Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,048,805 Δ48,085 bp [gfcB]ycdU 45 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1048805 1096889 48085 53 [0] [0] 52 [gfcB]–ycdU [gfcB],gfcA,insA4,insB4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF4,insE4,ycdU

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 10488040 (0.000)52 (0.800) 51/484 0.3 100% coding (529/645 nt) gfcB lipoprotein GfcB
?NC_000913 1096890 = 0 (0.000)intergenic (+61/+675) ycdU/serX uncharacterized protein YcdU/tRNA‑Ser

ACAACATTTTCCACGGGGCCAACGGAAAGTGTCTGTTGTTCGCCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGTTTTTCTGGCCGCGTGGAAGTCACCTCTTCCTGCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGA  >  NC_000913/1048555‑1049049
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                     
acaacaTTTTCCACGGGGCCAACGGAAAGTGTCTGTTGTTCACCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTgg                                                                                                                                                                                                                                                      >  2:229483/1‑250 (MQ=255)
  aacaTTTTCCACGGGGCCAACGGAAAGTGTCTGTTGTTCACCAGGCAGATAAATAGTCACCGTTCCGTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGatt                                                                                                                                                                                                                                                    <  2:503648‑M1/251‑4 (MQ=255)
             cGGGGCCAACGGAAAGTGTCTGTTGTTCACCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGCATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagt                                                                                                                                                                                                                                         >  1:629‑M1/1‑237 (MQ=255)
              ggggCCAACGGAAAGTGTCTGTTGTTCACCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagt                                                                                                                                                                                                                                         >  2:592316‑M1/1‑236 (MQ=255)
                   cAACGGAAAGTGTCTGTTGTTCACCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtgacc                                                                                                                                                                                                                                     >  2:466878‑M1/1‑231 (MQ=255)
                    aaCGGAAAGTGTCTGTTGTTCACCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccag                                                                                                                                                                                                                                   <  1:264987‑M1/250‑21 (MQ=255)
                    aaCGGAAAGTGTCTGTTGTTCACCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaacc                                                                                                                                                                                                                                     >  2:264987‑M1/1‑230 (MQ=255)
                         aaaGTGGCTGTTGTTCACCAGGCAAATAAATAGGCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagtt                                                                                                                                                                                                                             <  2:227685‑M1/251‑27 (MQ=255)
                          aaGTGTCTGTTGTTCACCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttg                                                                                                                                                                                                                            <  1:490636‑M1/251‑28 (MQ=255)
                                         cccaGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCGGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcc                                                                                                                                                                                                             <  1:123963‑M1/250‑43 (MQ=255)
                                          ccAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttccc                                                                                                                                                                                                            <  2:8371‑M1/251‑44 (MQ=255)
                                             ggCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctc                                                                                                                                                                                                         <  1:229483‑M1/251‑47 (MQ=255)
                                              gCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcg                                                                                                                                                                                                        <  2:526758‑M1/251‑48 (MQ=255)
                                                aGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgcc                                                                                                                                                                                                      >  1:506174‑M1/1‑202 (MQ=255)
                                                   aaaatAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGGGCGGGTTTAAGAAACGTTATTTCTACGGGGAGAACCCCTGCGCCTAACATGTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGGTTTGCCACTGagtgttgactgagtatccaaacagtggatgtgcaccagttccccacgcccta                                                                                                                                                                                                   <  2:431006‑M1/250‑53 (MQ=255)
                                                     aaTAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaac                                                                                                                                                                                                 >  1:145489‑M1/1‑197 (MQ=255)
                                                         gTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagac                                                                                                                                                                                             <  2:137563‑M1/251‑59 (MQ=255)
                                                              cGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtggg                                                                                                                                                                                        <  1:487830‑M1/251‑64 (MQ=255)
                                                               gttacttgcGCAAAGGCAGGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTAATTTCTACGGGAATAACCCCTGCGCGTAACAGTTGCCGAGTGGGACGAACTGGGGCAGTAGCCGAATCGACCCAGAATGGGTTGGGCCAGTGatggttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggc                                                                                                                                                                                       <  1:332129‑M1/247‑65 (MQ=255)
                                                                          aaaGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccg                                                                                                                                                                            >  1:277574‑M1/1‑176 (MQ=255)
                                                                               cATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgagttcccctcgccctaacagacgtgggcgggggcacccggtgtg                                                                                                                                                                       <  1:592316‑M1/251‑81 (MQ=255)
                                                                                       gtCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatat                                                                                                                                                               >  2:553362‑M1/1‑163 (MQ=255)
                                                                                       gtCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaata                                                                                                                                                                <  1:627700‑M1/250‑88 (MQ=255)
                                                                                         cATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAACAACCCATGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatac                                                                                                                                                             >  1:642471‑M1/1‑161 (MQ=255)
                                                                                                        gCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTCCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgt                                                                                                                                              >  2:242182‑M1/1‑146 (MQ=255)
                                                                                                              aaTGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttc                                                                                                                                        <  1:379989‑M1/251‑112 (MQ=255)
                                                                                                                 gAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGTCGACTTTGACGAACCTGGCCAGGAGCCGAATCGACCCAGAATGTGGTTTGCCACTGattgttgactgagtaaccagacagtggatgtgcacgatttccccgcgccctaacatacgtgggcgggtgcacccggtgtgtgcaatatacgaaaaaaaatcccgtactttcgta                                                                                                                                     <  2:332649‑M1/251‑115 (MQ=255)
