| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,591 | Δ24,234 bp | [yghD]–yghT | 20 genes [yghD], yghE, yqhJ, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH9, yghQ, yghR, yghS, yghT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110591 | 3134824 | 24234 | 38 [0] | [0] 38 | [yghD]–yghT | [yghD],yghE,yqhJ,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH9,yghQ,yghR,yghS,yghT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110590 | 0 (0.000) | 38 (0.580) | 35/486 | 0.8 | 100% | coding (537/537 nt) | yghD | putative type II secretion system M‑type protein YghD |
| ? | NC_000913 | 3134825 = | 0 (0.000) | intergenic (+2/+47) | yghT/pitB | putative ATP‑binding protein YghT/metal phosphate:H(+) symporter PitB | |||||
GTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACGTAAACCCGACCATAAACGGGAATCGCTGGCGAGGAAGATTGCCATAACGCCACAGTTAACCTTTGGTGGTGCACAACTGGTTGATATCGATGCCAATCAGCCACTGGAACAGGTGTTGGTTGATGCAGAAAAAGCGATTACGGATTTTATGACCGCGCGTGGTTATCACTAGTCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACTGGCAAGACCG > NC_000913/3134577‑3135070 | aatcaggtttaatgcgccccgttgcccggatagctcagtcggtagagcaggggattgaaaatccccgtgtccttggttcgattccgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaatgagagtaattttattgatattaatctcctgatacttCaa < 1:471585‑M2/3‑1 (MQ=255) gtttaatgcgccccgttgcccggatagctcagtcggtagagcaggggattgaaaatccccgtgtccttggttcgattccgagaccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATgg > 1:328693‑M2/243‑251 (MQ=255) tgtccttggttcgattccgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCggg < 2:560687‑M2/33‑1 (MQ=255) tgtccttggttcgattccgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCggg > 1:560687‑M2/182‑214 (MQ=255) gtccttggttcgattccgagtccgggcaccactaattattaagaacccgcccacaaggcgggtttttgcttttggatctgacaataacattaccgaaaaaaattagcttataacgtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATcc > 1:349032‑M2/181‑250 (MQ=255) gattccgagtccgggcaccactaattcttaagaacccgcacacaaggcggggttttgcttttgcatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgcgagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCccac > 1:109511‑M2/170‑251 (MQ=255) ccgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCag < 1:234467‑M2/85‑1 (MQ=255) cgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCaga > 1:152414‑M2/165‑250 (MQ=255) gagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaaggctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCagaaa < 2:599286‑M2/88‑1 (MQ=255) agtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCagaa > 1:178332‑M2/163‑249 (MQ=255) gggcaccactaattctgaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactcgcgccacgttaacgagagtaattttagtgatattaagctcctgatacttCAAAAAGGGAAATGCCCGATCGCCAGGACCGGGCAGTTTCAGTAAGTTTAAATCAACTGCAATGCTAGCCAGTACAGGCCACCAGAAAGaaaaa < 2:259442‑M2/94‑1 (MQ=255) gcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAAtt < 1:592510‑M2/96‑1 (MQ=255) ttcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGACAGAAAAATTGCCGCcggg > 1:377997‑M2/146‑249 (MQ=255) cgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGTAAAATTGCCGCCGGTAAAGTAAATAccc > 1:501836‑M2/134‑251 (MQ=255) gcttttggagcggacaaaacccttcgcgaaaaaaattagcttataaagtctgggggaattactctcgccccgttaacgaaagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGTTCGCCAGACCCGGACATTTCCAGAAAGGTTAAATCAACTGCAATCCTATCCAGTACAGCCCACCAGAAAGAAAAAGTGCCGCCGGTAAAGTAAATGCCCACGCCATCAGGATGCTGGtt < 2:151749‑M2/138‑1 (MQ=255) ttgggatctggcaaaaaccttcacgaaagaaattagcttataaagcctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAACAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGACAAATTGCAGCCGGTAACGCAAATACCCACGCCATCAGGATGCTGGTTAcc > 2:331234‑M2/111‑251 (MQ=255) ttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgacacgttaacgagagtaattttattgatattaatctcctgatacttAAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAATTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCAGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTAc > 1:278821‑M2/110‑249 (MQ=255) ctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTAc > 1:53818‑M2/104‑251 (MQ=255) accttcacgaaaaaaatgagcttataaagtcggggggaattcccctcgccacgttaacgagattaattttattgatattaatctcctgatacttCAAAAATGGAAAGCCCCGAGCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACGGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAAcc < 2:280121‑M2/157‑1 (MQ=255) gcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCAt > 1:228025‑M2/76‑251 (MQ=255) aaaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCCCCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTcc < 2:178332‑M2/181‑1 (MQ=255) ggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAACAATGGAAATGCACGATCGCCAGGACCgg > 2:596689‑M2/62‑93 (MQ=255) gaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCAACGCCGTCCACCACCATCGTCCCTGCAACTGc > 2:562408‑M2/59‑249 (MQ=255) attactcccgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGAATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGAc < 1:92769‑M2/195‑1 (MQ=255) actctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACg > 1:183985‑M2/54‑249 (MQ=255) acgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACgtgt > 1:441503‑M2/45‑251 (MQ=255) ggaaattttattgatatgaatctccggaaacttCAAAAATGGAAAGGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCACCTGCAATGCTATCCAGTACAGCCCCCCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGAc < 2:331351‑M2/218‑1 (MQ=255) gtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGCGACg > 2:558801‑M2/33‑251 (MQ=255) attttattgatattaatctcctgatacttCAAAAATGGCAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTCCAGCCCACCAGCAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGga > 1:102342‑M2/30‑244 (MQ=255) attttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGc > 1:574343‑M2/30‑251 (MQ=255) attttattgatattaatctcctgatacttCAAAAATGGAAATCCCCGATCGCCAGGACCGGTCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTGTACGCTGTAACCGACCGCCGTCCACCACCAGCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGga < 2:102342‑M2/215‑1 (MQ=255) atttgattgatattaaactcctgatactgAAAAAATGGAATAGCCCGATCGCCGGGACCGGGAATTTGCAGGAAGGTTAAATCAACTGCAATGCTAGCCAGTACAGCCCACCATAAAGAAAAATTGCCGCCGGTAAAGTAAAGACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGGGTGTTGTGGAGACGGGc < 2:630678‑M2/222‑1 (MQ=255) tattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAatat > 2:502992‑M2/20‑251 (MQ=255) cctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGTGCATCCCAATATAACTGGc < 1:258408‑M2/239‑1 (MQ=255) atacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCCGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACTGGCAAGAcc > 2:325858‑M2/7‑251 (MQ=255) aacttCAAAAATGGAAACGCCCGATCGCCGGGACCGGGCATTTTCAGAAAGTGTAAAGCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAAGTGCCGCCGGTAAAGTAAAGACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACTGGCAAGACCg < 2:431675‑M2/246‑1 (MQ=255) acttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCGACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACTGGCAAGACCg > 1:156627‑M2/5‑250 (MQ=255) acttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTTTAACCCACCGCCGCCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGCCGGGCATCCCAATATAACGGGCAAGACCg > 1:529746‑M2/5‑250 (MQ=255) | GTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACGTAAACCCGACCATAAACGGGAATCGCTGGCGAGGAAGATTGCCATAACGCCACAGTTAACCTTTGGTGGTGCACAACTGGTTGATATCGATGCCAATCAGCCACTGGAACAGGTGTTGGTTGATGCAGAAAAAGCGATTACGGATTTTATGACCGCGCGTGGTTATCACTAGTCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACTGGCAAGACCG > NC_000913/3134577‑3135070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |