGGTggg                                                                                                              <  2:229096/251‑1 (MQ=255)
                                                                                                                                      gcgTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGa                                                                                                            <  1:667765/251‑1 (MQ=40)
                                                                                                                                          cAGGGCGACATGACGCGGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCAGCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGGCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTCCAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCt                                                                                                        <  2:124434/251‑1 (MQ=255)
                                                                                                                                          cAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCCTCGGTGCCCCCCCCGGCGTGGCCCGTT‑CGGGGTGGCCCGGCGGGGGGGAGGCCGGCCCTCCCGGCAATCCCC‑CG‑CTCCGGGCCAAAGGCCTTTCCCGGGAAAACCCCCA‑CGCCCCGCCCCGCCCGCTGCCGGTCATTCTCTCCCCCCCCCCCAGCAGTTTCCGG‑GGCAAAACGcccccggccgggtggggccc                                                                                                        >  2:166018/1‑234 (MQ=2)
                                                                                                                                             ggCGACATGACGCAGTATGGCGGTACCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCCGCGGGGGGACGTCCCGCCATCCGGTCAATCCGC‑CT‑CTC‑GGGGCAAAGGTCCTTCCCGGGGAAACCGACATCGCCCTGCCCCGCCCCCCGCCGTTCATTCTCTCCCCCACCTTCCGCAGTTACCGG‑GCAAAAACGCCCCCGCCGGTGGGGGGCCTccg                                                                                                     >  1:151934/1‑249 (MQ=14)
                                                                                                                                                                        aTTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGCCATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCAACTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGGGGGGAGCCTCg                                                                                                      >  1:404087/1‑223 (MQ=255)
                                                                                                                                                                        aTTGTCCAGGGTTCAGCCGGGGTACGCAGCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTGACCGT‑ACAAAAACGCCCGCGCCTGGGGTGAGCCTCg                                                                                                      <  2:404087/223‑1 (MQ=14)
                                                                                                                                                                           gTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCCGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATcc                                                                        <  1:527902/250‑1 (MQ=255)
                                                                                                                                                                                        ccgctatgccgagctgTGCCCCCACCGGCCGCGCCGGTG‑CGGTGTGCCCCGGCGGGGTGGCGTCCGGCCATCCGGTCAATCCGC‑TG‑CCC‑TGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCGGCCCGGCCCGCTGCGGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAAGGCCTGCGGATAGCCGCTTACAGCTgcgc                                                          <  2:408803/236‑1 (MQ=11)
                                                                                                                                                                                        ccGGGGTACGCCTCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGGCATCCGGGCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCCGTTACCGG‑ACAAAAACGCCCGCGCCGGGGGGGAGCCTCGGCCCCGGCTGGGAAATGCCCGCGGGAATCCGCTTAccgccgggc                                                          >  2:235550/1‑243 (MQ=14)
                                                                                                                                                                                        ccGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCAGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑CCCAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTgcgc                                                          >  1:330200/1‑251 (MQ=255)
                                                                                                                                                                                            ggTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGACCCGGCGGGGTGACGTCCGGCCATCCGGGCAATCCGC‑TG‑CTC‑GGTGCAAAGGGCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCCGTTACCGGGACAAAA‑CGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGGTGGAAAAAGCCTGCGGCTATCCGCTTACAGCTGCGCGAt                                                       >  2:427656/1‑250 (MQ=14)
                                                                                                                                                                                                     cGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGGCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCACAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCCTTCTCTCCCGCACCTACAGCCGtt                                                                                                                                           >  2:474523/1‑158 (MQ=14)
                                                                                                                                                                                                     cGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGtt                                                                                                                                           <  1:474523/158‑1 (MQ=39)
                                                                                                                                                                                                     cGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTg                                              <  1:435887/250‑1 (MQ=35)
                                                                                                                                                                                                       gTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGGGCGGTATCGCCCGGCCATCCGGTAAATTCGC‑TGACCC‑GG‑GCAACGGTTCTTACACGTGGAACCGACCTCGGCCTGCCCGGCCCGCTGTCGTTCATTCTCTCCCGCCCCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGGCTCGGCCCCCGCTGGAAAACGCCTGCGGATATCCGCTTACAGCTgcgc                                                          >  1:408803/1‑236 (MQ=2)
                                                                                                                                                                                                                     gTGGCCTGTT‑CGGTGTGCCCCGGCGGGGGGACGTCCGGCCATCCGGGCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAACTGACTGCCGACATCCGCCTACAGCTGGGCGATAACACACCGATACTCAGTGATAAcgg                             >  2:528044/1‑251 (MQ=11)
                                                                                                                                                                                                                                   tgtgCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTg                >  1:674638/1‑251 (MQ=34)
                                                                                                                                                                                                                                       ccccGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTAtt            <  1:32929/251‑1 (MQ=34)
                                                                                                                                                                                                                                                ggTGCCGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGACACCGACATCGCCCGGCCCGGCCCGCGGCCGTTCATTCTCGCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGTGATCCTCGGCCTCGGCTGGAAAATGCTTGCGGATATCCGCTTACAGCGGCGCGATAACTCACTGATACTCAGGGATAACGGCATCAGAAGTCTGTATTTTGAGcccc   <  2:87464/251‑4 (MQ=11)
                                                                                                                                                                                                                                                 gTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACGCACTGATTCTCAGTGATAACGGCGGCATAAGCCTGTATTTTGAGCACCt  <  1:571194/251‑1 (MQ=18)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                             
AAATATTTTCCTAATTGTTCTTATCTGACAGATATCTCACTTAAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTT‑CGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGC‑TG‑CTC‑GGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGG‑ACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCACCT  >  NC_000913/729469‑729959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