                                                                                                                   aaTACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacg                                                                                                                                   <  2:277574‑M1/251‑117 (MQ=255)
                                                                                                                     tACGAATGTAATTTATTCATGGTGCGGGCTTAAGAAACGTCATTTCTACGGGAATAACACATGCGCCTAACATTTGCCGACTTTGACGAAGCTGGCCAGTAGCCGAATCGACACAGACTGTGTTTTGCCACTGattgttgactgagaaaccagacagttgatgtgctcgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaacaagcccgtactttcgtacg                                                                                                                                   >  2:307452‑M1/1‑133 (MQ=255)
                                                                                                                                 ttATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTCCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaa                                                                                                                      <  1:242182‑M1/250‑130 (MQ=255)
                                                                                                                                   aTTCATGGTGCGGGTTTAAGCAACGTCATCTCTACGGGAATAACCCCTGCGCCTAACCTTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcactatacgaaaaaaaagcccgtcctttcgtacgagctcttctttaaat                                                                                                                    >  2:33184‑M1/1‑119 (MQ=255)
                                                                                                                                          gTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGCACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtccgagctcttctttaaatatggcggg                                                                                                            >  2:504608‑M1/1‑112 (MQ=255)
                                                                                                                                                   tAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttcgttaaatatggcggtgagggggg                                                                                                    <  1:599263‑M1/250‑148 (MQ=255)
                                                                                                                                                     aGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcaccaggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagatcttctttaaatatggcggtatggggggggg                                                                                                 >  1:500432‑M1/1‑101 (MQ=255)
                                                                                                                                                        aaCGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgggggggtgggtt                                                                                               >  1:38177‑M1/1‑98 (MQ=255)
                                                                                                                                                              aTTTCTACGGGAATAATCCCTGCGCCTAACATCTGCCGACTTTGACGAACCTAGCCAGTAGACGAATCGACCCAGAATGTGTTTTGCCACTGatagttgactgagtaaccagacagttgctgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtaagagctcttctttaaatatggcggggggggggggggagactcgcc                                                                                        >  2:486806‑M1/1‑92 (MQ=255)
                                                                                                                                                                 tCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttc                                                                                      <  1:369604‑M1/250‑162 (MQ=255)
                                                                                                                                                                          aTAACCCCTGCGCCTATCATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTGGCCACTGattgttgactgagtaaccagacagttgatgggcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgaggggtggattgactcgcttcgctcgccctg                                                                            <  2:451156‑M1/251‑172 (MQ=255)
                                                                                                                                                                            aaCCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggggtgatccggtctcttccccctgcg                                                                          >  1:17045‑M1/1‑78 (MQ=255)
                                                                                                                                                                            aaCCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggggtgagtcgcgtcgcccgccccgcg                                                                          >  1:562154‑M1/1‑78 (MQ=255)
                                                                                                                                                                               cccTGCGCCTAACATTTGCAGACTTTGACGAACCTGGACAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctctt                                                                                                                            >  2:664323‑M1/1‑75 (MQ=255)
                                                                                                                                                                                ccTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggca                                                                      <  1:447969‑M1/251‑178 (MQ=255)
                                                                                                                                                                                    cgcCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggagtgactcccttcgctccccccgcgggccgccc                                                                  >  1:479766‑M1/1‑70 (MQ=255)
                                                                                                                                                                                        tAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggagtgggggggggtgactcgcttccgccgccctgcgggggggccactc                                                              >  1:223008‑M1/1‑66 (MQ=255)
                                                                                                                                                                                           cATTTGCCGATTTTGACGACCCTGGCCAGTAGCCGAATCGCCCCAGAATGTGGTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgagttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttcgttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcact                                                           <  2:368348‑M1/251‑189 (MQ=255)
                                                                                                                                                                                              ttGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgaggggggggttgactcgtttcgcgcgccctccgggggacccccccccctcg                                                        >  1:11282‑M1/1‑60 (MQ=255)
                                                                                                                                                                                                 ccGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttc                                                     <  2:223008‑M1/251‑195 (MQ=255)
                                                                                                                                                                                                          aCGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatagacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggctgtgagggggggattgactcgcttcgctcgcccagcgtgcagcccgctcactgcgttcacggtctgt                                            <  2:276235‑M1/251‑204 (MQ=255)
                                                                                                                                                                                                                  ggCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgggcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactg                                     <  2:629‑M1/250‑211 (MQ=255)
                                                                                                                                                                                                                              aaTCGACCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgttggcgggggcacccggtgtttgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcccggtctgtccaactggctgtcgccagtt                        <  1:181394‑M1/251‑224 (MQ=255)
                                                                                                                                                                                                                                   aCCCAGAATGTGTTTTGCCACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgaggggggggtttaatcgcttcgcccgccctgcggggcgccccctcaccgcggttaccgtctgtcccactggctgtcgcccgttgtcgg                   >  1:118069‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                                             gtgtttgccACTTattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgtgggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgtcgacccccggtcg         <  2:534897‑M1/248‑239 (MQ=255)
                                                                                                                                                                                                                                                    ccACTGattgttgactgagtaaccagacagttgatgtgcacgatttcccctcgccctaacagacgggggcgggggcacccggtgtgtgcaatatacgaaaaaaaagcccggactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgtcgacccccggtcggtgcttc  <  1:670627‑M1/251‑246 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                     
ACAACATTTTCCACGGGGCCAACGGAAAGTGTCTGTTGTTCGCCAGGCAGATAAATAGTCACCGTTCCTTGCGCAAAGGCATGGGGTGTCATTACGTAAAGTACGCTGGCAATGAAATACGACTGTAATTTATTCATGGTGCGGGTTTAAGAAACGTCATTTCTACGGGAATAACCCCTGCGCCTAACATTTGCCGACTTTGACGAACCTGGCCAGTAGCCGAATCGACCCAGAATGTGTTTTGCCACTGTTTTTCTGGCCGCGTGGAAGTCACCTCTTCCTGCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGA  >  NC_000913/1048555‑1049049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.