New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2407180 =	0 (0.000)	59 (0.900)	56/486	0.2	100%	intergenic (‑539/‑381)	lrhA/alaA	DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA
	?	NC_000913	3583428 =	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

TCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAACCTTTTATTTATAAGGGTCATTGCGAATTATCTGATGCAAAGTTATGTTATGTTAGGCAAAGTAATCTTCTATTATTAATAAGCACATCAAAACCTTTTTGAATATTAAATAATAATTAATTAGCATCATCCTCATTCATTAATTCCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGT  >  NC_000913/2406931‑2407420                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                 ccaacgccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCg                                                                                                                                                                                                                                                 <  2:73821‑M1/2‑1 (MQ=255)    acgccattcatggccatagcagtgattttctggtgcggaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgatagcagaggtagcgctgatgtccggcggtgcttctgccgttacgccccaccccgtcagtagctgaacaggaggtacagctgatagaaacagaagtcactggagcggctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCtt                                                                                                                                                                                                                                              >  1:350872‑M1/247‑251 (MQ=255)      gccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcaggtgccatgttgtacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacgtcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTaa                                                                                                                                                                                                                                            >  1:357294‑M1/245‑251 (MQ=255)               ggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGtt                                                                                                                                                                                                                                    >  2:154856‑M1/236‑250 (MQ=255)                       caatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCtt                                                                                                                                                                                                                           >  2:1439‑M1/228‑251 (MQ=255)                                 ctggtgcgtaccgggttgagaagaggtgtaagtgcactgcagttgccatgttttacggcagtgagagcagagctcgcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtccgtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaacaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCattc                                                                                                                                                                                                                 <  2:254975‑M1/34‑2 (MQ=255)                                      gcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGaca                                                                                                                                                                                                            >  1:362203‑M1/213‑251 (MQ=255)                                          accgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTc                                                                                                                                                                                                        >  2:389697‑M1/209‑251 (MQ=255)                                          accgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTc                                                                                                                                                                                                        >  1:453184‑M1/209‑251 (MQ=255)                                             gggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGa                                                                                                                                                                                                     >  1:397297‑M1/206‑251 (MQ=255)                                                    gaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAatcatc                                                                                                                                                                                              >  1:489700‑M1/199‑251 (MQ=255)                                                     aagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAatcatc                                                                                                                                                                                              <  1:130969‑M1/53‑1 (MQ=255)                                                      agcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCAc                                                                                                                                                                                            >  1:71097‑M1/197‑251 (MQ=255)                                                            gtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGtt                                                                                                                                                                                      >  1:233890‑M1/191‑251 (MQ=255)                                                              aagtgaactgcagatgccctgttttacggcagtgagcgcagagatagcgctgatgtccggcggtgcttttgcagttaagcaacaccccgtcagtagctgaaccggagggacagctgttagaaacagaaggcactggagcacctcccaaaccacatcatacactaaatcagtaagttggcagcctccccCGCTTATCAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTa                                                                                                                                                                                     <  2:646516‑M1/62‑1 (MQ=255)                                                                     ctgcagttgccatgttttacggcagtgagagcagagatcgcgctgctgtccggcggtgcttttgccgttacgcaccacaccatcagtagctgaaaagaaggcaaagatgatagaaccagaaaacactggagcacctcaaaaacaccatcatacaataaatcagtaagttggcagcatcaccCCCTTAACAATAGTTTCACACATTGCCCCCATCGCGACACCTCGGAAATCATCCAGCAGTTAAACTCTcc                                                                                                                                                                             <  1:622465‑M1/70‑1 (MQ=255)                                                                          gttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggaccgctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAAt                                                                                                                                                                        <  2:513494‑M1/75‑1 (MQ=255)                                                                               catgttttacggcagtgagtgcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaagcaccatcatacactaaatcattaagttggcagcattaccCGCTTAACAATAGTTTCTCACCTTGCCCCCATTGCGACACTTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGa                                                                                                                                                                   >  1:465080‑M1/172‑251 (MQ=255)                                                                                            agtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttcgccgcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATcg                                                                                                                                                      >  1:34753‑M1/159‑251 (MQ=255)                                                                                             gtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACCCCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATcgc                                                                                                                                                     <  2:518888‑M1/94‑1 (MQ=255)                                                                                             gtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTGCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGGAATGAGGAAATATCATCATcgc                                                                                                                                                     >  2:107898‑M1/158‑251 (MQ=255)                                                                                               gagtgcagagatagcgctgatgtccggcggtgcttttgccggtacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccataatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGt                                                                                                                                                   >  2:343332‑M1/156‑251 (MQ=255)                                                                                                agagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGtt                                                                                                                                                  >  1:358474‑M1/155‑251 (MQ=255)                                                                                                  agcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTc                                                                                                                                                >  2:85219‑M1/153‑251 (MQ=255)                                                                                                    cagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCAt                                                                                                                                              <  1:62667‑M1/101‑1 (MQ=255)                                                                                                        gatagcgctgatgtccggctgtgcttttgccgttactcaccaccccgtcagtagctgaacaggagggacagctgatagaaacataatccactggagcgcctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCAGCACGCAGTTAAACTCTCCGTAATGAGGAAATTTCATCATCGCTTTTCATTAGt                                                                                                                                          >  1:560131‑M1/147‑251 (MQ=255)                                                                                                         atagcgctgaagtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTg                                                                                                                                         <  1:184505‑M1/106‑1 (MQ=255)                                                                                                           agcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGa                                                                                                                                        >  1:373931‑M1/144‑250 (MQ=255)                                                                                                                 gatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcgcctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCAGCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCt                                                                                                                                   >  1:94568‑M1/138‑249 (MQ=255)                                                                                                                        ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAgg                                                                                                                          >  2:185431‑M1/131‑251 (MQ=255)                                                                                                                         gcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGc                                                                                                                         >  2:482259‑M1/130‑251 (MQ=255)                                                                                                                                  ttgccgttacgcaccaccccgtccgtagctgaacaggagggacagctgatagaaacacaagccactggagcacctcaaacacaccatcatacacaaaatcagaaagttggcagcatcaccCGCTTAACAATCGTTTCACACCTTGCCCCCATTGCGACACCTCGGAACTAATCACGCAGTTAAACTCTCCGTAATGAGGAAATATAATCATCGACTTTCATTAGTGAATTCATAAATGAGgcattttaaa                                                                                                                 <  2:477615‑M1/130‑4 (MQ=255)                                                                                                                                          acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCGTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTGAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATc                                                                                                        >  1:77218‑M1/113‑251 (MQ=255)                                                                                                                                           cgcaacaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcccctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCt                                                                                                       >  1:42374‑M1/112‑251 (MQ=255)                                                                                                                                            gcaccaccccgtcagtagctgaacaggagggacagctgatagacacagaagcccctggagcacctcaaaaacaccatcatacactcaatcagtcagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCtt                                                                                                      <  1:458431‑M1/141‑1 (MQ=255)                                                                                                                                              accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTAc                                                                                                    >  1:70186‑M1/109‑251 (MQ=255)                                                                                                                                                caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacacgaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATGAGTGAATTCTTAAATGAGGCATTTTCACACAAGTAGCTTACAg                                                                                                  >  2:260345‑M1/107‑251 (MQ=255)                                                                                                                                                  ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTAc                                                                                                    <  1:13925‑M1/143‑1 (MQ=255)                                                                                                                                                        cagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCTACACCTCGGAAATCATCACGCAGTTAAACTTTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAAGTCTGAAATGAGGCATTTTCACACAATTATCTTACAGATaaaaa                                                                                           >  1:350703‑M1/99‑250 (MQ=255)                                                                                                                                                             gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGATTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATGACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTACCTTACAGATAAAAAAACCAg                                                                                     >  2:686639‑M1/94‑251 (MQ=255)                                                                                                                                                                 aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTGCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTGTCTTACAGATAAAAAAACCAGACtt                                                                                 >  1:552802‑M1/90‑251 (MQ=255)                                                                                                                                                                   caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaacatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTAc                                                                               <  2:476928‑M1/164‑1 (MQ=255)                                                                                                                                                                    aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACa                                                                              >  1:518888‑M1/87‑251 (MQ=255)                                                                                                                                                                                     gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACaa                                                             >  2:13925‑M1/70‑251 (MQ=255)                                                                                                                                                                                       aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAAtt                                                           <  1:507026‑M1/184‑1 (MQ=255)                                                                                                                                                                                            aagccactggagcacctcaaaaacacaatcatacactaaatcagtaagttggcagcatccccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGAATTACAATTAAGAATCAGAACAATTCACt                                                       <  2:115151‑M1/188‑1 (MQ=255)                                                                                                                                                                                               ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAAGTAAGAAGCAGAACAATTCACtatat                                                   >  2:507026‑M1/60‑251 (MQ=255)                                                                                                                                                                                                     gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGGCTTACAATTAAGAATCAGAACAATTCACTATATAACAtt                                             >  1:251066‑M1/54‑251 (MQ=255)                                                                                                                                                                                                                aaacaccatcatacactaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGc                                  <  2:248098‑M1/209‑1 (MQ=255)                                                                                                                                                                                                                              actaaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCatt                    >  2:577876‑M1/29‑251 (MQ=255)                                                                                                                                                                                                                                 aaatcagtaagttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGACTCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCattatt                 <  2:92949‑M1/226‑1 (MQ=255)                                                                                                                                                                                                                                           gttggcagcatcaccCGCGTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCattat       >  2:150592‑M1/16‑251 (MQ=255)                                                                                                                                                                                                                                            ttggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCattatt      <  1:262205‑M1/237‑1 (MQ=255)                                                                                                                                                                                                                                              ggcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCt                                                                                                                                   >  1:612347‑M1/13‑124 (MQ=255)                                                                                                                                                                                                                                              ggcagcatcaccCGCTTAACAATAGTTTCACACCGTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACGTACAATTAAGAATCAGATCAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTaa    >  1:646516‑M1/13‑251 (MQ=255)                                                                                                                                                                                                                                              ggcagcatcaccCGATTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCCTTAGTGAATTCt                                                                                                                                   <  2:612347‑M1/112‑1 (MQ=255)                                                                                                                                                                                                                                               gcagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAg   >  1:196034‑M1/12‑251 (MQ=255)                                                                                                                                                                                                                                                cagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGt  <  1:508007‑M1/241‑1 (MQ=255)                                                                                                                                                                                                                                                cagcatcaccCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGt  <  2:461939‑M1/241‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                 TCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAACCTTTTATTTATAAGGGTCATTGCGAATTATCTGATGCAAAGTTATGTTATGTTAGGCAAAGTAATCTTCTATTATTAATAAGCACATCAAAACCTTTTTGAATATTAAATAATAATTAATTAGCATCATCCTCATTCATTAATTCCGCTTAACAATAGTTTCACACCTTGCCCCCATTGCGACACCTCGGAAATCATCACGCAGTTAAACTCTCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATATACACCTCATTATTTTGTCATTATTAAGT  >  NC_000913/2406931‑2407420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.